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Bio-MUST-Apps-OmpaPa
10 results

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t/ompa_pa.t  view on Meta::CPAN 

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*    Haloplasma_contractile_1033810@EGM29912              none        239    2.2e-51 1     1   0.915     1.122       
*    Psychrobacter_sp._349106@ABQ94025                    none        331    2.6e-51 1     1   0.911     1.554       
*    Lactobacillus_sp._872326@CCK84127                    none        221    3.6e-51 1     1   0.915     1.038       
*    Staphylococcus_aureus_282458@CAG40426                none        204    3.8e-51 1     1   0.887     0.958       
*    Pediococcus_acidilactici_1306952@EOA08128            none        211    3.8e-51 1     1   0.901     0.991       
*    Bifidobacterium_gallicum_561180@EFA22864             none        232    4.1e-51 1     1   0.911     1.089       
*    Ktedonobacter_racemifer_485913@EFH90230              none        294    4.3e-51 1     1   0.906     1.380       
*    Bacillus_nealsonii_1202533@EOR24990                  none        219    4.6e-51 1     1   0.934     1.028       
*    Atopobium_parvulum_521095@ACV51745                   none        238    4.7e-51 1     1   0.920     1.117       
*    Psychrobacter_cryohalolentis_335284@ABE75027         none        331    5.3e-51 1     1   0.930     1.554       
*    Macrococcus_caseolyticus_458233@BAH17775             none        207    6.5e-51 1     1   0.901     0.972       
*    Listeria_monocytogenes_1639@CCQ21097                 none        217    7.3e-51 1     1   0.897     1.019       
*    Hyphomonas_neptunium_228405@ABI75362                 none        230    8.9e-51 1     1   0.901     1.080       
*    Bacillus_sp._666686@AGK52556                         none        225    1.2e-50 1     1   0.911     1.056       
*    Scardovia_wiggsiae_857290@EJD64896                   none        326    1.3e-50 1     1   0.897     1.531       
*    Aerococcus_urinae_866775@AEA01410                    none        295    1.7e-50 1     1   0.887     1.385       
*    Solobacterium_moorei_706433@EFW24906                 none        209    2.7e-50 1     1   0.906     0.981       
*    Brevibacillus_sp._1144311@EJL41297                   none        222    3.4e-50 1     1   0.892     1.042       
*    Dolosigranulum_pigrum_883103@EHR35184                none        218    4e-50   1     1   0.901     1.023       
*    Truepera_radiovictrix_649638@ADI14034                none        279    4.4e-50 1     1   0.939     1.310       
*    Listeria_grayi_525367@EFI84470                       none        232    4.8e-50 1     1   0.934     1.089      

t/ompa_pa.t  view on Meta::CPAN 

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*    Haloplasma_contractile_1033810@EGM29912              none        239    2.2e-51 1     1   0.915     1.122       
*    Psychrobacter_sp._349106@ABQ94025                    none        331    2.6e-51 1     1   0.911     1.554       
*    Lactobacillus_sp._872326@CCK84127                    none        221    3.6e-51 1     1   0.915     1.038       
*    Staphylococcus_aureus_282458@CAG40426                none        204    3.8e-51 1     1   0.887     0.958       
*    Pediococcus_acidilactici_1306952@EOA08128            none        211    3.8e-51 1     1   0.901     0.991       
*    Bifidobacterium_gallicum_561180@EFA22864             none        232    4.1e-51 1     1   0.911     1.089       
*    Ktedonobacter_racemifer_485913@EFH90230              none        294    4.3e-51 1     1   0.906     1.380       
*    Bacillus_nealsonii_1202533@EOR24990                  none        219    4.6e-51 1     1   0.934     1.028       
*    Atopobium_parvulum_521095@ACV51745                   none        238    4.7e-51 1     1   0.920     1.117       
*    Psychrobacter_cryohalolentis_335284@ABE75027         none        331    5.3e-51 1     1   0.930     1.554       
*    Macrococcus_caseolyticus_458233@BAH17775             none        207    6.5e-51 1     1   0.901     0.972       
*    Listeria_monocytogenes_1639@CCQ21097                 none        217    7.3e-51 1     1   0.897     1.019       
*    Hyphomonas_neptunium_228405@ABI75362                 none        230    8.9e-51 1     1   0.901     1.080       
*    Bacillus_sp._666686@AGK52556                         none        225    1.2e-50 1     1   0.911     1.056       
*    Scardovia_wiggsiae_857290@EJD64896                   none        326    1.3e-50 1     1   0.897     1.531       
*    Aerococcus_urinae_866775@AEA01410                    none        295    1.7e-50 1     1   0.887     1.385       
*    Solobacterium_moorei_706433@EFW24906                 none        209    2.7e-50 1     1   0.906     0.981       
*    Brevibacillus_sp._1144311@EJL41297                   none        222    3.4e-50 1     1   0.892     1.042       
*    Dolosigranulum_pigrum_883103@EHR35184                none        218    4e-50   1     1   0.901     1.023       
*    Truepera_radiovictrix_649638@ADI14034                none        279    4.4e-50 1     1   0.939     1.310       
*    Listeria_grayi_525367@EFI84470                       none        232    4.8e-50 1     1   0.934     1.089      

