Bio-MUST-Core

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test/AhHMA4.ali  view on Meta::CPAN

MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPLIENILKSLDGVKEYTVIVPSRTVIVVHDSLLISPFQIAKALNQARLEANVKVNGETSFKNKWPSPFAVVSGIFLLLSFLKFVYPPLRWLAVVGVAAGIYPILAKAVASIRRLRVDINILIIITVAATLAMQDYMEAAAVVFLFTIADWLETRASYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Noccaea caerulescens_107243@40994784
MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPLIENILKSLDGVKEYTVIVPSRTVIVVHDSLLISPFQIAKALNQARLEANVKVNGETSFKNKWPSPFAVVSGIFLLLSFLKFVYPPLRWLAVVGVAAGIYPILAKAVASIRRLRVDINILVIITVAATLAMQDYMEAAAVVFLFTIADWLETRTSYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Arabidopsis thaliana_3702@7488065
MQDFMEAAAVVFLFTISDWLETRASYKATSVMQSLMSLAPQKAIIAETGEEVEVDEVKVDTVVAVKAGETIPIDGIVVDGNCEVDEKTLTGEAFPVPKQRDSTVWAGTINLNGYICVKTTSLAGDCVVAKMAKLVEEAQSSKTKSQRLIDKCSQYYTPAIILVSACVAIVPVIMKVHNLKHWFHLALVVLVSGCPCGLILSTPVATFCALTKAATSGLLIKSADYLDTLSKIKIVAFDKTGTITRGEFIV...
>Noccaea caerulescens_107243@46361991
MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPLIENILKSLDGVKEYTVIVPSRTVIVVHDSLLIPPFQIAKALNQARLEANVKVNGETSFKNKWPSPFAVVSGIFLLPSFLKFVYPPLRWLAVVGVAAGIYPILAKAVASIRRLRVDINILIIITVAATLAMQDYMEAAAVVFLFTTADWLETRASYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Noccaea caerulescens_107243@326416422
MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPVIENILKSLDGVKEYTVIVPSRTVIVVHDSLLISPFQIAKALNQARLEANVKVNGETSFKNKWDSPFAVVSGIFLLLSFLKFVYPPLRWLAVVGVAAGIYPILAKSVASIRRLRVDINILIIITVAATLAMQDYMEAAAVVFLFTIADWLETRASYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Arabidopsis thaliana_3702@15234620
MASKKMTKSYFDVLGICCTSEVPLIENILNSMDGVKEFSVIVPSRTVIVVHDTLILSQFQIVKALNQAQLEANVRVTGETNFKNKWPSPFAVVSGILLLLSFFKYLYSPFRWLAVAAVVAGIYPILAKAVASLARFRIDINILVVVTVGATIGMQDYTEAAVVVFLFTIAEWLQSRASYKASAVMQSLMSLAPQKAVIAETGEEVEVDELKTNTVIAVKAGETIPIDGVVVDGNCEVDEKTLTGEAFPVP...
>Arabidopsis thaliana_3702@20384833
MASKKMTKSYFDVLGICCTSEVPLIENILNSMDGVKEFSVIVPSRTVIVVHDTLILSQFQIVKALNQAQLEANVRVTGETNFKNKWPSPFAVVSGILLLLSFFKYLYSPFRWLAVAAVVAGIYPILAKAVASLARFRIDINILVVVTVGATIGMQDYTEAAVVVFLFTIAEWLQSRASYKASAVMQSLMSLAPQKAVIAETGEEVEVDELKTNTVIAVKAGETIPIDGVVVDGNCEVDEKTLTGEAFPVP...
>Arabidopsis lyrata_81972@297798966
MASKKMTKSYFDVLGICCTSEVPLIENILKSMDGVKEYSVIVPSRTVIVVHDTLILSQFQIVKALNQARLEANVRVTGETNFRNKWPSPFAMVSGLLLLLSFFKYLYSPFRWLAVAAVVAGIYPILAKAVASLARFRIDINILVIITVGATIGMRDYTEAGVVVFLFTIAEWLQSRASYKASAVMQSLMSLAPQKAMIAETGEEVQVDELKINTVIAVKAGETIPIDGVVVDGNCEVDEKTLTGEAFPVP...
>Arabidopsis halleri_81971@37665197
MAEGEEAKKKNLQTSYFDVVGICCTSEVSIVGDVLRPLDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAILSGVFLALSFFKYFYSLLEWLAVVAVVAGIFPILAKAVASVTRFRLDINALTFIAVIATLCMQNFTEAATIVFLFSVADWLESSAAHKASTVMSSLMSLAPRKAVIAETGHEVDVDEVRINTIVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Arabidopsis lyrata_81972@297798964
MAEGEEAKKKNLQTSYFDVVGICCSSEVSIVGDVLRPLDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGDTSLKSQWPSPFAIVSGVFLAVSFFKYFYNLLEWLAIAAVVAGIFPILAKAVASVTRFRLDINGLTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASTVMSSLMSLAPRKAVIADTGLEVDVDEVRINTIVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Arabidopsis thaliana_3702@334305691
MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Ricinus communis_3988@255582930
MAAQDKNKAAKKHQKSYFDVLGLCCSSEVPLIENILKSLDGVKEYSVIVPTRTVIVVHDNLLISQLQIVKALNQARLEANVRVKGDTSHQKKWPSPFAVASGVLLLLSLLKFVYHPLHWLALGAVAIGIFPILMKAVASLRNFRLDTNILVLIAVVGTIVLKEYVEAGFIVFLFTIAEWLESRAGHKANAVMSSLMSITPQKAIIAATGEEVDADEVKLNTVLAVKAGEVIPIDGIVVDGNCEVDEKTLT...
>Vitis vinifera_29760@359484975
MATKKWQKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGEVAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVA...
>Vitis vinifera_29760@296090298
MATKKWQKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGEVAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVA...
>Medicago truncatula_3880@357479567
MSSSEGGKKLQKSYFDVVGLCCSSEVPLIENILKPLQGVKEVSVIVPSRTVIVVHDTLLISQLQIVKALNQARLEANIRIYGNENHKKKWPSIYSVASGLLLLLSFLKFVYTPFKYVALAAVVAGIYPIFLKAIVSIRNLRIDINILVIIAVAGTIAMNDYLEAGTIVFLFSISDWLESSASHKSNAVMTSLMSIAPQKAVIAETGEDVDVDEVRVNTILAVKAGEIIPIDGIIVDGDCEVDEKTLTGES...
>Arabidopsis thaliana_3702@7269912
MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Glycine max_3847@356550732
MDKAEKAVQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNQARLEANIRVYGDEKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVGAYPIILKAIVSIRNLRLDINILMLIAVIGTIVMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNITPQKAVIAETGEVVDADEVKIDTVLAVKAGEVIPIDGVVLDGTCEVDEKTLTGESFP...
>Glycine max_3847@356564834
MRKSYFDVLGLCCSSEVPLIENILRPLQGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNEARLEANIRVYGDEKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVAVYPLILKAIVSIRNLRLDINILMLIAVIGTISMNHYLEAGTIVFLFSIAQWLESRASHKATAVMSSLMNIAPQKAVIAETGEVVDADEVKINTVLEVKAGEVIPIDGVVIDGICEVDEKKLTGESFPVAKQKDS...
>Arabidopsis thaliana_3702@110740419
GCSTVPEIEVDTKGGKTVGYVYVGERLAGFFNLSDACRSGVSQAMAELKSLGIKTAMLTGDNQAAAMHAQEQLGNVLDVVHGDLLPEDKSRIIQEFKKEGPTAMVGDGVNDAPALATADIGISMGISGSALATQTGNIILMSNDIRRIPQAVKLARRARRKVVENVCLSIILKAGILALAFAGHPLIWAAVLVDVGTCLLVIFNSMLLLREKKKIGNKKCYRASTSKLNGRKLEGDDDYVVDLEAGLLTK...
>Arabidopsis thaliana_3702@4938488
MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Oryza sativa_39947@125598398
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQARLEASVRAYGNGSEKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGES...
>Oryza sativa_39946@218198834
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQARLEASVRAYGNGSEKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGES...
>Oryza sativa_39947@315623028
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQTRLEASVRAYGNGSEKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGES...
>Sorghum bicolor_4558@242096926
MGDAAVPAGTLQKSYFDVLGICCPSEVPLVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALNQARLEASVRAYGSGSEEKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLRSFAAARRLTLDVNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSLMSMTPQKAVLAETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTL...
>Brachypodium distachyon_15368@357123620
MGDDAAVPAAAAKLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVVHDAAAISQSQIVKALNQARLEASVRAYGGGGGAEKISNKFPSPYVLVCGALLVVSLFEHFWPPLKWFALAGAAAGLPPIVLRSVAAARRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASRKATAGMSSLMSMAPQNAVLAETGQVVATQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVD...
>Triticum aestivum_4565@302595059
MADSTSPAAAARLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVLHDAAAISQAQIVRALNGARLEASVRAYGGAGQSKVSNKWPSPYVLVCGVLLVVSLFEHFWRPLRWFAVAGAAAGLPPIVLRSVAALRRRTMDVNILMLIAVAGAIALKDYPEAGFIVFLFTIAEWLETRACGKATAGMSSLMSMAPQNAVLAETGQVVATQDVKINTVIAVKAGEVVPIDGVVVDGRSEVDES...
>Triticum aestivum_4565@95114390
MGDSAAPAGKLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVLHDAAAISTAQIVRALNGARLEASVRAYGGAGQSKVSNKWPSPYVLVCGVLLVVSLFEHFWRPLKWFAVAGAAAGLPPIVLRSVAALRRRTMDVNILMLIAVAGAIALKDYSEAGFIVFLFTIAEWLETRACGKATAGMSSLMSMAPQNAVLAETGQVVATQDVKINTVIAVKAGEVVPIDGVVVDGRSEVDESTL...
>Glycine max_3847@356532650
MVENIKRSSFEVLGMCCATEEALVERILKPLRGVKDVSVIVPTRTVTVVHDVLLISESQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLLLALSFLKYAYQPLGWLALGSVVIGFPKVLLRAIASIKALTLNINILVLLAVCGTAALQDFWEAGIIIFLFSIAQWLETRATHKAMVAMSSLTSMAPQKAVIAETGELVDVNDVKINTILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESLPVTK...
>Glycine max_3847@356468504
MVENIKRSSFEVLGMCCATEEALVERILKPLRGVKDVSVIVPTRTVTVVHDVLLISESQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLLLALSFLKYAYQPLGWLALGSVVIGFPKVLLRAIASIKALTLNINILVLLAVCGTAALQDFWEAGIIIFLFSIAQWLETRATHKAMVAMSSLTSMAPQKAVIAETGELVDVNDVKINTILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESLPVTK...

test/AhHMA4.ali  view on Meta::CPAN

MRDDDRGGLLVPPDSTPSSGGYVDSNTPRKRKRITTYPRDDPGWLAPFNALVFKYPTAMFLLAMFLLAAAPALMDHGAVDVTRAKLGSTDGGVGAGRYMPLVREKEARAGADETTTTTAAEAEAARPRPLVFAAADDDRGGDLSEKSSLLGEKNKRSSSDDFASHLEAIHVAVRDEHAGGDEPSSHARLKVLGICCPSEVPLIHGILDKRPGVRAVKVIVPTKTVLVEHAPSVASAASIVDALNRARLQA...
>Phaeodactylum tricornutum_556484@219114054
MDSPSRRPSLKKSSSSSKSLKPELARSVLVCNGICCAAEIPIINRILEPIKGVKKVRVNVPLKQILVDYDATQVSAKAMTKALNVENLAATIKRDGDDEQMVSEPNTYPKPAVVLSGVCWLVSMLSLAEGNLTNLKWVGLASVAFGLPAIAIKAIRTMARYQFDTNCLMLFAACGAVALQEYTEAAAVVFLFAISEWLEVRATARARHALSAIVHLRPEKANLVHPQTRQLVVIPASAVPVGALVSVKTG...
>Phaeodactylum tricornutum_556484@219114062
MDSPSRRPSLKKSSSSSKSLKPELARSVLVCNGICCAAEIPIINRILEPIKGVKKVRVNVPLKQILVDYDATQVSAKAMTKALNVENLAATIKRDGDDEQMVSEPNTYPKPAVVLSGVCWLVSMLSLAEGNLTNLKWVGLASVAFGLPAIAIKAIRTMARYQFDTNCLMLFAACGAVALQEYTEAAALVFLFAISEWLEVRATARARHALSAIVHLRPEKANLVHPQTRQLVVIPASAVPVGALVSVKTG...
>Mariprofundus ferrooxydans_314345@114776637
MDCPDCAARIEKAVVRLPGVANVRVNFIGETLSAEVNSEESMQRMRKAICSLGYSVEEDGEKRVTSVLQVKGMDCSEEKVLVEKVLTGIPGLERFDVNLMSQRLRVIHDPNILPLSGIIRVLENAGLSAAPFGAAQPTEGRWSRYGREISTGTAGILTGVGLLLHFMDAGNVWEITAYSLAIASGGWFIARKGLAAARHRSLDMNFLMMVAVIGAMGIGAWDEGAMVVFLFALAQMLEGRAMDRARSAVR...
>Thalassiosira pseudonana_296543@223998022
VSGICCSSEIPAIRSILKPLPGVRKVGINVATKVVYVDHDPGVISAGLLMRALNEERFGAEVLTDGGVELMHDHRWFHGLKFNVAISGIFWMMSMLSLIGGNWEYLKYAGIGSVLFGMPPVLMKGWMTIRRYQFDANCMMIIAAFGALALGEFDEAASVAFLFSVSEWLEARATEKARRALGEIVSLRPEYANLVDKKAGGIVIVPASKVPVGSLVSVRTGDKVPADGLVVEGTSSVDESSLTGEARPVE...
>Ostreococcus tauri_70448@308800134
MSPTGDENRSDDDTCLWCDARTPCVEQGLCLDPTVIDFTCVEFVDGFETRAGGPLDAFRSAVETLNDEQNILQLHPTEAYLIEGALVARDPVTRRWRPARAVGRDADADEKSSRHSDDSAENGRLRMLELFASIGCPPEAKEARERLIGRKCETVPHGDHVDFLVGERLVHFADAEHCGDGCSGKGMVHVEDHGSVRVLRRRRGGGKGGDYKPFLSTSAESRGAVESMGETAATIAAKLALEARGGNEPS...
>Desulfotomaculum gibsoniae_767817@357041591
MTQCSGHNCSCVKNNIMEELTSEGLQQPMKVTKPEEKAINNSAPHLNGMQKSVFVLHGLDCADCAAKLEKRIAGLSGVEEATINFGASKMSVRHTTGVPQILRAIKEAGYAAESDHAAATQTNQPLWHDPKLILTVISGLFLAGGMTASLFNLGDRLVIDLLLAAMLSGGYFVVKNDLYSIKALSLDMNVLMSVAAIGAVAIGEWFEGATVVFLFSLGNTLQAYSMAKTRSSIRALMELSPREALVRRDG...
>Methanothermobacter marburgensis_79929@304314567
MGCECSSCSPEEGDKDIRIIAASGALLISGIILSFAGGLISVPFLLASVAAAGYRIFPPAIRSVLRGRFTVNFLILIAAAGAILLGDYTEAALVTVLYNIAEYLEEYAHRRSHRSVESLIKLRPRTARVLGDGENIIKVEEVRSGSIIGIKPGETIPLDGTVTRGRSKVDQSNITGESLPITVQEGSDVFAGTRNLDGYLEVRVTREADNTVLAGVIETVKRAATRRSRRERFIERFASVYTPAVIALAV...
>Klebsiella oxytoca_883120@376378468
MSGSVKNSKTQVREESAGCCEKINLIVGSKMQRSEEPAKAHGHAHDHKDCSAELSHKEHGHGSDKHLHREQGHVKGGHAHEGCSHEHSHTDEEHDHGEEEHSHGDHQHKGCNHDHAQDDQADEHHGHSGDCCSGAPTNLSNLGGSKVVAGGLRTEIRIMQMDCPVEENLIKKKLGAMTSVKELDFNLMQRVLTVTHTPDSLEPILVAIRSLGFVPEVSDNNGEKKNIQEKKKPWWPLALAGVAALAAEVM...
>Staphylococcus aureus_282458@49482927
MDSSAKTLTEDKQVYRVEGFSCANCAGKFEKNVKQLAGVQDAKVNFGASKIDVYGNASVQELEKAGAFENLKVFPEKLANSSMQAVKEDTKAPKEEKIPFYKKHSTLLFATLLIAFGYLSHFVNGEDNLVTSMLFVGSIVIGGYSLFKVGFQNLIRFDFDMKTLMTVAVIGAAIIGEWAEASIVVVLFAISEALERFSMDRARQSIRSLMDIAPKEALVMRNGQEIMIHVDDIAVGDIMIVKPGEKIAMD...
>Staphylococcus aureus_931456@377761869
MEGFSCANCAGKFEKNVKQLAGVQDAKVNFGASKIDVYGNASVQELEKAGAFENLKVFPEKLANSSMQAVKEDTKAPKEEKIPFYKKHSTLLFATLLIAFGYLSHFVNGEDNLVTSMLFVGSIVIGGYSLFKVGFQNLIRFDFDMKTLMTVAVIGAAIIGEWAEASIVVVLFAISEALERFSMDRARQSIRSLMDIAPKEALVMRNGQEIMIHVDDIAVGDIMIVKPGEKIAMDGIIINGVSAVNQAAIT...