test/blastp.out  view on Meta::CPAN 

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      <Hsp_gaps>19</Hsp_gaps>
      <Hsp_align-len>129</Hsp_align-len>
      <Hsp_qseq>IVLVLYKKYNDFVALYLSVLGSAVFLYLCKLVFQRPRPET---ALYIESSYSFPSGHA----TIAVAFYGFLGYLLIRHVDALKSKINIFF--ITTILVLLIGLSRIYLGEHYISDVYSGYLIGSLWVI</Hsp_qseq>
      <Hsp_hseq>IVFAYQKRWRLLAYLSLTIASSALVNIIAKAIFHRLRPELWELSYALPHSFSFPSGHAMGSMTLVVALL-----IMIK-----KSRWSLLWGILGSLYILLIGWTRLYLGFHYPSDILGGWLLATTWTI</Hsp_hseq>
      <Hsp_midline>IV    K++     L L++  SA+   + K +F R RPE    +  +  S+SFPSGHA    T+ VA       ++I+     KS+ ++ +  + ++ +LLIG +R+YLG HY SD+  G+L+ + W I</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>178</Hit_num>
  <Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
  <Hit_def>No definition line</Hit_def>
  <Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
  <Hit_len>207</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>60.8474</Hsp_bit-score>
      <Hsp_score>146</Hsp_score>
      <Hsp_evalue>7.9503e-13</Hsp_evalue>
      <Hsp_query-from>340</Hsp_query-from>
      <Hsp_query-to>450</Hsp_query-to>
      <Hsp_hit-from>89</Hsp_hit-from>

test/blastp.out  view on Meta::CPAN 

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      <Hsp_gaps>9</Hsp_gaps>
      <Hsp_align-len>174</Hsp_align-len>
      <Hsp_qseq>DIRIANLFYILRNDTLTHIFTWITLLGKLEIITVVVLSSLIILFIWHKKYFIYPFLVAAIGSLSFTW--LGKLAFQRARPEFAVYLEDS-FSFPSGHSSIAVAIYGFLGYLLIRSTHYWSHKVNLFFATAILALLIGFSRVYLGVHYISDVWSGYLVGAMWLIIGITLSEWLRH</Hsp_qseq>
      <Hsp_hseq>DNEVYNLIYASESFISTAIFFGATQIG--EVWAMIALSLVMVALLMLYRYKIEALFFALTMLLSGVSNPILKNIFDRERPTLLRLIDISGFSFPSGHAMGSTAFFGSVIYVAHRILKGKAKSVAMTL-SVLMIVLISSSRVYLGVHYPTDIMAG-IVGGLFCIVLTQL--ILRH</Hsp_hseq>
      <Hsp_midline>D  + NL Y   +   T IF   T +G  E+  ++ LS +++  +   +Y I     A    LS     + K  F R RP     ++ S FSFPSGH+  + A +G + Y+  R     +  V +   + ++ +LI  SRVYLGVHY +D+ +G +VG ++ I+   L   LRH</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>177</Hit_num>
  <Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
  <Hit_def>No definition line</Hit_def>
  <Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
  <Hit_len>207</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>52.373</Hsp_bit-score>
      <Hsp_score>124</Hsp_score>
      <Hsp_evalue>5.01712e-10</Hsp_evalue>
      <Hsp_query-from>187</Hsp_query-from>
      <Hsp_query-to>278</Hsp_query-to>
      <Hsp_hit-from>102</Hsp_hit-from>

test/blastp.out  view on Meta::CPAN 

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      <Hsp_gaps>6</Hsp_gaps>
      <Hsp_align-len>167</Hsp_align-len>
      <Hsp_qseq>DIMFSNLIYHFRNVSVVKIMLFITMFGNKKTIIVITAMSIILFLIYRKRKCIFPLFV--SIVGSTATTWSIKFILHRPRP-LEAYYSAVGYSFPSGHATISAAFYGFLTYFYITQAKKLKSKFNIAMAGLAV-VILIGASRIYLDVHYFSDVWAGYLIGSCWLIIAI</Hsp_qseq>
      <Hsp_hseq>DQLFSSAVQSEFMMFLEPVMRLITMIADTK-LGLIYAVLIAAYLWLRQGQRVDAIWVICTMFGGAVVAYLLKEFVKRPRPTIAQIVPETGYSMPSGHTFEAFLVLAFLYLFFVRPMAESSLK-KACTAGLVIWQILVIWSRIFMGAHYLTDTLVAVGLGTVWLWVAI</Hsp_hseq>
      <Hsp_midline>D +FS+ +     + +  +M  ITM  + K + +I A+ I  +L  R+ + +  ++V  ++ G     + +K  + RPRP +       GYS PSGH   +     FL  F++    +   K     AGL +  IL+  SRI++  HY +D      +G+ WL +AI</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>179</Hit_num>
  <Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
  <Hit_def>No definition line</Hit_def>
  <Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
  <Hit_len>207</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>55.8398</Hsp_bit-score>
      <Hsp_score>133</Hsp_score>
      <Hsp_evalue>4.87583e-11</Hsp_evalue>
      <Hsp_query-from>354</Hsp_query-from>
      <Hsp_query-to>447</Hsp_query-to>
      <Hsp_hit-from>101</Hsp_hit-from>

test/blastp.out  view on Meta::CPAN 

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      <Hsp_gaps>6</Hsp_gaps>
      <Hsp_align-len>123</Hsp_align-len>
      <Hsp_qseq>ISIILISYKKIK----ELLFFAVNFFGGLIFLISLKYIFNRERPVAIYHYFNEITPSFPSGHAFMSFITYGFAGFLIFKVVKNNYIKKIYYFSSIIIVFLIGFSRIYLGVHWFSDVIGAYVSG</Hsp_qseq>
      <Hsp_hseq>LSLILVIYLALKRYYVEMLFFVFTMGLSTILNPLLKNIFDRERPTVL-RLVEASGYSFPSGHAMGSIAFFGSLIYLAHRLIKSKARIVVYIICALFILGICS-SRIYLGVHYPTDIMAGLLGG</Hsp_hseq>
      <Hsp_midline>+S+IL+ Y  +K    E+LFF        I    LK IF+RERP  +         SFPSGHA  S   +G   +L  +++K+     +Y   ++ I+ +   SRIYLGVH+ +D++   + G</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>176</Hit_num>
  <Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
  <Hit_def>No definition line</Hit_def>
  <Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
  <Hit_len>207</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>54.6842</Hsp_bit-score>
      <Hsp_score>130</Hsp_score>
      <Hsp_evalue>1.11335e-10</Hsp_evalue>
      <Hsp_query-from>284</Hsp_query-from>
      <Hsp_query-to>444</Hsp_query-to>
      <Hsp_hit-from>33</Hsp_hit-from>