test/HMA234-euka.ali  view on Meta::CPAN

**********************************************************************************************************************************************************************************************************************************************************...
>Arabidopsis thaliana_3702@19643720
**********************************************************************************************************************************************************************************************************************************************************...
>Capsella rubella_81985@20893656
**********************************************************************************************************************************************************************************************************************************************************...
>Capsella rubella_81985@20893657
**********************************************************************************************************************************************************************************************************************************************************...
>Brassica rapa_3711@22703739
**********************************************************************************************************************************************************************************************************************************************************...
>Eutrema halophilum_98038@20194930
**********************************************************************************************************************************************************************************************************************************************************...
>Brassica rapa_3711@22710111
**********************************************************************************************************************************************************************************************************************************************************...
>Arabidopsis lyrata_59689@16044560
**********************************************************************************************************************************************************************************************************************************************************...
>Arabidopsis lyrata_59689@16060205
**********************************************************************************************************************************************************************************************************************************************************...
>Arabidopsis thaliana_3702@19641614
**********************************************************************************************************************************************************************************************************************************************************...
>Capsella rubella_81985@20897962
**********************************************************************************************************************************************************************************************************************************************************...

test/HMA234-euka.ali  view on Meta::CPAN

**********************************************************************************************************************************************************************************************************************************************************...
>Zea mays_4577@20833593
**********************************************************************************************************************************************************************************************************************************************************...
>Brachypodium distachyon_15368@21821976
**********************************************************************************************************************************************************************************************************************************************************...
>Hordeum vulgare_4513@MLOC_10131.1
**********************************************************************************************************************************************************************************************************************************************************...
>Hordeum vulgare_4513@MLOC_10131.2
**********************************************************************************************************************************************************************************************************************************************************...
>Setaria italica_4555@19705476
**********************************************************************************************************************************************************************************************************************************************************...
>Sorghum bicolor_4558@1984937
**********************************************************************************************************************************************************************************************************************************************************...
>Zea mays_4577@20882640
**********************************************************************************************************************************************************************************************************************************************************...
>Zea mays_4577@20882641
                                                                                                                                                                                                                                                          ...
>Panicum virgatum_38727@23761139
                                                                                                                                                                                                                                                          ...
>Zea mays_4577@20882642
**********************************************************************************************************************************************************************************************************************************************************...
>Hordeum vulgare_4513@MLOC_52795.2
**********************************************************************************************************************************************************************************************************************************************************...
>Hordeum vulgare_4513@MLOC_52795.4
                                                                                                                                                                                                                                                          ...
>Hordeum vulgare_4513@MLOC_52795.5
**********************************************************************************************************************************************************************************************************************************************************...
>Cryptomeria japonica_3369@194595047.H1.1
                                                                                                                                                                                                                                                          ...
>Picea glauca_3330@CT10130626.H2.1
                                                                                                                                                                                                                                                          ...
>Pinus taeda_3352@68088374.H1.1
                                                                                                                                                                                                                                                          ...
>Physcomitrella patens_3218@18038000
********************************************************************************************************************************************************MESVALVDGGKFPLPSCVDYNEGQHFVVLDENGRPQHV***SLPQE***YADSIKSTELCFKDHRTQDA********SAGVCYLQEAGYFHPHVHR**...
>Syntrichia ruralis_38588@46901640.H1.1
                                                                                                                                                                                                                                                          ...

test/blocks-masked.ali  view on Meta::CPAN

>Q7ZV48_DANRE/23-498 [subseq from] Q7ZV48_DANRE
**RFIFIAGFSL*A**L***C*HF*G*LA**S*Q*L*V*CYFTNWSQYRPDVGKY*MPSNVDPHLCTHLIYAFSII**N********N**eN********K********L****T**T*********Y*******E********W****NRQTFIQSSITFLRTHGFDGLDLDWEYPGS***R***G***S**P**P*EDKQR**FTLLCKELVE**AYQAESAATGRPRLMLTAAVAAGKGNI******...
>I3JC30_ORENI/6-472 [subseq from] I3JC30_ORENI
*****ILAGL*CLV**I***S*QL*G*SA**S*R*M*E*CYFTNWSQYRPGDGKF*LPQNVDPFLCTTLIYAFSII**N*******yN***N********E********L****V**T*********Y*******E********W****NRQKFIQSTIKFLRTHGFDGLDLDWEYPGS***R***G***S**P**P*EDKQR**FTLLCRELVA**AYAAEAKATGNPQLMLTAAVAAGKGTI******...
>H2M4G1_ORYLA/8-471 [subseq from] H2M4G1_ORYLA
*******AGL*CLM**L***C*YL*G*SA**S*R*M*E*CYFTNWSQYRPGDGKF*LPHNVDPFLCTTLIYAFSII**N*******yN***N********E********L****V**T*********Y*******E********W****NRQKFIQSTIKFLRTHGFDGLDLDWEYPGA***R***G***S**P**P*EDKQR**FTLLCQELVA**AFQAEAESSGKPRLMLTAAVAAGKGTI******...
>F1MH27_BOVIN/5-471 [subseq from] F1MH27_BOVIN
****IFLTGLAFLL**N***A*QL*G*SA**Y*Q*L*V*CYFSNWAQYRPGLGSF*KPDNIDPCLCTHLIYAFAGM**S********N***S********E********I****T**T*********I*******E********W****NRKTFISSVIKFLHQYGFDGLDFDWEYPGS***R***G***S**P**S*QDKHL**FTVLVQETRE**AFEQEAKQTNKPRLLVTAAVAAGISNI******...
>Q6PHU7_DANRE/3-478 [subseq from] Q6PHU7_DANRE
**RFIFIAGFSL*A**L***C*HF*G*LA**S*Q*L*V*CYFTNWSQYRPDVGKY*MPSNVDPHLCTHLIYAFSII**N********N**eN********K********L****T**T*********Y*******E********W****NRQTFIQSSITFLRTHGFDGLDLDWEYPGS***R***G***S**P**P*EDKQR**FTLLCKELVE**AYQAESAATGRPRLMLTAAVAAGKGNI******...
>L8I292_9CETA/5-471 [subseq from] L8I292_9CETA
****IFLTGLAFLL**N***A*QL*G*SA**Y*Q*L*V*CYFSNWAQYRPGLGSF*KPDNIDPCLCTHLIYAFAGM**S********N***S********E********I****T**T*********I*******E********W****NRKTFISSVIKFLHQYGFDGLDFDWEYPGS***R***G***S**P**S*QDKHL**FTVLVQETRE**AFEQEAKQTNKPRLLVTAAVAAGISNI******...
>CHIA_MOUSE/7-472 [subseq from] CHIA_MOUSE
******VTGLALLL**N***A*QL*G*SA**Y*N*L*I*CYFTNWAQYRPGLGSF*KPDDINPCLCTHLIYAFAGM**Q********N***N********E********I****T**T*********I*******E********W****NRQTFITSVIKFLRQYGFDGLDLDWEYPGS***R***G***S**P**P*QDKHL**FTVLVKEMRE**AFEQEAIESNRPRLMVTAAVAGGISNI******...
>S7MHD2_MYOBR/82-549 [subseq from] S7MHD2_MYOBR
*******VGLALLV**N***A*QL*G*SA**Y*Q*L*I*CYFTNWAQYRPGLGRF*MPDDIDPCLCTHLIYAFAGM**R********N***N********E********I****T**T*********I*******E********W****NRQTFIASVIRFLRQYDFDGLDFDWEYPGS***R***G***S**P**P*QDKHL**FTVLVQEMRE**AFEQEAKQVNKPRLMVTAAVAGGISNI******...
>Q6P0K5_DANRE/3-478 [subseq from] Q6P0K5_DANRE
**RFIFIAGFSL*A**L***C*HF*G*LA**S*Q*L*V*CYFTNWSQYRPDVGKY*MPSNVDPHLCTHLIYAFSII**N********N**eN********K********L****T**T*********Y*******E********W****NRQTFIQSSITFLRTHGFDGLDLDWEYPGS***R***G***S**P**P*EDKQR**FTLLCKELVE**AYQAESAATGRPRLMLTAAVAAGKGNI******...
>G1PCP7_MYOLU/12-476 [subseq from] G1PCP7_MYOLU
********************W*GT*G*SA**Y*H*L*T*CYFTNWAQYRPGLGRF*TPDDIDPCLCTHLIYAFAGM**R********N***N********E********I****T**T*********I*******E********W****NRQTFIASVIRFLRQYDFDGLDFDWEYPGS***R***G***S**P**P*QDKHL**FTVLVQEMRE**AFEQEAKQVNKPRLMVTAAVAGGISNI******...
>H3C0K7_TETNG/16-469 [subseq from] H3C0K7_TETNG

test/blocks-masked.ali  view on Meta::CPAN

>G3WHQ2_SARHA/455-510 [subseq from] G3WHQ2_SARHA
                                                                                                                                                                                                                                                          ...
>G3NH45_GASAC/5-479 [subseq from] G3NH45_GASAC
****IPWEQLYTLC**N***L*KY*N*YT**I*K*L*V*CYFTNWSQYRPGVGKY*LPADVDPNLCTHLIYAFSII**S*******hS***N********E********L****A**P*********Y*******E********W****NRERFIQSSIKYLRQYGFDGLDLDWEYPGA***R***G***S**P**P*EDKKR**FTVLCQEFLA**AFKKEAAETKRPRLLLTAAVAAGKGNI******...
>F7BCG8_MONDO/18-449 [subseq from] F7BCG8_MONDO
*************************G*AT**F*K*L*V*CYFTNWSQYRPDPAKY*MPENVDPCMCTHLIYAFATM**S********N***N********K********I****A**P*********Y*******E********W****NRKIFIDSVIEYLRQYGFDGIDLDFEYPGS***R***G***S**P**P*EDKQR**FTILIEEMLA**AFEAEAQATNRPRLLISAAVSAGKGTI******...
>F7J9X3_9TELE/11-489 [subseq from] F7J9X3_9TELE
**********ALLL**H***A*QL*G*SS**Y*I*L*S*CYFTNWAQYRPPPTIY*MPNDIDPCLCTHLLYAFATI**K********N***N********Q********L****A**T*********Y*******E********W****NRQTFIKSVISFLRQYEFDGLDIDWEYPAN***R***G***G**S**P*EDKQY**YSVFLEEMRA**AFENEAKQSNKARLLMSAAVSAGKDTI******...
>I3KJP2_ORENI/2-488 [subseq from] I3KJP2_ORENI
*ARVTILAGLSLLI**C***L*QV*V*SS**T*K*L*A*CYFTNWSQYRPGAGRY*IPENVDPNLCTHLIYAFSVI**S*******pS***N********E********I****T**M*********Y*******E********W****NRQTFIQSCIRFLRLHGFDGLDLDWEYPGA***R***G***S**P**P*EDKKR**YTVLLQELLA**AFEKEATETKQPRLLLTAAVAGGKGNI******...
>T0NRJ1_9CETA/3-487 [subseq from] T0NRJ1_9CETA
************KL**I***L*LT*G*SA**Y*Q*L*T*CYFTNWAQYRPDLGSF*KPDNIDTCLCTHLIYAFAGM**R********D***N********K********I****T**T*********M*******E********W****NRQTFIASVIKFLRQYGFDGLDFDWEYPGS***R***G***S**P**L*QDKHL**FTVLVQEMRE**AFEQEAEQTNKPRLLVTAAVAAGISNI******...
>G9MD29_SCOJP/11-488 [subseq from] G9MD29_SCOJP
**********ALLL**H***A*QL*G*SS**F*I*L*S*CYFTNWAQYRPPPTIY*MPNDIDPCLCTHLLYAFATI**K********N***N********Q********L****A**T*********F*******E********W****NRQTFITSVITFLRKYEFDGLDIDWEYPAN***R***G***G**A**A*DDKEN**YSVFLEEMRA**AFENEAKQSNRARLLMSAAVSAGKDTI******...
>D2CZD1_EPICO/11-403 [subseq from] D2CZD1_EPICO
**********ALLL**H***A*QL*G*SS**Y*I*L*S*CYFTNWAQYRPPPTIY*MPTDIDPCLCTHLLYAFATI**K********N***N********Q********L****A**T*********Y*******E********W****NRQTFINSVITFLRKYEFDGLDIDWEYPAN***R***G***G**S**Y*QDKQY**YSVFLEEMRA**AFENEAKQSNKARLLMSAALSAGKATI******...
>D2CZD1_EPICO/436-493 [subseq from] D2CZD1_EPICO
                                                                                                                                                                                                                                                          ...
>G3PFZ3_GASAC/11-488 [subseq from] G3PFZ3_GASAC
**********ALLL**H***A*QL*G*SS**F*I*L*S*CYFTNWAQYRPPPTIF*MPNDIDPCLCTHLLYAFATI**K********N***N********Q********L****A**T*********Y*******E********W****NRQTFINSVISFLRKYEFDGLDIDWEYPAN***R***G***G**S**P*QDKQY**YSVFLEEMRA**AFETEAKQSNKARLLMSAAVAAGKANI******...
>F2ZB49_9TELE/11-418 [subseq from] F2ZB49_9TELE

test/blocks.ali  view on Meta::CPAN

>Q7ZV48_DANRE/23-498 [subseq from] Q7ZV48_DANRE
**RFIFIAGFSL*A**L***C*HF*G*LA**S*Q*L*V*CYFTNWSQYRPDVGKY*MPSNVDPHLCTHLIYAFSII**N********N**eN********K********L****T**T*********Y*******E********W****N*****D*******E******T******L******Y*****QSFNGLKQS****NPNLKTLLAVGGWN***FG**TT**********QFSSMVSTP*Q*NR...
>I3JC30_ORENI/6-472 [subseq from] I3JC30_ORENI
*****ILAGL*CLV**I***S*QL*G*SA**S*R*M*E*CYFTNWSQYRPGDGKF*LPQNVDPFLCTTLIYAFSII**N*******yN***N********E********L****V**T*********Y*******E********W****N*****D*******D******V******L******Y*****KSFNNLKTK****NPHLKTLLAVGGWN***FG**ST**********QFSIMVSTA*A*NR...
>H2M4G1_ORYLA/8-471 [subseq from] H2M4G1_ORYLA
*******AGL*CLM**L***C*YL*G*SA**S*R*M*E*CYFTNWSQYRPGDGKF*LPHNVDPFLCTTLIYAFSII**N*******yN***N********E********L****V**T*********Y*******E********W****N*****D*******D******I******L******Y*****KAFNDLKNK****NPHLKTLLAVGGWN***FG**SG**********QFAIMVSTP*G*NR...
>F1MH27_BOVIN/5-471 [subseq from] F1MH27_BOVIN
****IFLTGLAFLL**N***A*QL*G*SA**Y*Q*L*V*CYFSNWAQYRPGLGSF*KPDNIDPCLCTHLIYAFAGM**S********N***S********E********I****T**T*********I*******E********W****N*****D*******V******A******L******Y*****SSFNDLKKK****NSQLKILLAIGGWN***FG**TA**********PFTAMVATP*E*NR...
>Q6PHU7_DANRE/3-478 [subseq from] Q6PHU7_DANRE
**RFIFIAGFSL*A**L***C*HF*G*LA**S*Q*L*V*CYFTNWSQYRPDVGKY*MPSNVDPHLCTHLIYAFSII**N********N**eN********K********L****T**T*********Y*******E********W****N*****D*******E******T******L******Y*****QSFNGLKQS****NPNLKTLLAVGGWN***FG**TT**********QFSSMVSTP*Q*NR...
>L8I292_9CETA/5-471 [subseq from] L8I292_9CETA
****IFLTGLAFLL**N***A*QL*G*SA**Y*Q*L*V*CYFSNWAQYRPGLGSF*KPDNIDPCLCTHLIYAFAGM**S********N***S********E********I****T**T*********I*******E********W****N*****D*******V******A******L******Y*****SSFNDLKKK****NSQLKILLAIGGWN***FG**TA**********PFTAMVATP*E*NR...
>CHIA_MOUSE/7-472 [subseq from] CHIA_MOUSE
******VTGLALLL**N***A*QL*G*SA**Y*N*L*I*CYFTNWAQYRPGLGSF*KPDDINPCLCTHLIYAFAGM**Q********N***N********E********I****T**T*********I*******E********W****N*****D*******V******T******L******Y*****KAFNDLKNR****NSKLKTLLAIGGWN***FG**TA**********PFTTMVSTS*Q*NR...
>S7MHD2_MYOBR/82-549 [subseq from] S7MHD2_MYOBR
*******VGLALLV**N***A*QL*G*SA**Y*Q*L*I*CYFTNWAQYRPGLGRF*MPDDIDPCLCTHLIYAFAGM**R********N***N********E********I****T**T*********I*******E********W****N*****D*******V******T******L******Y*****QAFNGLKNK****NSQLKTLLAIGGWN***FG**TA**********PFTAMVSTP*E*NR...
>Q6P0K5_DANRE/3-478 [subseq from] Q6P0K5_DANRE
**RFIFIAGFSL*A**L***C*HF*G*LA**S*Q*L*V*CYFTNWSQYRPDVGKY*MPSNVDPHLCTHLIYAFSII**N********N**eN********K********L****T**T*********Y*******E********W****N*****D*******E******T******L******Y*****QSFNGLKQS****NPNLKTLLAVGGWN***FG**TT**********QFSSMVSTP*Q*NR...
>G1PCP7_MYOLU/12-476 [subseq from] G1PCP7_MYOLU
********************W*GT*G*SA**Y*H*L*T*CYFTNWAQYRPGLGRF*TPDDIDPCLCTHLIYAFAGM**R********N***N********E********I****T**T*********I*******E********W****N*****D*******V******T******L******Y*****QAFNGLKNK****NSQLKTLLAIGGWN***FG**TA**********PFTAMVSTP*E*NR...
>H3C0K7_TETNG/16-469 [subseq from] H3C0K7_TETNG

test/blocks.ali  view on Meta::CPAN

>G3WHQ2_SARHA/455-510 [subseq from] G3WHQ2_SARHA
**********************************************************************************************************************************************************************************************************************************************************...
>G3NH45_GASAC/5-479 [subseq from] G3NH45_GASAC
****IPWEQLYTLC**N***L*KY*N*YT**I*K*L*V*CYFTNWSQYRPGVGKY*LPADVDPNLCTHLIYAFSII**S*******hS***N********E********L****A**P*********Y*******E********W****N*****D*******D******I******L******Y*****KSFNDLKNR****NPELKTLLAVGGWN***FG**SR**********QFTIMASSP*A*NR...
>F7BCG8_MONDO/18-449 [subseq from] F7BCG8_MONDO
*************************G*AT**F*K*L*V*CYFTNWSQYRPDPAKY*MPENVDPCMCTHLIYAFATM**S********N***N********K********I****A**P*********Y*******E********W****N*****D*******D******V******L******Y*****PRFQALKQH****NENLVTLLAIGGWN***FG**TQ**********KFTTMVATA*G*NR...
>F7J9X3_9TELE/11-489 [subseq from] F7J9X3_9TELE
**********ALLL**H***A*QL*G*SS**Y*I*L*S*CYFTNWAQYRPPPTIY*MPNDIDPCLCTHLLYAFATI**K********N***N********Q********L****A**T*********Y*******E********W****N*****D*******V******E******L******Y*****GQFNALKNK****NGNLKTLLSVGGWN***FG**ST**********GFSQMVLSP*A*NR...
>I3KJP2_ORENI/2-488 [subseq from] I3KJP2_ORENI
*ARVTILAGLSLLI**C***L*QV*V*SS**T*K*L*A*CYFTNWSQYRPGAGRY*IPENVDPNLCTHLIYAFSVI**S*******pS***N********E********I****T**M*********Y*******E********W****N*****D*******D******V******L******Y*****RSFNALKNR****NPQLKTLLAVGGWN***FG**TA**********QFTIMASTP*A*SR...
>T0NRJ1_9CETA/3-487 [subseq from] T0NRJ1_9CETA
************KL**I***L*LT*G*SA**Y*Q*L*T*CYFTNWAQYRPDLGSF*KPDNIDTCLCTHLIYAFAGM**R********D***N********K********I****T**T*********M*******E********W****N*****D*******V******T******L******Y*****QSFNGLKNK****NNQLKTLLAIGGWN***FG**TA**********RFTAMVSTQ*E*NR...
>G9MD29_SCOJP/11-488 [subseq from] G9MD29_SCOJP
**********ALLL**H***A*QL*G*SS**F*I*L*S*CYFTNWAQYRPPPTIY*MPNDIDPCLCTHLLYAFATI**K********N***N********Q********L****A**T*********F*******E********W****N*****D*******V******E******L******Y*****SQFNGLKNQ****NGNLKTLLSVGGWN***YG**ST**********GFSQMVSSP*A*NR...
>D2CZD1_EPICO/11-403 [subseq from] D2CZD1_EPICO
**********ALLL**H***A*QL*G*SS**Y*I*L*S*CYFTNWAQYRPPPTIY*MPTDIDPCLCTHLLYAFATI**K********N***N********Q********L****A**T*********Y*******E********W****N*****D*******V******E******L******Y*****GQFNALKNK****NGNLKTLLSVGGWN***FG**ST**********GFSNMVLSS*A*NR...
>D2CZD1_EPICO/436-493 [subseq from] D2CZD1_EPICO
**********************************************************************************************************************************************************************************************************************************************************...
>G3PFZ3_GASAC/11-488 [subseq from] G3PFZ3_GASAC
**********ALLL**H***A*QL*G*SS**F*I*L*S*CYFTNWAQYRPPPTIF*MPNDIDPCLCTHLLYAFATI**K********N***N********Q********L****A**T*********Y*******E********W****N*****D*******V******E******L******Y*****SQFNALKNK****NGNLKTLLSVGGWN***FG**ST**********GFSQMVLSP*T*NR...
>F2ZB49_9TELE/11-418 [subseq from] F2ZB49_9TELE

test/filter.fasta  view on Meta::CPAN

>Echinops sp.@296090298
-------------------------------------MATKKWQKSYFDVLGLCCSSEVP
LIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGE----
VAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLD
INILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIA
DTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVAKQKDSTVWA
GTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKSKTQRFIDKCTKFYTP--------
------VVVLISAGLAGIPAALRVHDLSHWFHLSLVVLVSACPCALILSTPVATFCALSK
AAVSGLLIKGGEYLEILAKIRIMAFDKTGTITRGEFVVKDFQSLRDDVSSDTLLYWVSSI
ESKSSHPMAAALFDYGLSQSVEPKPENVEEFQNFPGEGIHGKIDGKDIYVGNRKIALRAG
CETVPTI--GEDKEGKTIGYVYSDATPTGIFTLSDACRTGVVEAIKELKLLGIKSAMLTG
DSHASAMHTQDQLGHTLEVVHAELLPEDKARIIKDFK-EEGPTAMIGDGVNDAPALATAD
IGISMGIAGSALATETGHVVLMTNDIRKIPKAVRLARKTHRKVVENVILSITTKAAILAL
AIAGHPLIWAAVLADVATHLIIISIVVPTAFLKRSVSLRSVLPRGVLQ------------
-------------------DVSLIIPG---------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------

test/filter.fasta  view on Meta::CPAN

>Oryza sativa_39947@315623028
-----------------------------------MAAEGGRCQKSYFDVLGICCPSEVP
LVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQTRLEASVRAYGNG--S
EKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLD
VNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILA
ETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGESFPVSKQPDSQVWA
GTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSSTQRLIDTCAKYYTP--------
------AVVVMAGSVAAIPAIAKAHNLKHWFQLALVLLVSACPCALVLSTPIATFCALLR
AARTGLLIKGGDVLESLASIKVAAFDKTGTITRGEFSVEEFQPVGERVSLQQLLYWVSSV
ESRSSHPMASVLVDYAQSKSVEPKSENVSEFQIYPGEGIYGEIDGAGIYIGNKRILSRAS
CETVPDM---KDMKGVTIGYVACNNELIGVFTLSDACRTGSAEAIKELRSLGIKSVMLTG
DSSAAATYAQNQLGNILAEVHAELLPEDKVRIVGELKEKDGPTLMVGDGMNDAPALAKAD
VGVSMGVSGSAVAMETSHVALMSNDIRRIPKAVRLARRTHRTIIVNIIFSVITKLAIVGL
AFAGHPLIWAAVLADVGTCLLVIMYSMLLLREKDSRKAKKCAASHHGSP-----------
-----------------KKCCSSSHHG-SHAKK-------NHGVSHHCSDGPC---KSMV
SCKESSVAKNACHDHHHEHNH------HEEPAHKHSSN-----QHGC-------HDHSHG
HSNCKEPSN--QLITNKHACHDGHN---HCADT-SNLH-------DTKKHDCHG----HE
HSTCKEELNALPPTNDHACHGHEHSHCEEPVALH--------------STGEHACHEHE-
---HEHIHCDE-----------PIGSHCADKHACHDHEQ-V--HEHHCCDEQQTPHTADL
HPCHDHDHDNLE--VEEVKDCHAEPPHHHNHCCHEPHDQVKNDTHPVQEHSISIEESSDH
H-------EHHH------------NEEHKAEDCGHHP-------------KPKDCAPPPT

test/filter.fasta  view on Meta::CPAN

>Sorghum bicolor_4558@242096926
--------------------------------MGDAAVPAGTLQKSYFDVLGICCPSEVP
LVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALNQARLEASVRAYGSG-SE
EKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLRSFAAARRLTLD
VNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSLMSMTPQKAVLA
ETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFPVAKQPDSQVWA
GTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSKTQRLIDTCAKYYTP--------
------AVVVMAAGVAVIPVAIRAHHLKHWFQLALVLLVSACPCALVLSTPVATFCALLT
AARTGLLIKGGDVLETLARIKIAAFDKTGTITRGEFCVEEFQAVGERIPMQQLLYWVSSI
ESRSSHPMASVLVDYALSKSVEPKSDNVTEFQIYPGEGIYGEIDGEGVYIGNKRILSRAS
CETVPDM---KDMKGVTIGYVACKGQLIGVFTLSDSCRTGSAEAIRELRSLGIKSVMLTG
DSSAAASYAQNQLGNILDEVHPELLPEDKVRIVDELKAKHGPTLMIGDGMNDAPALAKAD
VGVSMGVSGSAVAMETSHITLMSNDIRRIPKAIQLARRTHRTIIVNIIFSVITKLAIVGL
ALSGHPLIWAAVLADVGTCMLVIMYSMLLLRSKGGRKA----------------------
-----------------KKCCASSQHG-SHA-K-------KHCVSRHCSDGPC---KSTG
CSKESSAGKHGCHDHGHAHTH------CKEPSSQHPTE-----KHAC-------HDHGHS
HNHCKEPSS--HVVTEKHVCHDHGNTHNHCKEAGNQLL-------LVEGHGCHD----RD
HGHSHEH------TGKQDCHGHEHSHCKEPKTPR--------------ADSEGACHGHGH
DHGHEHRHCEG-----------DSHSHATGELGCHEHSTVEHACEHQCHAEQQTVHTAET
HHCHDHEHGQHKHDHGEIEEPEKDCHDHSHHCCHEPHDKDKTPAEPVEEVTISIAALPKD
E-------GHHH------------SEEHKGEHCGKAK-------------DC--GVPAPT