test/blastp.out  view on Meta::CPAN 

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      <Hsp_gaps>25</Hsp_gaps>
      <Hsp_align-len>99</Hsp_align-len>
      <Hsp_qseq>FQRQRPFNM----THLMEFSFPSGHTAYSAFFYGFLAYALARGTTDRGKKVDLFFLWVLLVTA---------VGFSRLYIGVHYLSDVLAGALLGFSWL</Hsp_qseq>
      <Hsp_hseq>FRRQRP-NLWVLPTQPTDYSYPSGHSMSAISFYGLLAV-----------YTSVFLSIPIIITGAIASVISMLVGFSRMYLGVHWASDVLGGWIAGSIWL</Hsp_hseq>
      <Hsp_midline>F+RQRP N+    T   ++S+PSGH+  +  FYG LA               +F    +++T          VGFSR+Y+GVH+ SDVL G + G  WL</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>158</Hit_num>
  <Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
  <Hit_def>No definition line</Hit_def>
  <Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
  <Hit_len>207</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>52.373</Hsp_bit-score>
      <Hsp_score>124</Hsp_score>
      <Hsp_evalue>6.35498e-10</Hsp_evalue>
      <Hsp_query-from>351</Hsp_query-from>
      <Hsp_query-to>435</Hsp_query-to>
      <Hsp_hit-from>102</Hsp_hit-from>

test/database.fasta  view on Meta::CPAN 

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>Staphylococcus_aureus_282458@CAG40426
MSQWKRISLLIVFTLVFGIIAFFHESRLGKWIDNEVYEFIYSSESFITTSIMLGATKVGE
VWAMLCISLLLVAYLMLKRHKIEALFFALTMALSGILNPALKNIFDRERPTLLRLIDITG
FSFPSGHAMGSTAYFGSSIYLLNRLNQGNSKGILIGLCAAMILLISISRVYLGVHYPTDI
IAGIIGGVFCIILSTLLLRNKLIN
>Staphylococcus_pseudintermedius_984892@ADX76632
MTYWKKISLLIVFTLIFSMIAMFHESRLGRWIDNEVYNLIYASESFISTAIFFGATQIGE
VWAMIALSLVMVALLMLYRYKIEALFFALTMLLSGVSNPILKNIFDRERPTLLRLIDISG
FSFPSGHAMGSTAFFGSVIYVAHRILKGKAKSVAMTLSVLMIVLISSSRVYLGVHYPTDI
MAGIVGGLFCIVLTQLILRHPLAQTKI
>Macrococcus_caseolyticus_458233@BAH17775
MSQAKRILLILIFSFIFGMIAFFHESRIGKWIDNEVYEFIYSSESFITTTIMLGFTKIGE
VWSMILLSLLLVCYLLLKKLKIDALFFALSMILSGVLNPLLKNIFDRERPTLLRLIDITG
FSFPSGHAMGSCAFFGSLAILIKYHSNSSFKPYFIGMCVFTILMISSSRVYLGVHYPTDI
IAGVIGGAVCILLSQLILNKVIDNRSQ
>Staphylococcus_pettenkoferi_904314@EHM72354
MTRWKRILILIICIILFSLIALYHGAQIGREVDNGVYHFIFSSESFLTTTFFIGITKIGE
VYTMAVLSLILVIYLALKRYYVEMLFFVFTMGLSTILNPLLKNIFDRERPTVLRLVEASG
YSFPSGHAMGSIAFFGSLIYLAHRLIKSKARIVVYIICALFILGICSSRIYLGVHYPTDI
MAGLLGGGSSLILSTLILRHKLQI
>Staphylococcus_simulans_883166@EKS25136

test/database.mafft  view on Meta::CPAN 

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----------------K----GKAK---------SVAM--T-LS---------VL--MIV
----L-IS---SSRVYLGVHYPT--------------------DIMAG----------IV
-----G------G------LF-----------C------IV-------------------
-----------------------------------------------LTQLIL-------
--------------------------------------------------------RH-P
------------------------------------------------------------
LAQTKI------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------
>Macrococcus_caseolyticus_458233@BAH17775
------------------------------------------------------------
------------------------------------------------------------
-----------------------------MSQ-AKR------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------ILLI-----------------------L
------------------------------------------------------------
-----------------------IFSFI-----FGMIAF---------------------
-----F----------------------------------H-------------------
------E---------SR------------------------------------------

test/hmmsearch.out  view on Meta::CPAN 

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Pelosinus_fermentans_1122947@EIW31336                -          profile              -            1.6e-90  296.5  13.6   1.8e-90  296.4  13.6   1.0   1   0   0   1   1   1   1 -
Bacillus_macauensis_1196324@EIT85841                 -          profile              -            3.1e-81  266.2   6.1   3.9e-81  265.8   6.1   1.0   1   0   0   1   1   1   1 -
Sporosarcina_newyorkensis_1027292@EGQ24744           -          profile              -            1.1e-80  264.3  16.7   1.3e-80  264.1  16.7   1.0   1   0   0   1   1   1   1 -
Paenibacillus_polymyxa_886882@ADO56408               -          profile              -            3.5e-79  259.4  10.8   4.2e-79  259.2  10.8   1.0   1   0   0   1   1   1   1 -
Paenibacillus_sp._481743@ACX66507                    -          profile              -            2.1e-77  253.6   9.6   2.6e-77  253.3   9.6   1.0   1   0   0   1   1   1   1 -
Desulfotomaculum_carboxydivorans_868595@AEF93225     -          profile              -            7.8e-75  245.2   8.0   8.5e-75  245.1   8.0   1.0   1   0   0   1   1   1   1 -
Paenibacillus_curdlanolyticus_717606@EFM13001        -          profile              -            2.7e-74  243.4   2.8   2.9e-74  243.3   2.8   1.0   1   0   0   1   1   1   1 -
Staphylococcus_aureus_282458@CAG40426                -          profile              -            5.2e-74  242.5   9.9   5.7e-74  242.4   9.9   1.0   1   0   0   1   1   1   1 -
Haloplasma_contractile_1033810@EGM25763              -          profile              -            3.5e-73  239.8  23.9   5.2e-73  239.2  23.9   1.2   1   1   0   1   1   1   1 -
Haloplasma_contractile_1033810@EGM29912              -          profile              -            3.5e-73  239.8  23.9   5.2e-73  239.2  23.9   1.2   1   1   0   1   1   1   1 -
Macrococcus_caseolyticus_458233@BAH17775             -          profile              -            7.7e-73  238.7  11.7   8.3e-73  238.6  11.7   1.0   1   0   0   1   1   1   1 -
Staphylococcus_massiliensis_1229783@EKU47500         -          profile              -            9.5e-73  238.4  12.9     1e-72  238.2  12.9   1.0   1   0   0   1   1   1   1 -
Staphylococcus_pettenkoferi_904314@EHM72354          -          profile              -            9.6e-72  235.1  16.4     1e-71  235.0  16.4   1.0   1   0   0   1   1   1   1 -
Carnobacterium_sp._208596@AEB29259                   -          profile              -            2.5e-71  233.7  10.5   2.7e-71  233.6  10.5   1.0   1   0   0   1   1   1   1 -
Staphylococcus_pseudintermedius_984892@ADX76632      -          profile              -            7.2e-71  232.2  15.1   7.8e-71  232.1  15.1   1.0   1   0   0   1   1   1   1 -
Staphylococcus_simulans_883166@EKS25136              -          profile              -            7.4e-66  215.8  14.7     8e-66  215.7  14.7   1.0   1   0   0   1   1   1   1 -
Rivularia_sp._373994@AFY57759                        -          profile              -            4.1e-63  206.8   8.9   5.2e-63  206.5   8.9   1.0   1   0   0   1   1   1   1 -
Synechocystis_sp._927677@ELR88413                    -          profile              -            5.6e-60  196.6   6.4     6e-60  196.5   6.4   1.0   1   0   0   1   1   1   1 -
Kyrpidia_tusciae_562970@ADG04796                     -          profile              -            1.2e-59  195.5   2.1   1.5e-59  195.2   2.1   1.0   1   0   0   1   1   1   1 -
Stanieria_cyanosphaera_111780@AFZ34417               -          profile              -            1.8e-59  194.9  12.9     2e-59  194.8  12.9   1.0   1   0   0   1   1   1   1 -
Gillisia_limnaea_865937@EHQ04246                     -          profile              -            9.5e-59  192.6  14.6   1.2e-58  192.3  14.6   1.0   1   0   0   1   1   1   1 -