test/gb_medium.fasta  view on Meta::CPAN

>Vitis_vinifera_29760@296090298
QKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALN
QARLEANVRIYGAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWR
GIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSL
MSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFP
VAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKSKTQRFIDKCTKF
YTPVVVLISAGLAGIPAALRVHDLSHWFHLSLVVLVSACPCALILSTPVATFCALSKAAV
SGLLIKGGEYLEILAKIRIMAFDKTGTITRGEFVVKDFQSLRDDVSSDTLLYWVSSIESK
SSHPMAAALFDYGLSQSVEPKPENVEEFQNFPGEGIHGKIDGKDIYVGNRKIALRAGCET
-GKTIGYVYSDATPTGIFTLSDACRTGVVEAIKELKLLGIKSAMLTGDSHASAMHTQDQL
GHTLEVVHAELLPEDKARIIKDFK-EEGPTAMIGDGVNDAPALATADIGISMGIAGSALA
TETGHVVLMTNDIRKIPKAVRLARKTHRKVVENVILSITTKAAILALAIAGHPLIWAAVL
ADVATHLIIISIVVPTAFLK-----------------------------
>Medicago_truncatula_3880@357479567
QKSYFDVVGLCCSSEVPLIENILKPLQGVKEVSVIVPSRTVIVVHDTLLISQLQIVKALN
QARLEANIRIYGNHKKKWPSIYSVASGLLLLLSFLKFVYTPFKYVALAAVVAGIYPIFLK
AIVSIRNLRIDINILVIIAVAGTIAMNDYLEAGTIVFLFSISDWLESSASHKSNAVMTSL
MSIAPQKAVIAETGEDVDVDEVRVNTILAVKAGEIIPIDGIIVDGDCEVDEKTLTGESFP
VAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMTKLVEDAQNSKTSTQRLIDKFAKF

test/gb_medium.fasta  view on Meta::CPAN

SETGNIILMSNDIRKIPEAIKLARKARRKVLENIVLSIMTKAAILGLAIGGHPLVWAAVV
ADVGTCLLVIFNSML--LLRHQHQHEQHNHDQHDQHEHHNHHCHLIHGC
>Oryza_sativa_39947@315623028
QKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALN
QTRLEASVRAYGKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLR
SIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSAL
MSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGESFP
VSKQPDSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSSTQRLIDTCAKY
YTPAVVVMAGSVAAIPAIAKAHNLKHWFQLALVLLVSACPCALVLSTPIATFCALLRAAR
TGLLIKGGDVLESLASIKVAAFDKTGTITRGEFSVEEFQPVGERVSLQQLLYWVSSVESR
SSHPMASVLVDYAQSKSVEPKSENVSEFQIYPGEGIYGEIDGAGIYIGNKRILSRASCET
VGVTIGYVACNNELIGVFTLSDACRTGSAEAIKELRSLGIKSVMLTGDSSAAATYAQNQL
GNILAEVHAELLPEDKVRIVGELKEKDGPTLMVGDGMNDAPALAKADVGVSMGVSGSAVA
METSHVALMSNDIRRIPKAVRLARRTHRTIIVNIIFSVITKLAIVGLAFAGHPLIWAAVL
ADVGTCLLVIMYSMLLLREKHNHHEEPAHKHSSNQHGCHDHHTADLHPC
>Sorghum_bicolor_4558@242096926
QKSYFDVLGICCPSEVPLVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALN
QARLEASVRAYGKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLR
SFAAARRLTLDVNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSL
MSMTPQKAVLAETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFP
VAKQPDSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSKTQRLIDTCAKY
YTPAVVVMAAGVAVIPVAIRAHHLKHWFQLALVLLVSACPCALVLSTPVATFCALLTAAR
TGLLIKGGDVLETLARIKIAAFDKTGTITRGEFCVEEFQAVGERIPMQQLLYWVSSIESR
SSHPMASVLVDYALSKSVEPKSDNVTEFQIYPGEGIYGEIDGEGVYIGNKRILSRASCET
VGVTIGYVACKGQLIGVFTLSDSCRTGSAEAIRELRSLGIKSVMLTGDSSAAASYAQNQL
GNILDEVHPELLPEDKVRIVDELKAKHGPTLMIGDGMNDAPALAKADVGVSMGVSGSAVA
METSHITLMSNDIRRIPKAIQLARRTHRTIIVNIIFSVITKLAIVGLALSGHPLIWAAVL
ADVGTCMLVIMYSMLLLRSKHTHCKEPSSQHPTEKHACHDHHTAETHHC
>Brachypodium_distachyon_15368@357123620
EKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVVHDAAAISQSQIVKALN
QARLEASVRAYGKISNKFPSPYVLVCGALLVVSLFEHFWPPLKWFALAGAAAGLPPIVLR
SVAAARRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASRKATAGMSSL
MSMAPQNAVLAETGQVVATQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFP
VSKQADSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSNTQRLIDTCAKY

test/gb_strict.fasta  view on Meta::CPAN

>Vitis_vinifera_29760@296090298
KSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQ
ARLEANVRIYGAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRG
IVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLM
SAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVA
KQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVVLISAGLAGIPAALRVHDLSHW
FHLSLVVLVSACPCALILSTPVATFCALSKAAVSGLLIKGGEYLEILAKIRIMAFDKTGT
ITRGEFVVKDFQSLRDDVSSDTLLYWVSSIESKSSHPMAAALFDYGLSQSVEPKENVEEF
QNFPGEGIHGKIDGKDIYVGNRKIALRAGCETGIKSAMLTGDSHASAMHTQDQLGHVHAE
LLPEDKARIIKDFKGPTAMIGDGVNDAPALATADIGISMGIAGSALATETGHVVLMTNDI
RKIPKAVRLARKTHRKVVENVILSITTKAAILALAIAGHPLIWAAVLADVATHLIIISIV
VP
>Medicago_truncatula_3880@357479567
KSYFDVVGLCCSSEVPLIENILKPLQGVKEVSVIVPSRTVIVVHDTLLISQLQIVKALNQ
ARLEANIRIYGNHKKKWPSIYSVASGLLLLLSFLKFVYTPFKYVALAAVVAGIYPIFLKA
IVSIRNLRIDINILVIIAVAGTIAMNDYLEAGTIVFLFSISDWLESSASHKSNAVMTSLM
SAPQKAVIAETGEDVDVDEVRVNTILAVKAGEIIPIDGIIVDGDCEVDEKTLTGESFPVA
KQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMTKLVIFISTLVAVVPVVLKVHNEKYW
LHFALVVLVSACPCALILSTPVATFCAYTKAATSGLLIKGGHALETLAKIKVMAFDKTGT

test/gb_strict.fasta  view on Meta::CPAN

RKIPEAIKLARKARRKVLENIVLSIMTKAAILGLAIGGHPLVWAAVVADVGTCLLVIFNS
ML
>Oryza_sativa_39947@315623028
KSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQ
TRLEASVRAYGKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRS
IAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALM
SAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGESFPVS
KQPDSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVVVMAGSVAAIPAIAKAHNLKHW
FQLALVLLVSACPCALVLSTPIATFCALLRAARTGLLIKGGDVLESLASIKVAAFDKTGT
ITRGEFSVEEFQPVGERVSLQQLLYWVSSVESRSSHPMASVLVDYAQSKSVEPKENVSEF
QIYPGEGIYGEIDGAGIYIGNKRILSRASCETGIKSVMLTGDSSAAATYAQNQLGNVHAE
LLPEDKVRIVGELKGPTLMVGDGMNDAPALAKADVGVSMGVSGSAVAMETSHVALMSNDI
RRIPKAVRLARRTHRTIIVNIIFSVITKLAIVGLAFAGHPLIWAAVLADVGTCLLVIMYS
ML
>Sorghum_bicolor_4558@242096926
KSYFDVLGICCPSEVPLVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALNQ
ARLEASVRAYGKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLRS
FAAARRLTLDVNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSLM
STPQKAVLAETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFPVA
KQPDSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVVVMAAGVAVIPVAIRAHHLKHW
FQLALVLLVSACPCALVLSTPVATFCALLTAARTGLLIKGGDVLETLARIKIAAFDKTGT
ITRGEFCVEEFQAVGERIPMQQLLYWVSSIESRSSHPMASVLVDYALSKSVEPKDNVTEF
QIYPGEGIYGEIDGEGVYIGNKRILSRASCETGIKSVMLTGDSSAAASYAQNQLGNVHPE
LLPEDKVRIVDELKGPTLMIGDGMNDAPALAKADVGVSMGVSGSAVAMETSHITLMSNDI
RRIPKAIQLARRTHRTIIVNIIFSVITKLAIVGLALSGHPLIWAAVLADVGTCMLVIMYS
ML
>Brachypodium_distachyon_15368@357123620
KSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVVHDAAAISQSQIVKALNQ
ARLEASVRAYGKISNKFPSPYVLVCGALLVVSLFEHFWPPLKWFALAGAAAGLPPIVLRS
VAAARRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASRKATAGMSSLM
SAPQNAVLAETGQVVATQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFPVS
KQADSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVVLMSGAVALIPVIVRAHNLKHW
FQLALVLLVSACPCALVLSTPVATFCALLRAARTGLLIKGGDVLESLASIKVAAFDKTGT

test/gblocks.fasta  view on Meta::CPAN

>Vitis vinifera_29760@296090298
-------------------------------------MATKKWQKSYFDVLGLCCSSEVP
LIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGE----
VAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLD
INILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIA
DTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVAKQKDSTVWA
GTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKSKTQRFIDKCTKFYTPV-------
-------VVLISAGLAGIPAALRVHDLSHWFHLSLVVLVSACPCALILSTPVATFCALSK
AAVSGLLIKGGEYLEILAKIRIMAFDKTGTITRGEFVVKDFQSLRDDVSSDTLLYWVSSI
ESKSSHPMAAALFDYGLSQSVEPKPENVEEFQNFPGEGIHGKIDGKDIYVGNRKIALRAG
CET-VPTI-GEDKEGKTIGYVYSDATPTGIFTLSDACRTGVVEAIKELKLLGIKSAMLTG
DSHASAMHTQDQLGHTLEVVHAELLPEDKARIIKDFK-EEGPTAMIGDGVNDAPALATAD
IGISMGIAGSALATETGHVVLMTNDIRKIPKAVRLARKTHRKVVENVILSITTKAAILAL
AIAGHPLIWAAVLADVATHLIIISIVVPTAFLKRSVSLRSVLPRGVLQDVSLIIPG----
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------

test/gblocks.fasta  view on Meta::CPAN

>Oryza sativa_39947@315623028
-----------------------------------MAAEGGRCQKSYFDVLGICCPSEVP
LVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQTRLEASVRAYGNGS-E
-KITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLD
VNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILA
ETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGESFPVSKQPDSQVWA
GTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSSTQRLIDTCAKYYTPA-------
-------VVVMAGSVAAIPAIAKAHNLKHWFQLALVLLVSACPCALVLSTPIATFCALLR
AARTGLLIKGGDVLESLASIKVAAFDKTGTITRGEFSVEEFQPVGERVSLQQLLYWVSSV
ESRSSHPMASVLVDYAQSKSVEPKSENVSEFQIYPGEGIYGEIDGAGIYIGNKRILSRAS
CETV-PDM--KDMKGVTIGYVACNNELIGVFTLSDACRTGSAEAIKELRSLGIKSVMLTG
DSSAAATYAQNQLGNILAEVHAELLPEDKVRIVGELKEKDGPTLMVGDGMNDAPALAKAD
VGVSMGVSGSAVAMETSHVALMSNDIRRIPKAVRLARRTHRTIIVNIIFSVITKLAIVGL
AFAGHPLIWAAVLADVGTCLLVIMYSMLLLREKDSRKAKK--------CAAS-HHGSPKK
CCSSSHHGSH-----------AKKNHGVSHHCSDGPC---KSMVSCKESSVAKNACHDHH
HE---HNHHEEPAHKHSSNQHGCHDHS--------------HGHSNCKEPSNQLITNKHA
CHD---GH---NHCADTSN-LHDTKKHDCHGH----EHSTCKEELNALPPTNDHACHGHE
HSHCEEP----------VALHSTGEHACHEHE----HEHIHCDE-----------PIGSH
CADKHACHDHEQV---HEHHCCDEQQTPHTADLHPCHDHDHDNLEVE--EVKDCHAEPPH
HHNHCCHEPHDQVKNDTHPVQEHSISIEESSDHH------EHHHNEEHKAEDCGHHPKPK
-DCA-PPPTDCIS-RNCCSN--------TSKGKDICSSLHRDHHTSQASRCCRSYVKCSR

test/gblocks.fasta  view on Meta::CPAN

>Sorghum bicolor_4558@242096926
-----------------------------MG---DAAVPAGTLQKSYFDVLGICCPSEVP
LVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALNQARLEASVRAYGSGS-E
EKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLRSFAAARRLTLD
VNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSLMSMTPQKAVLA
ETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFPVAKQPDSQVWA
GTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSKTQRLIDTCAKYYTPA-------
-------VVVMAAGVAVIPVAIRAHHLKHWFQLALVLLVSACPCALVLSTPVATFCALLT
AARTGLLIKGGDVLETLARIKIAAFDKTGTITRGEFCVEEFQAVGERIPMQQLLYWVSSI
ESRSSHPMASVLVDYALSKSVEPKSDNVTEFQIYPGEGIYGEIDGEGVYIGNKRILSRAS
CETV-PDM--KDMKGVTIGYVACKGQLIGVFTLSDSCRTGSAEAIRELRSLGIKSVMLTG
DSSAAASYAQNQLGNILDEVHPELLPEDKVRIVDELKAKHGPTLMIGDGMNDAPALAKAD
VGVSMGVSGSAVAMETSHITLMSNDIRRIPKAIQLARRTHRTIIVNIIFSVITKLAIVGL
ALSGHPLIWAAVLADVGTCMLVIMYSMLLLRSKGGRKAKK--------------------
CCASSQHGSH-----------AK-KHCVSRHCSDGPC---KSTGCSKESSAGKHGCHDHG
HA---HTHCKEPSSQHPTEKHACHDHG--------------HSHNHCKEPSSHVVTEKHV
CHD---HGNTHNHCKEAGNQLLLVEGHGCHDR----DHGHSH------EHTGKQDCHGHE
HSHCKEP----------KTPRADSEGACHGHGHDHGHEHRHCEG-----------DSHSH
ATGELGCHEHSTVEHACEHQCHAEQQTVHTAETHHCHDHEHGQHKHDHGEIEEPEKDCHD
HSHHCCHEPHDKDKTPAEPVEEVTISIAALPKDE------GHHHSEEHKGEHCGKA---K
-DCGVPAPTDCAASKNCCSV----------KGGDTCSSSQA-ACAKETSPCCRSYVKCPK