test/hmmsearch_dom-1.exp-fasta  view on Meta::CPAN 

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AYRLFVVHLRTPLLTEIMEGFSGLASPVTVIVMLIVVAAFAPGPSVGRLASINLGGVVIV
DLIFKAIVQRPRPDGFRLVVETGYSFPSGHSMFSMAFYGLLIWLVWHYEKDKLQRWIWCG
LFSGIIIMIGVSRIYLGVHYATDVIGGFSLALVWLVLFTKLMIPSLIYKKKVPQAKTD
>Psychrobacter_cryohalolentis_335284@ABE75027
MITLIQKNQQLLLLGVFILLVVVVLWVLQSVIIRYGQKVLNQVPTCWTVLEQYFGKSKRL
TRLKNNYPKLYHASLQRLTVQHFYGLPLTVLFLVMGYILALFFGLVEDVVTSDTIVATDF
FVSQQMSMLSESPVVTFFIFITSFASTATTCLIVLLVCILCWVIRQPYILVGFLIATLGS
TIFTFLSKLLFHRTRPVDILLFEQTDSFPSGHATVTVALYGFLAYMAIRFSRNFATQVRI
AVITVFFSLLIGLSRILLNEHYLSDVLGGYLVGALWLTVAISVTEWLRTRDKIDWQISWS
VTQVRLVWLNIVCVLIGTSIYAEFYQLPLLI
>Macrococcus_caseolyticus_458233@BAH17775
MSQAKRILLILIFSFIFGMIAFFHESRIGKWIDNEVYEFIYSSESFITTTIMLGFTKIGE
VWSMILLSLLLVCYLLLKKLKIDALFFALSMILSGVLNPLLKNIFDRERPTLLRLIDITG
FSFPSGHAMGSCAFFGSLAILIKYHSNSSFKPYFIGMCVFTILMISSSRVYLGVHYPTDI
IAGVIGGAVCILLSQLILNKVIDNRSQ
>Listeria_monocytogenes_1639@CCQ21097
MKKTPFIISGIGLLGFIFFMTGVMTGAKWIQRFDHYWNSVIRVGITDTKTTVISYLTDIG
GVATICILTAIIIIVFVFMRKVDTAIWFGSIVLIGGALIPSIIKNIVQRPRPTYKLIEQG
GFSFPSGHSTGSTVFYGMLAFLLILYVSRRWLRFTIGILALGIVIFVMYSRVYLGVHFPS
DVVAGFLIGNAALFSGIGCYFIWNEKLAVWANKFKKA
>Hyphomonas_neptunium_228405@ABI75362

test/hmmsearch_dom-1.exp-idl  view on Meta::CPAN 

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Haloplasma_contractile_1033810@EGM29912
Psychrobacter_sp._349106@ABQ94025
Lactobacillus_sp._872326@CCK84127
Staphylococcus_aureus_282458@CAG40426
Pediococcus_acidilactici_1306952@EOA08128
Bifidobacterium_gallicum_561180@EFA22864
Ktedonobacter_racemifer_485913@EFH90230
Bacillus_nealsonii_1202533@EOR24990
Atopobium_parvulum_521095@ACV51745
Psychrobacter_cryohalolentis_335284@ABE75027
Macrococcus_caseolyticus_458233@BAH17775
Listeria_monocytogenes_1639@CCQ21097
Hyphomonas_neptunium_228405@ABI75362
Bacillus_sp._666686@AGK52556
Scardovia_wiggsiae_857290@EJD64896
Aerococcus_urinae_866775@AEA01410
Solobacterium_moorei_706433@EFW24906
Brevibacillus_sp._1144311@EJL41297
Dolosigranulum_pigrum_883103@EHR35184
Truepera_radiovictrix_649638@ADI14034
Listeria_grayi_525367@EFI84470

test/hmmsearch_dom.fasta  view on Meta::CPAN 

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AYRLFVVHLRTPLLTEIMEGFSGLASPVTVIVMLIVVAAFAPGPSVGRLASINLGGVVIV
DLIFKAIVQRPRPDGFRLVVETGYSFPSGHSMFSMAFYGLLIWLVWHYEKDKLQRWIWCG
LFSGIIIMIGVSRIYLGVHYATDVIGGFSLALVWLVLFTKLMIPSLIYKKKVPQAKTD
>Psychrobacter_cryohalolentis_335284@ABE75027
MITLIQKNQQLLLLGVFILLVVVVLWVLQSVIIRYGQKVLNQVPTCWTVLEQYFGKSKRL
TRLKNNYPKLYHASLQRLTVQHFYGLPLTVLFLVMGYILALFFGLVEDVVTSDTIVATDF
FVSQQMSMLSESPVVTFFIFITSFASTATTCLIVLLVCILCWVIRQPYILVGFLIATLGS
TIFTFLSKLLFHRTRPVDILLFEQTDSFPSGHATVTVALYGFLAYMAIRFSRNFATQVRI
AVITVFFSLLIGLSRILLNEHYLSDVLGGYLVGALWLTVAISVTEWLRTRDKIDWQISWS
VTQVRLVWLNIVCVLIGTSIYAEFYQLPLLI
>Macrococcus_caseolyticus_458233@BAH17775
MSQAKRILLILIFSFIFGMIAFFHESRIGKWIDNEVYEFIYSSESFITTTIMLGFTKIGE
VWSMILLSLLLVCYLLLKKLKIDALFFALSMILSGVLNPLLKNIFDRERPTLLRLIDITG
FSFPSGHAMGSCAFFGSLAILIKYHSNSSFKPYFIGMCVFTILMISSSRVYLGVHYPTDI
IAGVIGGAVCILLSQLILNKVIDNRSQ
>Listeria_monocytogenes_1639@CCQ21097
MKKTPFIISGIGLLGFIFFMTGVMTGAKWIQRFDHYWNSVIRVGITDTKTTVISYLTDIG
GVATICILTAIIIIVFVFMRKVDTAIWFGSIVLIGGALIPSIIKNIVQRPRPTYKLIEQG
GFSFPSGHSTGSTVFYGMLAFLLILYVSRRWLRFTIGILALGIVIFVMYSRVYLGVHFPS
DVVAGFLIGNAALFSGIGCYFIWNEKLAVWANKFKKA
>Hyphomonas_neptunium_228405@ABI75362