test/gblocks_gaps.fasta  view on Meta::CPAN

>Vitis vinifera_29760@296090298
-------------------------------------MATKKWQKSYFDVLGLCCSSEV-
LIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGE----
VAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLD
INILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIA
DTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVAKQKDSTVWA
GTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKSKTQRFIDKCTKFYTPV-------
-------VVLISAGLAGIPAALRVHDLSHWFHLSLVVLVSACPCALILSTPVATFCALSK
AAVSGLLIKGGEYLEILAKIRIMAFDKTGTITRGEFVVKDFQSLRDDVSSDTLLYWVSSI
ESKSSHPMAAALFDYGLSQSVEPKPENVEEFQNFPGEGIHGKIDGKDIYVGNRKIALRAG
CET-VPTI-GEDKEGKTIGYVYSDATPTGIFTLSDACRTGVVEAIKELKLLGIKSAMLTG
DSHASAMHTQDQLGHTLEVVHAELLPEDKARIIKDFK-EEGPTAMIGDGVNDAPALATAD
IGISMGIAGSALATETGHVVLMTNDIRKIPKAVRLARKTHRKVVENVILSITTKAAILAL
AIAGHPLIWAAVLADVATHLIIISIVVPTAFLKRSVSLRSVLPRGVLQDVSLIIPG----
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------

test/gblocks_gaps.fasta  view on Meta::CPAN

>Oryza sativa_39947@315623028
-----------------------------------MAAEGGRCQKSYFDVLGICCPSEV-
LVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQTRLEASVRAYGNGS-E
-KITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLD
VNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILA
ETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGESFPVSKQPDSQVWA
GTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSSTQRLIDTCAKYYTPA-------
-------VVVMAGSVAAIPAIAKAHNLKHWFQLALVLLVSACPCALVLSTPIATFCALLR
AARTGLLIKGGDVLESLASIKVAAFDKTGTITRGEFSVEEFQPVGERVSLQQLLYWVSSV
ESRSSHPMASVLVDYAQSKSVEPKSENVSEFQIYPGEGIYGEIDGAGIYIGNKRILSRAS
CETV-PDM--KDMKGVTIGYVACNNELIGVFTLSDACRTGSAEAIKELRSLGIKSVMLTG
DSSAAATYAQNQLGNILAEVHAELLPEDKVRIVGELKEKDGPTLMVGDGMNDAPALAKAD
VGVSMGVSGSAVAMETSHVALMSNDIRRIPKAVRLARRTHRTIIVNIIFSVITKLAIVGL
AFAGHPLIWAAVLADVGTCLLVIMYSMLLLREKDSRKAKK--------CAAS-HHGSPKK
CCSSSHHGSH-----------AKKNHGVSHHCSDGPC---KSMVSCKESSVAKNACHDHH
HE---HNHHEEPAHKHSSNQHGCHDHS--------------HGHSNCKEPSNQLITNKHA
CHD---GH---NHCADTSN-LHDTKKHDCHGH----EHSTCKEELNALPPTNDHACHGHE
HSHCEEP----------VALHSTGEHACHEHE----HEHIHCDE-----------PIGSH
CADKHACHDHEQV---HEHHCCDEQQTPHTADLHPCHDHDHDNLEVE--EVKDCHAEPPH
HHNHCCHEPHDQVKNDTHPVQEHSISIEESSDHH------EHHHNEEHKAEDCGHHPKPK
-DCA-PPPTDCIS-RNCCSN--------TSKGKDICSSLHRDHHTSQASRCCRSYVKCSR

test/gblocks_gaps.fasta  view on Meta::CPAN

>Sorghum bicolor_4558@242096926
-----------------------------MG---DAAVPAGTLQKSYFDVLGICCPSEV-
LVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALNQARLEASVRAYGSGS-E
EKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLRSFAAARRLTLD
VNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSLMSMTPQKAVLA
ETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFPVAKQPDSQVWA
GTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSKTQRLIDTCAKYYTPA-------
-------VVVMAAGVAVIPVAIRAHHLKHWFQLALVLLVSACPCALVLSTPVATFCALLT
AARTGLLIKGGDVLETLARIKIAAFDKTGTITRGEFCVEEFQAVGERIPMQQLLYWVSSI
ESRSSHPMASVLVDYALSKSVEPKSDNVTEFQIYPGEGIYGEIDGEGVYIGNKRILSRAS
CETV-PDM--KDMKGVTIGYVACKGQLIGVFTLSDSCRTGSAEAIRELRSLGIKSVMLTG
DSSAAASYAQNQLGNILDEVHPELLPEDKVRIVDELKAKHGPTLMIGDGMNDAPALAKAD
VGVSMGVSGSAVAMETSHITLMSNDIRRIPKAIQLARRTHRTIIVNIIFSVITKLAIVGL
ALSGHPLIWAAVLADVGTCMLVIMYSMLLLRSKGGRKAKK--------------------
CCASSQHGSH-----------AK-KHCVSRHCSDGPC---KSTGCSKESSAGKHGCHDHG
HA---HTHCKEPSSQHPTEKHACHDHG--------------HSHNHCKEPSSHVVTEKHV
CHD---HGNTHNHCKEAGNQLLLVEGHGCHDR----DHGHSH------EHTGKQDCHGHE
HSHCKEP----------KTPRADSEGACHGHGHDHGHEHRHCEG-----------DSHSH
ATGELGCHEHSTVEHACEHQCHAEQQTVHTAETHHCHDHEHGQHKHDHGEIEEPEKDCHD
HSHHCCHEPHDKDKTPAEPVEEVTISIAALPKDE------GHHHSEEHKGEHCGKA---K
-DCGVPAPTDCAASKNCCSV----------KGGDTCSSSQA-ACAKETSPCCRSYVKCPK

test/gblocks_masked.ali  view on Meta::CPAN

# built by masked_ali
#
>Vitis vinifera_29760@296090298
*************************************MATKKWQKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGE****VAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANS...
>Medicago truncatula_3880@357479567
*****************************XXXXXXXXXXXXXXXXXXXXVXGXCCXSEVXXXXXXLXXXXGXXXXXVXXXSRXXXVXHDXXXXXXXXXVXALNXXRLXAXXXXXGXXX*XXXXXXXXPSXXXXXXGXXLXXSXXXXXXXPXXXXAXXXXXXGXXPIXXXXXXXXXXXXXDXNXLXXIAVXXXXXXXDXXEAXXIVFLFXXXXWLEXXXXXXXXXXXXXXXXXXPXXAXXAXTGXXVXXXX...
>Arabidopsis thaliana_3702@7269912
*******************************MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGE****TSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDE...
>Glycine max_3847@356550732
***********************************MDKAEKAVQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNQARLEANIRVYGD****EKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVGAYPIILKAIVSIRNLRLDINILMLIAVIGTIVMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNITPQKAVIAETGEVVDADE...
>Oryza sativa_39947@315623028
***********************************MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQTRLEASVRAYGNGS*E*KITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARD...
>Sorghum bicolor_4558@242096926
*****************************MG***DAAVPAGTLQKSYFDVLGICCPSEVPLVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALNQARLEASVRAYGSGS*EEKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLRSFAAARRLTLDVNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSLMSMTPQKAVLAETGEVVSAQD...
>Brachypodium distachyon_15368@357123620
*****************************MGDDAAVPAAAAKLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVVHDAAAISQSQIVKALNQARLEASVRAYGGGGGAEKISNKFPSPYVLVCGALLVVSLFEHFWPPLKWFALAGAAAGLPPIVLRSVAAARRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASRKATAGMSSLMSMAPQNAVLAETGQVVATQD...
>Triticum aestivum_4565@302595059
******************************MADSTSPAAAARLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVLHDAAAISQAQIVRALNGARLEASVRAYGGAG*QSKVSNKWPSPYVLVCGVLLVVSLFEHFWRPLRWFAVAGAAAGLPPIVLRSVAALRRRTMDVNILMLIAVAGAIALKDYPEAGFIVFLFTIAEWLETRACGKATAGMSSLMSMAPQNAVLAETGQVVATQD...
>Hordeum vulgare_4513@295881652
*****************************XXXXXXXXXXXXXXXXXXXXVXGXCCXSEVXXXXXXLXXXXGXXXXXVXXXSRXXXVXHDXXXXXXXXXVXALNXXRLXAXXXXXGXXX*XXXXXXXXPSXXXXXXGXXLXXSXXXXXXXPXXXXAXXXXXXGXXPIXXXXXXXXXXXXXDXNXLXXIAVXXXXXXXDXXEAXXIVFLFXXXXWLEXXXXXXXXXXXXXXXXXXPXXAXXAXTGXXVXXXX...
>Selaginella moellendorffii_88036@302803464
MDIFSYQGPEGKGYEILAEEDDAVVAPRLAEDILNIPENFQQVARTVLNVMGICCPSEVPLVRKILEPLPGVKEVSVNYTSRIVTVLHDRLLTPEGRLVKALNEARLDASLHHRGE****LKRSSNWPSPWTICCGILLLVSFFKHFWNPLKWFAIGAVAVGIPPIFMRSIASLRRWILDINILMLIAVGGAIALTDYIEAGSIVFLFTLAEWLEGRSSEQARSALASGLD*VPRNAILAETGAMVPVDE...