test/hmmsearch_dom.out  view on Meta::CPAN 

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Haloplasma_contractile_1033810@EGM29912              -            239 database             -            213   2.2e-51  168.5  23.7   1   1   4.8e-51   4.8e-51  167.4  23.7    10   204    21   232     2   239 0.80 -
Psychrobacter_sp._349106@ABQ94025                    -            331 database             -            213   2.6e-51  168.2  24.0   1   1   4.9e-51   4.9e-51  167.3  23.4    11   204    91   290    13   306 0.85 -
Lactobacillus_sp._872326@CCK84127                    -            221 database             -            213   3.6e-51  167.8   4.7   1   1   4.1e-51   4.1e-51  167.6   4.7    15   209    20   215     2   221 0.82 -
Staphylococcus_aureus_282458@CAG40426                -            204 database             -            213   3.8e-51  167.7   9.8   1   1   4.5e-51   4.5e-51  167.5   9.8    14   202     9   197     1   202 0.86 -
Pediococcus_acidilactici_1306952@EOA08128            -            211 database             -            213   3.8e-51  167.7  12.2   1   1   4.5e-51   4.5e-51  167.5  12.2    16   207    16   205     2   211 0.86 -
Bifidobacterium_gallicum_561180@EFA22864             -            232 database             -            213   4.1e-51  167.6  16.4   1   1   4.6e-51   4.6e-51  167.4  16.4    11   204    26   220     1   229 0.81 -
Ktedonobacter_racemifer_485913@EFH90230              -            294 database             -            213   4.3e-51  167.5   1.8   1   1   5.1e-51   5.1e-51  167.3   1.8    11   203    66   258    23   282 0.81 -
Bacillus_nealsonii_1202533@EOR24990                  -            219 database             -            213   4.6e-51  167.4   3.5   1   1   5.6e-51   5.6e-51  167.1   3.5    12   210    10   211     3   217 0.87 -
Atopobium_parvulum_521095@ACV51745                   -            238 database             -            213   4.7e-51  167.4  10.7   1   1   5.8e-51   5.8e-51  167.1  10.7    13   208    33   231     5   236 0.83 -
Psychrobacter_cryohalolentis_335284@ABE75027         -            331 database             -            213   5.3e-51  167.2  22.7   1   1   5.3e-51   5.3e-51  167.2  22.7    10   207    90   289    55   305 0.88 -
Macrococcus_caseolyticus_458233@BAH17775             -            207 database             -            213   6.5e-51  166.9  10.0   1   1   6.9e-51   6.9e-51  166.9  10.0    11   202     8   197     1   207 0.84 -
Listeria_monocytogenes_1639@CCQ21097                 -            217 database             -            213   7.3e-51  166.8  14.4   1   1   9.2e-51   9.2e-51  166.4  14.4    13   203     7   200     2   216 0.85 -
Hyphomonas_neptunium_228405@ABI75362                 -            230 database             -            213   8.9e-51  166.5   8.5   1   1   1.1e-50   1.1e-50  166.2   8.5    11   202    23   223     6   228 0.87 -
Bacillus_sp._666686@AGK52556                         -            225 database             -            213   1.2e-50  166.0  15.6   1   1   1.4e-50   1.4e-50  165.8  15.6    10   203    23   216     4   225 0.86 -
Scardovia_wiggsiae_857290@EJD64896                   -            326 database             -            213   1.3e-50  166.0  13.4   1   1   1.6e-50   1.6e-50  165.7  13.4    14   204    30   228     5   259 0.83 -
Aerococcus_urinae_866775@AEA01410                    -            295 database             -            213   1.7e-50  165.6   3.8   1   1   2.1e-50   2.1e-50  165.2   3.8    16   204    16   221     5   244 0.83 -
Solobacterium_moorei_706433@EFW24906                 -            209 database             -            213   2.7e-50  164.9  16.8   1   1   3.2e-50   3.2e-50  164.7  16.8    10   202     9   200     1   208 0.84 -
Brevibacillus_sp._1144311@EJL41297                   -            222 database             -            213   3.4e-50  164.6   9.2   1   1   4.4e-50   4.4e-50  164.2   9.2    14   203    15   204     3   215 0.85 -
Dolosigranulum_pigrum_883103@EHR35184                -            218 database             -            213     4e-50  164.3  15.8   1   1   4.2e-50   4.2e-50  164.3  15.8    12   203    19   212     1   218 0.86 -
Truepera_radiovictrix_649638@ADI14034                -            279 database             -            213   4.4e-50  164.2   8.4   1   1   5.6e-50   5.6e-50  163.9   8.4    10   209    15   215     3   237 0.86 -
Listeria_grayi_525367@EFI84470                       -            232 database             -            213   4.8e-50  164.1  19.1   1   1   5.4e-50   5.4e-50  163.9  19.1     6   204     6   215     1   229 0.85 -



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