test/neglist-out.ali  view on Meta::CPAN

MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPLIENILKSLDGVKEYTVIVPSRTVIVVHDSLLISPFQIAKALNQARLEANVKVNGETSFKNKWPSPFAVVSGIFLLLSFLKFVYPPLRWLAVVGVAAGIYPILAKAVASIRRLRVDINILIIITVAATLAMQDYMEAAAVVFLFTIADWLETRASYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Noccaea caerulescens_107243@40994784
MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPLIENILKSLDGVKEYTVIVPSRTVIVVHDSLLISPFQIAKALNQARLEANVKVNGETSFKNKWPSPFAVVSGIFLLLSFLKFVYPPLRWLAVVGVAAGIYPILAKAVASIRRLRVDINILVIITVAATLAMQDYMEAAAVVFLFTIADWLETRTSYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Arabidopsis thaliana_3702@7488065
MQDFMEAAAVVFLFTISDWLETRASYKATSVMQSLMSLAPQKAIIAETGEEVEVDEVKVDTVVAVKAGETIPIDGIVVDGNCEVDEKTLTGEAFPVPKQRDSTVWAGTINLNGYICVKTTSLAGDCVVAKMAKLVEEAQSSKTKSQRLIDKCSQYYTPAIILVSACVAIVPVIMKVHNLKHWFHLALVVLVSGCPCGLILSTPVATFCALTKAATSGLLIKSADYLDTLSKIKIVAFDKTGTITRGEFIV...
>Noccaea caerulescens_107243@46361991
MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPLIENILKSLDGVKEYTVIVPSRTVIVVHDSLLIPPFQIAKALNQARLEANVKVNGETSFKNKWPSPFAVVSGIFLLPSFLKFVYPPLRWLAVVGVAAGIYPILAKAVASIRRLRVDINILIIITVAATLAMQDYMEAAAVVFLFTTADWLETRASYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Noccaea caerulescens_107243@326416422
MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPVIENILKSLDGVKEYTVIVPSRTVIVVHDSLLISPFQIAKALNQARLEANVKVNGETSFKNKWDSPFAVVSGIFLLLSFLKFVYPPLRWLAVVGVAAGIYPILAKSVASIRRLRVDINILIIITVAATLAMQDYMEAAAVVFLFTIADWLETRASYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Arabidopsis thaliana_3702@15234620
MASKKMTKSYFDVLGICCTSEVPLIENILNSMDGVKEFSVIVPSRTVIVVHDTLILSQFQIVKALNQAQLEANVRVTGETNFKNKWPSPFAVVSGILLLLSFFKYLYSPFRWLAVAAVVAGIYPILAKAVASLARFRIDINILVVVTVGATIGMQDYTEAAVVVFLFTIAEWLQSRASYKASAVMQSLMSLAPQKAVIAETGEEVEVDELKTNTVIAVKAGETIPIDGVVVDGNCEVDEKTLTGEAFPVP...
>Arabidopsis thaliana_3702@20384833
MASKKMTKSYFDVLGICCTSEVPLIENILNSMDGVKEFSVIVPSRTVIVVHDTLILSQFQIVKALNQAQLEANVRVTGETNFKNKWPSPFAVVSGILLLLSFFKYLYSPFRWLAVAAVVAGIYPILAKAVASLARFRIDINILVVVTVGATIGMQDYTEAAVVVFLFTIAEWLQSRASYKASAVMQSLMSLAPQKAVIAETGEEVEVDELKTNTVIAVKAGETIPIDGVVVDGNCEVDEKTLTGEAFPVP...
>Arabidopsis lyrata_81972@297798966
MASKKMTKSYFDVLGICCTSEVPLIENILKSMDGVKEYSVIVPSRTVIVVHDTLILSQFQIVKALNQARLEANVRVTGETNFRNKWPSPFAMVSGLLLLLSFFKYLYSPFRWLAVAAVVAGIYPILAKAVASLARFRIDINILVIITVGATIGMRDYTEAGVVVFLFTIAEWLQSRASYKASAVMQSLMSLAPQKAMIAETGEEVQVDELKINTVIAVKAGETIPIDGVVVDGNCEVDEKTLTGEAFPVP...
>Arabidopsis halleri_81971@37665197
MAEGEEAKKKNLQTSYFDVVGICCTSEVSIVGDVLRPLDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAILSGVFLALSFFKYFYSLLEWLAVVAVVAGIFPILAKAVASVTRFRLDINALTFIAVIATLCMQNFTEAATIVFLFSVADWLESSAAHKASTVMSSLMSLAPRKAVIAETGHEVDVDEVRINTIVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Arabidopsis lyrata_81972@297798964
MAEGEEAKKKNLQTSYFDVVGICCSSEVSIVGDVLRPLDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGDTSLKSQWPSPFAIVSGVFLAVSFFKYFYNLLEWLAIAAVVAGIFPILAKAVASVTRFRLDINGLTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASTVMSSLMSLAPRKAVIADTGLEVDVDEVRINTIVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Arabidopsis thaliana_3702@334305691
MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Ricinus communis_3988@255582930
MAAQDKNKAAKKHQKSYFDVLGLCCSSEVPLIENILKSLDGVKEYSVIVPTRTVIVVHDNLLISQLQIVKALNQARLEANVRVKGDTSHQKKWPSPFAVASGVLLLLSLLKFVYHPLHWLALGAVAIGIFPILMKAVASLRNFRLDTNILVLIAVVGTIVLKEYVEAGFIVFLFTIAEWLESRAGHKANAVMSSLMSITPQKAIIAATGEEVDADEVKLNTVLAVKAGEVIPIDGIVVDGNCEVDEKTLT...
>Vitis vinifera_29760@359484975
MATKKWQKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGEVAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVA...
>Vitis vinifera_29760@296090298
MATKKWQKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGEVAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVA...
>Medicago truncatula_3880@357479567
MSSSEGGKKLQKSYFDVVGLCCSSEVPLIENILKPLQGVKEVSVIVPSRTVIVVHDTLLISQLQIVKALNQARLEANIRIYGNENHKKKWPSIYSVASGLLLLLSFLKFVYTPFKYVALAAVVAGIYPIFLKAIVSIRNLRIDINILVIIAVAGTIAMNDYLEAGTIVFLFSISDWLESSASHKSNAVMTSLMSIAPQKAVIAETGEDVDVDEVRVNTILAVKAGEIIPIDGIIVDGDCEVDEKTLTGES...
>Arabidopsis thaliana_3702@7269912
MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Glycine max_3847@356550732
MDKAEKAVQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNQARLEANIRVYGDEKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVGAYPIILKAIVSIRNLRLDINILMLIAVIGTIVMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNITPQKAVIAETGEVVDADEVKIDTVLAVKAGEVIPIDGVVLDGTCEVDEKTLTGESFP...
>Glycine max_3847@356564834
MRKSYFDVLGLCCSSEVPLIENILRPLQGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNEARLEANIRVYGDEKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVAVYPLILKAIVSIRNLRLDINILMLIAVIGTISMNHYLEAGTIVFLFSIAQWLESRASHKATAVMSSLMNIAPQKAVIAETGEVVDADEVKINTVLEVKAGEVIPIDGVVIDGICEVDEKKLTGESFPVAKQKDS...
>Arabidopsis thaliana_3702@110740419
GCSTVPEIEVDTKGGKTVGYVYVGERLAGFFNLSDACRSGVSQAMAELKSLGIKTAMLTGDNQAAAMHAQEQLGNVLDVVHGDLLPEDKSRIIQEFKKEGPTAMVGDGVNDAPALATADIGISMGISGSALATQTGNIILMSNDIRRIPQAVKLARRARRKVVENVCLSIILKAGILALAFAGHPLIWAAVLVDVGTCLLVIFNSMLLLREKKKIGNKKCYRASTSKLNGRKLEGDDDYVVDLEAGLLTK...
>Arabidopsis thaliana_3702@4938488
MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Oryza sativa_39947@125598398
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQARLEASVRAYGNGSEKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGES...
>Oryza sativa_39946@218198834
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQARLEASVRAYGNGSEKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGES...
>Oryza sativa_39947@315623028
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQTRLEASVRAYGNGSEKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGES...
>Sorghum bicolor_4558@242096926
MGDAAVPAGTLQKSYFDVLGICCPSEVPLVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALNQARLEASVRAYGSGSEEKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLRSFAAARRLTLDVNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSLMSMTPQKAVLAETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTL...
>Brachypodium distachyon_15368@357123620
MGDDAAVPAAAAKLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVVHDAAAISQSQIVKALNQARLEASVRAYGGGGGAEKISNKFPSPYVLVCGALLVVSLFEHFWPPLKWFALAGAAAGLPPIVLRSVAAARRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASRKATAGMSSLMSMAPQNAVLAETGQVVATQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVD...
>Triticum aestivum_4565@302595059
MADSTSPAAAARLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVLHDAAAISQAQIVRALNGARLEASVRAYGGAGQSKVSNKWPSPYVLVCGVLLVVSLFEHFWRPLRWFAVAGAAAGLPPIVLRSVAALRRRTMDVNILMLIAVAGAIALKDYPEAGFIVFLFTIAEWLETRACGKATAGMSSLMSMAPQNAVLAETGQVVATQDVKINTVIAVKAGEVVPIDGVVVDGRSEVDES...
>Triticum aestivum_4565@95114390
MGDSAAPAGKLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVLHDAAAISTAQIVRALNGARLEASVRAYGGAGQSKVSNKWPSPYVLVCGVLLVVSLFEHFWRPLKWFAVAGAAAGLPPIVLRSVAALRRRTMDVNILMLIAVAGAIALKDYSEAGFIVFLFTIAEWLETRACGKATAGMSSLMSMAPQNAVLAETGQVVATQDVKINTVIAVKAGEVVPIDGVVVDGRSEVDESTL...
>Glycine max_3847@356532650
MVENIKRSSFEVLGMCCATEEALVERILKPLRGVKDVSVIVPTRTVTVVHDVLLISESQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLLLALSFLKYAYQPLGWLALGSVVIGFPKVLLRAIASIKALTLNINILVLLAVCGTAALQDFWEAGIIIFLFSIAQWLETRATHKAMVAMSSLTSMAPQKAVIAETGELVDVNDVKINTILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESLPVTK...
>Glycine max_3847@356468504
MVENIKRSSFEVLGMCCATEEALVERILKPLRGVKDVSVIVPTRTVTVVHDVLLISESQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLLLALSFLKYAYQPLGWLALGSVVIGFPKVLLRAIASIKALTLNINILVLLAVCGTAALQDFWEAGIIIFLFSIAQWLETRATHKAMVAMSSLTSMAPQKAVIAETGELVDVNDVKINTILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESLPVTK...

test/neglist-out.ali  view on Meta::CPAN

MRDDDRGGLLVPPDSTPSSGGYVDSNTPRKRKRITTYPRDDPGWLAPFNALVFKYPTAMFLLAMFLLAAAPALMDHGAVDVTRAKLGSTDGGVGAGRYMPLVREKEARAGADETTTTTAAEAEAARPRPLVFAAADDDRGGDLSEKSSLLGEKNKRSSSDDFASHLEAIHVAVRDEHAGGDEPSSHARLKVLGICCPSEVPLIHGILDKRPGVRAVKVIVPTKTVLVEHAPSVASAASIVDALNRARLQA...
>Phaeodactylum tricornutum_556484@219114054
MDSPSRRPSLKKSSSSSKSLKPELARSVLVCNGICCAAEIPIINRILEPIKGVKKVRVNVPLKQILVDYDATQVSAKAMTKALNVENLAATIKRDGDDEQMVSEPNTYPKPAVVLSGVCWLVSMLSLAEGNLTNLKWVGLASVAFGLPAIAIKAIRTMARYQFDTNCLMLFAACGAVALQEYTEAAAVVFLFAISEWLEVRATARARHALSAIVHLRPEKANLVHPQTRQLVVIPASAVPVGALVSVKTG...
>Phaeodactylum tricornutum_556484@219114062
MDSPSRRPSLKKSSSSSKSLKPELARSVLVCNGICCAAEIPIINRILEPIKGVKKVRVNVPLKQILVDYDATQVSAKAMTKALNVENLAATIKRDGDDEQMVSEPNTYPKPAVVLSGVCWLVSMLSLAEGNLTNLKWVGLASVAFGLPAIAIKAIRTMARYQFDTNCLMLFAACGAVALQEYTEAAALVFLFAISEWLEVRATARARHALSAIVHLRPEKANLVHPQTRQLVVIPASAVPVGALVSVKTG...
>Mariprofundus ferrooxydans_314345@114776637
MDCPDCAARIEKAVVRLPGVANVRVNFIGETLSAEVNSEESMQRMRKAICSLGYSVEEDGEKRVTSVLQVKGMDCSEEKVLVEKVLTGIPGLERFDVNLMSQRLRVIHDPNILPLSGIIRVLENAGLSAAPFGAAQPTEGRWSRYGREISTGTAGILTGVGLLLHFMDAGNVWEITAYSLAIASGGWFIARKGLAAARHRSLDMNFLMMVAVIGAMGIGAWDEGAMVVFLFALAQMLEGRAMDRARSAVR...
>Thalassiosira pseudonana_296543@223998022
VSGICCSSEIPAIRSILKPLPGVRKVGINVATKVVYVDHDPGVISAGLLMRALNEERFGAEVLTDGGVELMHDHRWFHGLKFNVAISGIFWMMSMLSLIGGNWEYLKYAGIGSVLFGMPPVLMKGWMTIRRYQFDANCMMIIAAFGALALGEFDEAASVAFLFSVSEWLEARATEKARRALGEIVSLRPEYANLVDKKAGGIVIVPASKVPVGSLVSVRTGDKVPADGLVVEGTSSVDESSLTGEARPVE...
>Ostreococcus tauri_70448@308800134
MSPTGDENRSDDDTCLWCDARTPCVEQGLCLDPTVIDFTCVEFVDGFETRAGGPLDAFRSAVETLNDEQNILQLHPTEAYLIEGALVARDPVTRRWRPARAVGRDADADEKSSRHSDDSAENGRLRMLELFASIGCPPEAKEARERLIGRKCETVPHGDHVDFLVGERLVHFADAEHCGDGCSGKGMVHVEDHGSVRVLRRRRGGGKGGDYKPFLSTSAESRGAVESMGETAATIAAKLALEARGGNEPS...
>Methanothermobacter marburgensis_79929@304314567
MGCECSSCSPEEGDKDIRIIAASGALLISGIILSFAGGLISVPFLLASVAAAGYRIFPPAIRSVLRGRFTVNFLILIAAAGAILLGDYTEAALVTVLYNIAEYLEEYAHRRSHRSVESLIKLRPRTARVLGDGENIIKVEEVRSGSIIGIKPGETIPLDGTVTRGRSKVDQSNITGESLPITVQEGSDVFAGTRNLDGYLEVRVTREADNTVLAGVIETVKRAATRRSRRERFIERFASVYTPAVIALAV...
>Klebsiella oxytoca_883120@376378468
MSGSVKNSKTQVREESAGCCEKINLIVGSKMQRSEEPAKAHGHAHDHKDCSAELSHKEHGHGSDKHLHREQGHVKGGHAHEGCSHEHSHTDEEHDHGEEEHSHGDHQHKGCNHDHAQDDQADEHHGHSGDCCSGAPTNLSNLGGSKVVAGGLRTEIRIMQMDCPVEENLIKKKLGAMTSVKELDFNLMQRVLTVTHTPDSLEPILVAIRSLGFVPEVSDNNGEKKNIQEKKKPWWPLALAGVAALAAEVM...
>Staphylococcus aureus_282458@49482927
MDSSAKTLTEDKQVYRVEGFSCANCAGKFEKNVKQLAGVQDAKVNFGASKIDVYGNASVQELEKAGAFENLKVFPEKLANSSMQAVKEDTKAPKEEKIPFYKKHSTLLFATLLIAFGYLSHFVNGEDNLVTSMLFVGSIVIGGYSLFKVGFQNLIRFDFDMKTLMTVAVIGAAIIGEWAEASIVVVLFAISEALERFSMDRARQSIRSLMDIAPKEALVMRNGQEIMIHVDDIAVGDIMIVKPGEKIAMD...
>Staphylococcus aureus_931456@377761869
MEGFSCANCAGKFEKNVKQLAGVQDAKVNFGASKIDVYGNASVQELEKAGAFENLKVFPEKLANSSMQAVKEDTKAPKEEKIPFYKKHSTLLFATLLIAFGYLSHFVNGEDNLVTSMLFVGSIVIGGYSLFKVGFQNLIRFDFDMKTLMTVAVIGAAIIGEWAEASIVVVLFAISEALERFSMDRARQSIRSLMDIAPKEALVMRNGQEIMIHVDDIAVGDIMIVKPGEKIAMDGIIINGVSAVNQAAIT...
>Staphylococcus aureus_931452@377751042
MDSSAKTLTEDKQVYRVEGFSCANCAGKFKKNVKQLAGVQDAKVNFGASKIDVYGNASVQELEKAGAFENLKVFPEKLANSSMQAVKEDTKAPKEEKIPFYKKHSTLLFATLLIAFGYLSHFVNGEDNLVTSMLFVGSIVIGGYSLFKVGFQNLIRFDFDMKTLMTVAVIGAAIIGEWAEASIVVVLFAISEALERFSMDRARQSIRSLMDIAPKEALVMRNGQEIMIHVDDIAVGDIMIVKPGEKIAMD...

test/neglist.ali  view on Meta::CPAN

MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPLIENILKSLDGVKEYTVIVPSRTVIVVHDSLLISPFQIAKALNQARLEANVKVNGETSFKNKWPSPFAVVSGIFLLLSFLKFVYPPLRWLAVVGVAAGIYPILAKAVASIRRLRVDINILIIITVAATLAMQDYMEAAAVVFLFTIADWLETRASYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Noccaea caerulescens_107243@40994784
MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPLIENILKSLDGVKEYTVIVPSRTVIVVHDSLLISPFQIAKALNQARLEANVKVNGETSFKNKWPSPFAVVSGIFLLLSFLKFVYPPLRWLAVVGVAAGIYPILAKAVASIRRLRVDINILVIITVAATLAMQDYMEAAAVVFLFTIADWLETRTSYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Arabidopsis thaliana_3702@7488065
MQDFMEAAAVVFLFTISDWLETRASYKATSVMQSLMSLAPQKAIIAETGEEVEVDEVKVDTVVAVKAGETIPIDGIVVDGNCEVDEKTLTGEAFPVPKQRDSTVWAGTINLNGYICVKTTSLAGDCVVAKMAKLVEEAQSSKTKSQRLIDKCSQYYTPAIILVSACVAIVPVIMKVHNLKHWFHLALVVLVSGCPCGLILSTPVATFCALTKAATSGLLIKSADYLDTLSKIKIVAFDKTGTITRGEFIV...
>Noccaea caerulescens_107243@46361991
MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPLIENILKSLDGVKEYTVIVPSRTVIVVHDSLLIPPFQIAKALNQARLEANVKVNGETSFKNKWPSPFAVVSGIFLLPSFLKFVYPPLRWLAVVGVAAGIYPILAKAVASIRRLRVDINILIIITVAATLAMQDYMEAAAVVFLFTTADWLETRASYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Noccaea caerulescens_107243@326416422
MALQKEIKNKEEDKKTKKKWQKSYFDVLGICCTSEIPVIENILKSLDGVKEYTVIVPSRTVIVVHDSLLISPFQIAKALNQARLEANVKVNGETSFKNKWDSPFAVVSGIFLLLSFLKFVYPPLRWLAVVGVAAGIYPILAKSVASIRRLRVDINILIIITVAATLAMQDYMEAAAVVFLFTIADWLETRASYKANSVMQSLMSLAPQKAVIAETGEEVEVDEVQLNTIIAVKAGETIPIDGIVVDGNCE...
>Arabidopsis thaliana_3702@15234620
MASKKMTKSYFDVLGICCTSEVPLIENILNSMDGVKEFSVIVPSRTVIVVHDTLILSQFQIVKALNQAQLEANVRVTGETNFKNKWPSPFAVVSGILLLLSFFKYLYSPFRWLAVAAVVAGIYPILAKAVASLARFRIDINILVVVTVGATIGMQDYTEAAVVVFLFTIAEWLQSRASYKASAVMQSLMSLAPQKAVIAETGEEVEVDELKTNTVIAVKAGETIPIDGVVVDGNCEVDEKTLTGEAFPVP...
>Arabidopsis thaliana_3702@20384833
MASKKMTKSYFDVLGICCTSEVPLIENILNSMDGVKEFSVIVPSRTVIVVHDTLILSQFQIVKALNQAQLEANVRVTGETNFKNKWPSPFAVVSGILLLLSFFKYLYSPFRWLAVAAVVAGIYPILAKAVASLARFRIDINILVVVTVGATIGMQDYTEAAVVVFLFTIAEWLQSRASYKASAVMQSLMSLAPQKAVIAETGEEVEVDELKTNTVIAVKAGETIPIDGVVVDGNCEVDEKTLTGEAFPVP...
>Arabidopsis lyrata_81972@297798966
MASKKMTKSYFDVLGICCTSEVPLIENILKSMDGVKEYSVIVPSRTVIVVHDTLILSQFQIVKALNQARLEANVRVTGETNFRNKWPSPFAMVSGLLLLLSFFKYLYSPFRWLAVAAVVAGIYPILAKAVASLARFRIDINILVIITVGATIGMRDYTEAGVVVFLFTIAEWLQSRASYKASAVMQSLMSLAPQKAMIAETGEEVQVDELKINTVIAVKAGETIPIDGVVVDGNCEVDEKTLTGEAFPVP...
>Arabidopsis halleri_81971@37665197
MAEGEEAKKKNLQTSYFDVVGICCTSEVSIVGDVLRPLDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAILSGVFLALSFFKYFYSLLEWLAVVAVVAGIFPILAKAVASVTRFRLDINALTFIAVIATLCMQNFTEAATIVFLFSVADWLESSAAHKASTVMSSLMSLAPRKAVIAETGHEVDVDEVRINTIVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Arabidopsis lyrata_81972@297798964
MAEGEEAKKKNLQTSYFDVVGICCSSEVSIVGDVLRPLDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGDTSLKSQWPSPFAIVSGVFLAVSFFKYFYNLLEWLAIAAVVAGIFPILAKAVASVTRFRLDINGLTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASTVMSSLMSLAPRKAVIADTGLEVDVDEVRINTIVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Arabidopsis thaliana_3702@334305691
MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Ricinus communis_3988@255582930
MAAQDKNKAAKKHQKSYFDVLGLCCSSEVPLIENILKSLDGVKEYSVIVPTRTVIVVHDNLLISQLQIVKALNQARLEANVRVKGDTSHQKKWPSPFAVASGVLLLLSLLKFVYHPLHWLALGAVAIGIFPILMKAVASLRNFRLDTNILVLIAVVGTIVLKEYVEAGFIVFLFTIAEWLESRAGHKANAVMSSLMSITPQKAIIAATGEEVDADEVKLNTVLAVKAGEVIPIDGIVVDGNCEVDEKTLT...
>Vitis vinifera_29760@359484975
MATKKWQKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGEVAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVA...
>Vitis vinifera_29760@296090298
MATKKWQKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGEVAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVA...
>Medicago truncatula_3880@357479567
MSSSEGGKKLQKSYFDVVGLCCSSEVPLIENILKPLQGVKEVSVIVPSRTVIVVHDTLLISQLQIVKALNQARLEANIRIYGNENHKKKWPSIYSVASGLLLLLSFLKFVYTPFKYVALAAVVAGIYPIFLKAIVSIRNLRIDINILVIIAVAGTIAMNDYLEAGTIVFLFSISDWLESSASHKSNAVMTSLMSIAPQKAVIAETGEDVDVDEVRVNTILAVKAGEIIPIDGIIVDGDCEVDEKTLTGES...
>Arabidopsis thaliana_3702@7269912
MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Glycine max_3847@356550732
MDKAEKAVQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNQARLEANIRVYGDEKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVGAYPIILKAIVSIRNLRLDINILMLIAVIGTIVMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNITPQKAVIAETGEVVDADEVKIDTVLAVKAGEVIPIDGVVLDGTCEVDEKTLTGESFP...
>Glycine max_3847@356564834
MRKSYFDVLGLCCSSEVPLIENILRPLQGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNEARLEANIRVYGDEKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVAVYPLILKAIVSIRNLRLDINILMLIAVIGTISMNHYLEAGTIVFLFSIAQWLESRASHKATAVMSSLMNIAPQKAVIAETGEVVDADEVKINTVLEVKAGEVIPIDGVVIDGICEVDEKKLTGESFPVAKQKDS...
>Arabidopsis thaliana_3702@110740419
GCSTVPEIEVDTKGGKTVGYVYVGERLAGFFNLSDACRSGVSQAMAELKSLGIKTAMLTGDNQAAAMHAQEQLGNVLDVVHGDLLPEDKSRIIQEFKKEGPTAMVGDGVNDAPALATADIGISMGISGSALATQTGNIILMSNDIRRIPQAVKLARRARRKVVENVCLSIILKAGILALAFAGHPLIWAAVLVDVGTCLLVIFNSMLLLREKKKIGNKKCYRASTSKLNGRKLEGDDDYVVDLEAGLLTK...
>Arabidopsis thaliana_3702@4938488
MAEGEESKKMNLQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGETSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDGVVVDGSCDVDEKTLTG...
>Oryza sativa_39947@125598398
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQARLEASVRAYGNGSEKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGES...
>Oryza sativa_39946@218198834
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQARLEASVRAYGNGSEKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGES...
>Oryza sativa_39947@315623028
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQTRLEASVRAYGNGSEKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGES...
>Sorghum bicolor_4558@242096926
MGDAAVPAGTLQKSYFDVLGICCPSEVPLVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALNQARLEASVRAYGSGSEEKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLRSFAAARRLTLDVNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSLMSMTPQKAVLAETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTL...
>Brachypodium distachyon_15368@357123620
MGDDAAVPAAAAKLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVVHDAAAISQSQIVKALNQARLEASVRAYGGGGGAEKISNKFPSPYVLVCGALLVVSLFEHFWPPLKWFALAGAAAGLPPIVLRSVAAARRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASRKATAGMSSLMSMAPQNAVLAETGQVVATQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVD...
>Triticum aestivum_4565@302595059
MADSTSPAAAARLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVLHDAAAISQAQIVRALNGARLEASVRAYGGAGQSKVSNKWPSPYVLVCGVLLVVSLFEHFWRPLRWFAVAGAAAGLPPIVLRSVAALRRRTMDVNILMLIAVAGAIALKDYPEAGFIVFLFTIAEWLETRACGKATAGMSSLMSMAPQNAVLAETGQVVATQDVKINTVIAVKAGEVVPIDGVVVDGRSEVDES...
>Triticum aestivum_4565@95114390
MGDSAAPAGKLEKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVLHDAAAISTAQIVRALNGARLEASVRAYGGAGQSKVSNKWPSPYVLVCGVLLVVSLFEHFWRPLKWFAVAGAAAGLPPIVLRSVAALRRRTMDVNILMLIAVAGAIALKDYSEAGFIVFLFTIAEWLETRACGKATAGMSSLMSMAPQNAVLAETGQVVATQDVKINTVIAVKAGEVVPIDGVVVDGRSEVDESTL...
>Glycine max_3847@356532650
MVENIKRSSFEVLGMCCATEEALVERILKPLRGVKDVSVIVPTRTVTVVHDVLLISESQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLLLALSFLKYAYQPLGWLALGSVVIGFPKVLLRAIASIKALTLNINILVLLAVCGTAALQDFWEAGIIIFLFSIAQWLETRATHKAMVAMSSLTSMAPQKAVIAETGELVDVNDVKINTILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESLPVTK...
>Glycine max_3847@356468504
MVENIKRSSFEVLGMCCATEEALVERILKPLRGVKDVSVIVPTRTVTVVHDVLLISESQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLLLALSFLKYAYQPLGWLALGSVVIGFPKVLLRAIASIKALTLNINILVLLAVCGTAALQDFWEAGIIIFLFSIAQWLETRATHKAMVAMSSLTSMAPQKAVIAETGELVDVNDVKINTILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESLPVTK...

test/neglist.ali  view on Meta::CPAN

MRDDDRGGLLVPPDSTPSSGGYVDSNTPRKRKRITTYPRDDPGWLAPFNALVFKYPTAMFLLAMFLLAAAPALMDHGAVDVTRAKLGSTDGGVGAGRYMPLVREKEARAGADETTTTTAAEAEAARPRPLVFAAADDDRGGDLSEKSSLLGEKNKRSSSDDFASHLEAIHVAVRDEHAGGDEPSSHARLKVLGICCPSEVPLIHGILDKRPGVRAVKVIVPTKTVLVEHAPSVASAASIVDALNRARLQA...
>Phaeodactylum tricornutum_556484@219114054
MDSPSRRPSLKKSSSSSKSLKPELARSVLVCNGICCAAEIPIINRILEPIKGVKKVRVNVPLKQILVDYDATQVSAKAMTKALNVENLAATIKRDGDDEQMVSEPNTYPKPAVVLSGVCWLVSMLSLAEGNLTNLKWVGLASVAFGLPAIAIKAIRTMARYQFDTNCLMLFAACGAVALQEYTEAAAVVFLFAISEWLEVRATARARHALSAIVHLRPEKANLVHPQTRQLVVIPASAVPVGALVSVKTG...
>Phaeodactylum tricornutum_556484@219114062
MDSPSRRPSLKKSSSSSKSLKPELARSVLVCNGICCAAEIPIINRILEPIKGVKKVRVNVPLKQILVDYDATQVSAKAMTKALNVENLAATIKRDGDDEQMVSEPNTYPKPAVVLSGVCWLVSMLSLAEGNLTNLKWVGLASVAFGLPAIAIKAIRTMARYQFDTNCLMLFAACGAVALQEYTEAAALVFLFAISEWLEVRATARARHALSAIVHLRPEKANLVHPQTRQLVVIPASAVPVGALVSVKTG...
>Mariprofundus ferrooxydans_314345@114776637
MDCPDCAARIEKAVVRLPGVANVRVNFIGETLSAEVNSEESMQRMRKAICSLGYSVEEDGEKRVTSVLQVKGMDCSEEKVLVEKVLTGIPGLERFDVNLMSQRLRVIHDPNILPLSGIIRVLENAGLSAAPFGAAQPTEGRWSRYGREISTGTAGILTGVGLLLHFMDAGNVWEITAYSLAIASGGWFIARKGLAAARHRSLDMNFLMMVAVIGAMGIGAWDEGAMVVFLFALAQMLEGRAMDRARSAVR...
>Thalassiosira pseudonana_296543@223998022
VSGICCSSEIPAIRSILKPLPGVRKVGINVATKVVYVDHDPGVISAGLLMRALNEERFGAEVLTDGGVELMHDHRWFHGLKFNVAISGIFWMMSMLSLIGGNWEYLKYAGIGSVLFGMPPVLMKGWMTIRRYQFDANCMMIIAAFGALALGEFDEAASVAFLFSVSEWLEARATEKARRALGEIVSLRPEYANLVDKKAGGIVIVPASKVPVGSLVSVRTGDKVPADGLVVEGTSSVDESSLTGEARPVE...
>Ostreococcus tauri_70448@308800134
MSPTGDENRSDDDTCLWCDARTPCVEQGLCLDPTVIDFTCVEFVDGFETRAGGPLDAFRSAVETLNDEQNILQLHPTEAYLIEGALVARDPVTRRWRPARAVGRDADADEKSSRHSDDSAENGRLRMLELFASIGCPPEAKEARERLIGRKCETVPHGDHVDFLVGERLVHFADAEHCGDGCSGKGMVHVEDHGSVRVLRRRRGGGKGGDYKPFLSTSAESRGAVESMGETAATIAAKLALEARGGNEPS...
>Desulfotomaculum gibsoniae_767817@357041591
MTQCSGHNCSCVKNNIMEELTSEGLQQPMKVTKPEEKAINNSAPHLNGMQKSVFVLHGLDCADCAAKLEKRIAGLSGVEEATINFGASKMSVRHTTGVPQILRAIKEAGYAAESDHAAATQTNQPLWHDPKLILTVISGLFLAGGMTASLFNLGDRLVIDLLLAAMLSGGYFVVKNDLYSIKALSLDMNVLMSVAAIGAVAIGEWFEGATVVFLFSLGNTLQAYSMAKTRSSIRALMELSPREALVRRDG...
>Methanothermobacter marburgensis_79929@304314567
MGCECSSCSPEEGDKDIRIIAASGALLISGIILSFAGGLISVPFLLASVAAAGYRIFPPAIRSVLRGRFTVNFLILIAAAGAILLGDYTEAALVTVLYNIAEYLEEYAHRRSHRSVESLIKLRPRTARVLGDGENIIKVEEVRSGSIIGIKPGETIPLDGTVTRGRSKVDQSNITGESLPITVQEGSDVFAGTRNLDGYLEVRVTREADNTVLAGVIETVKRAATRRSRRERFIERFASVYTPAVIALAV...
>Klebsiella oxytoca_883120@376378468
MSGSVKNSKTQVREESAGCCEKINLIVGSKMQRSEEPAKAHGHAHDHKDCSAELSHKEHGHGSDKHLHREQGHVKGGHAHEGCSHEHSHTDEEHDHGEEEHSHGDHQHKGCNHDHAQDDQADEHHGHSGDCCSGAPTNLSNLGGSKVVAGGLRTEIRIMQMDCPVEENLIKKKLGAMTSVKELDFNLMQRVLTVTHTPDSLEPILVAIRSLGFVPEVSDNNGEKKNIQEKKKPWWPLALAGVAALAAEVM...
>Staphylococcus aureus_282458@49482927
MDSSAKTLTEDKQVYRVEGFSCANCAGKFEKNVKQLAGVQDAKVNFGASKIDVYGNASVQELEKAGAFENLKVFPEKLANSSMQAVKEDTKAPKEEKIPFYKKHSTLLFATLLIAFGYLSHFVNGEDNLVTSMLFVGSIVIGGYSLFKVGFQNLIRFDFDMKTLMTVAVIGAAIIGEWAEASIVVVLFAISEALERFSMDRARQSIRSLMDIAPKEALVMRNGQEIMIHVDDIAVGDIMIVKPGEKIAMD...
>Staphylococcus aureus_931456@377761869
MEGFSCANCAGKFEKNVKQLAGVQDAKVNFGASKIDVYGNASVQELEKAGAFENLKVFPEKLANSSMQAVKEDTKAPKEEKIPFYKKHSTLLFATLLIAFGYLSHFVNGEDNLVTSMLFVGSIVIGGYSLFKVGFQNLIRFDFDMKTLMTVAVIGAAIIGEWAEASIVVVLFAISEALERFSMDRARQSIRSLMDIAPKEALVMRNGQEIMIHVDDIAVGDIMIVKPGEKIAMDGIIINGVSAVNQAAIT...

test/phylip-lr.phy  view on Meta::CPAN

SGLLIKGGHA LETLAKIKVM AFDKTGTITK GEFAVTNFQS LSDDIDLNTL IYWVSCIESK
SGFLIKTGDC LETLAKIKIV AFDKTGTITK AEFMVSDFRS LSPSINLHKL LYWVSSIECK
SGLLIKGGDH LETLAKIKVM AFDKTGTITK GEFVVTHFQS LSDDIDLNTL AYWVSSIESK
TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFQP VGERVSLQQL LYWVSSVESR
TGLLIKGGDV LETLARIKIA AFDKTGTITR GEFCVEEFQA VGERIPMQQL LYWVSSIESR
TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFRT AGERVPKQKL LYWVSSIESR
TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFQT VGERVSKQQL IYWVSSIESR
TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFQT VGERVSKQQL LYWVSSIESR
LGVVIKGGSY LEILAKIKCL AMDKTGTLTE GHFRVSEVVP VGETEDLQQI LYWLTSVESR

SSHPMAAALF DYGLSQSVEP KPENVEEFQN FPGEGIHGKI DGKDIYVGNR KIALRAGCET
SSHPLAEAIV DHGRSLSIVP NPEKVTEFEN FPGEGICGKI DERVLYIGNK KIATRAGSET
SSHPMAAALI DYARSVSVEP KPDIVENFQN FPGEGVYGRI DGQDIYIGNK RIAQRAGCLT
SSHPLAAAIV DYGRSLSVEP EPEKVTEFEN FPGEGICGKI EGRVIYIGNK KIATRAGSET
SSHPMASVLV DYAQSKSVEP KSENVSEFQI YPGEGIYGEI DGAGIYIGNK RILSRASCET
SSHPMASVLV DYALSKSVEP KSDNVTEFQI YPGEGIYGEI DGEGVYIGNK RILSRASCET
SSHPMASALV DHAQSNSVEP KSENVTEFQI YPGEGIYGEI DGKGVYVGNK RILSRASCQT
SSHPMASALV GYAQSNSVEP KSENVAEFQI YPGEGIYGEI DGEGVYVGNK RILARASCQT
SSHPMAAALV GYAQSNSVEP KSENVAEFQM YPGEGIYGEI GGEGVYVGNK RILARASCQI
SSHPMAAALV TYASLQDVVP S-KSVTDFQI IEGEGVSAVV DGHLVEIGNA RLASRLGWSS

-GKTIGYVYS DATPTGIFTL SDACRTGVVE AIKELKLLGI KSAMLTGDSH ASAMHTQDQL
VGKTIGYIYS GPTPVGIFSL SDTCRSGVQE AIRKLKLLGI KTAMLTGDCQ SAAMQAQEQL
---------- ---------- ---------- --------GI QTAMLTGDNQ DAAMSTQEQL
-GKTTGYIYL GATPLGFFSL SDTCRLGVQE AIGQLKSLGI KTAMLTGDSQ SAAMQAQEQL
VGVTIGYVAC NNELIGVFTL SDACRTGSAE AIKELRSLGI KSVMLTGDSS AAATYAQNQL

test/phylip-rep.phy  view on Meta::CPAN

Medicago   SGLLIKGGHA LETLAKIKVM AFDKTGTITK GEFAVTNFQS LSDDIDLNTL IYWVSCIESK
Arabidopsi SGFLIKTGDC LETLAKIKIV AFDKTGTITK AEFMVSDFRS LSPSINLHKL LYWVSSIECK
Glycine    SGLLIKGGDH LETLAKIKVM AFDKTGTITK GEFVVTHFQS LSDDIDLNTL AYWVSSIESK
Oryza      TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFQP VGERVSLQQL LYWVSSVESR
Sorghum    TGLLIKGGDV LETLARIKIA AFDKTGTITR GEFCVEEFQA VGERIPMQQL LYWVSSIESR
Brachypodi TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFRT AGERVPKQKL LYWVSSIESR
Triticum   TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFQT VGERVSKQQL IYWVSSIESR
Hordeum    TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFQT VGERVSKQQL LYWVSSIESR
Selaginell LGVVIKGGSY LEILAKIKCL AMDKTGTLTE GHFRVSEVVP VGETEDLQQI LYWLTSVESR

Vitis      SSHPMAAALF DYGLSQSVEP KPENVEEFQN FPGEGIHGKI DGKDIYVGNR KIALRAGCET
Medicago   SSHPLAEAIV DHGRSLSIVP NPEKVTEFEN FPGEGICGKI DERVLYIGNK KIATRAGSET
Arabidopsi SSHPMAAALI DYARSVSVEP KPDIVENFQN FPGEGVYGRI DGQDIYIGNK RIAQRAGCLT
Glycine    SSHPLAAAIV DYGRSLSVEP EPEKVTEFEN FPGEGICGKI EGRVIYIGNK KIATRAGSET
Oryza      SSHPMASVLV DYAQSKSVEP KSENVSEFQI YPGEGIYGEI DGAGIYIGNK RILSRASCET
Sorghum    SSHPMASVLV DYALSKSVEP KSDNVTEFQI YPGEGIYGEI DGEGVYIGNK RILSRASCET
Brachypodi SSHPMASALV DHAQSNSVEP KSENVTEFQI YPGEGIYGEI DGKGVYVGNK RILSRASCQT
Triticum   SSHPMASALV GYAQSNSVEP KSENVAEFQI YPGEGIYGEI DGEGVYVGNK RILARASCQT
Hordeum    SSHPMAAALV GYAQSNSVEP KSENVAEFQM YPGEGIYGEI GGEGVYVGNK RILARASCQI
Selaginell SSHPMAAALV TYASLQDVVP S-KSVTDFQI IEGEGVSAVV DGHLVEIGNA RLASRLGWSS

Vitis      -GKTIGYVYS DATPTGIFTL SDACRTGVVE AIKELKLLGI KSAMLTGDSH ASAMHTQDQL
Medicago   VGKTIGYIYS GPTPVGIFSL SDTCRSGVQE AIRKLKLLGI KTAMLTGDCQ SAAMQAQEQL
Arabidopsi ---------- ---------- ---------- --------GI QTAMLTGDNQ DAAMSTQEQL
Glycine    -GKTTGYIYL GATPLGFFSL SDTCRLGVQE AIGQLKSLGI KTAMLTGDSQ SAAMQAQEQL
Oryza      VGVTIGYVAC NNELIGVFTL SDACRTGSAE AIKELRSLGI KSVMLTGDSS AAATYAQNQL

test/phylip.ali  view on Meta::CPAN

>Vitis
QKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALN
QARLEANVRIYGAYQKKWPSPFAIVSGI????SFLKYVYQPFRWLALGAVAAGIFPIAWR
GIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSL
MSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFP
VAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKSKTQRFIDKCTKF
YTPVVVLISAGLAGIPAALRVHDLSHWFHLSLVVLVSACPCALILSTPVATFCALSKAAV
SGLLIKGGEYLEILAKIRIMAFDKTGTITRGEFVVKDFQSLRDDVSSDTLLYWVSSIESK
SSHPMAAALFDYGLSQSVEPKPENVEEFQNFPGEGIHGKIDGKDIYVGNRKIALRAGCET
-GKTIGYVYSDATPTGIFTLSDACRTGVVEAIKELKLLGIKSAMLTGDSHASAMHTQDQL
GHTLEVVHAELLPEDKARIIKDFK-EEGPTAMIGDGVNDAPALATADIGISMGIAGSALA
TETGHVVLMTNDIRKIPKAVRLARKTHRKVVENVILSITTKAAILALAIAGHPLIWAAVL
ADVATHLIIISIVVPTAFLK-----------------------------
>Medicago
QKSYFDVVGLCCSSEVPLIENILKPLQGVKEVSVIVPSRTVIVVHDTLLISQLQIVKALN
QARLEANIRIYGNHKKKWPSIYSVASGLLLLLSFLKFVYTPFKYVALAAVVAGIYPIFLK
AIVSIRNLRIDINILVIIAVAGTIAMNDYLEAGTIVFLFSISDWLESSASHKSNAVMTSL
MSIAPQKAVIAETGEDVDVDEVRVNTILAVKAGEIIPIDGIIVDGDCEVDEKTLTGESFP
VAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMTKLVEDAQNSKTSTQRLIDKFAKF

test/phylip.ali  view on Meta::CPAN

SETGNIILMSNDIRKIPEAIKLARKARRKVLENIVLSIMTKAAILGLAIGGHPLVWAAVV
ADVGTCLLVIFNSML--LLRHQHQHEQHNHDQHDQHEHHNHHCHLIHGC
>Oryza
QKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALN
QTRLEASVRAYGKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLR
SIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSAL
MSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGESFP
VSKQPDSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSSTQRLIDTCAKY
YTPAVVVMAGSVAAIPAIAKAHNLKHWFQLALVLLVSACPCALVLSTPIATFCALLRAAR
TGLLIKGGDVLESLASIKVAAFDKTGTITRGEFSVEEFQPVGERVSLQQLLYWVSSVESR
SSHPMASVLVDYAQSKSVEPKSENVSEFQIYPGEGIYGEIDGAGIYIGNKRILSRASCET
VGVTIGYVACNNELIGVFTLSDACRTGSAEAIKELRSLGIKSVMLTGDSSAAATYAQNQL
GNILAEVHAELLPEDKVRIVGELKEKDGPTLMVGDGMNDAPALAKADVGVSMGVSGSAVA
METSHVALMSNDIRRIPKAVRLARRTHRTIIVNIIFSVITKLAIVGLAFAGHPLIWAAVL
ADVGTCLLVIMYSMLLLREKHNHHEEPAHKHSSNQHGCHDHHTADLHPC
>Sorghum
QKSYFDVLGICCPSEVPLVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALN
QARLEASVRAYGKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLR
SFAAARRLTLDVNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSL
MSMTPQKAVLAETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFP
VAKQPDSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSKTQRLIDTCAKY
YTPAVVVMAAGVAVIPVAIRAHHLKHWFQLALVLLVSACPCALVLSTPVATFCALLTAAR
TGLLIKGGDVLETLARIKIAAFDKTGTITRGEFCVEEFQAVGERIPMQQLLYWVSSIESR
SSHPMASVLVDYALSKSVEPKSDNVTEFQIYPGEGIYGEIDGEGVYIGNKRILSRASCET
VGVTIGYVACKGQLIGVFTLSDSCRTGSAEAIRELRSLGIKSVMLTGDSSAAASYAQNQL
GNILDEVHPELLPEDKVRIVDELKAKHGPTLMIGDGMNDAPALAKADVGVSMGVSGSAVA
METSHITLMSNDIRRIPKAIQLARRTHRTIIVNIIFSVITKLAIVGLALSGHPLIWAAVL
ADVGTCMLVIMYSMLLLRSKHTHCKEPSSQHPTEKHACHDHHTAETHHC
>Brachypodium
EKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVVHDAAAISQSQIVKALN
QARLEASVRAYGKISNKFPSPYVLVCGALLVVSLFEHFWPPLKWFALAGAAAGLPPIVLR
SVAAARRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASRKATAGMSSL
MSMAPQNAVLAETGQVVATQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFP
VSKQADSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSNTQRLIDTCAKY

test/phylip.fasta  view on Meta::CPAN

>Vitis
QKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALN
QARLEANVRIYGAYQKKWPSPFAIVSGIXXXXSFLKYVYQPFRWLALGAVAAGIFPIAWR
GIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSL
MSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFP
VAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKSKTQRFIDKCTKF
YTPVVVLISAGLAGIPAALRVHDLSHWFHLSLVVLVSACPCALILSTPVATFCALSKAAV
SGLLIKGGEYLEILAKIRIMAFDKTGTITRGEFVVKDFQSLRDDVSSDTLLYWVSSIESK
SSHPMAAALFDYGLSQSVEPKPENVEEFQNFPGEGIHGKIDGKDIYVGNRKIALRAGCET
-GKTIGYVYSDATPTGIFTLSDACRTGVVEAIKELKLLGIKSAMLTGDSHASAMHTQDQL
GHTLEVVHAELLPEDKARIIKDFK-EEGPTAMIGDGVNDAPALATADIGISMGIAGSALA
TETGHVVLMTNDIRKIPKAVRLARKTHRKVVENVILSITTKAAILALAIAGHPLIWAAVL
ADVATHLIIISIVVPTAFLK-----------------------------
>Medicago
QKSYFDVVGLCCSSEVPLIENILKPLQGVKEVSVIVPSRTVIVVHDTLLISQLQIVKALN
QARLEANIRIYGNHKKKWPSIYSVASGLLLLLSFLKFVYTPFKYVALAAVVAGIYPIFLK
AIVSIRNLRIDINILVIIAVAGTIAMNDYLEAGTIVFLFSISDWLESSASHKSNAVMTSL
MSIAPQKAVIAETGEDVDVDEVRVNTILAVKAGEIIPIDGIIVDGDCEVDEKTLTGESFP
VAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMTKLVEDAQNSKTSTQRLIDKFAKF

test/phylip.fasta  view on Meta::CPAN

SETGNIILMSNDIRKIPEAIKLARKARRKVLENIVLSIMTKAAILGLAIGGHPLVWAAVV
ADVGTCLLVIFNSML--LLRHQHQHEQHNHDQHDQHEHHNHHCHLIHGC
>Oryza
QKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALN
QTRLEASVRAYGKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLR
SIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSAL
MSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGESFP
VSKQPDSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSSTQRLIDTCAKY
YTPAVVVMAGSVAAIPAIAKAHNLKHWFQLALVLLVSACPCALVLSTPIATFCALLRAAR
TGLLIKGGDVLESLASIKVAAFDKTGTITRGEFSVEEFQPVGERVSLQQLLYWVSSVESR
SSHPMASVLVDYAQSKSVEPKSENVSEFQIYPGEGIYGEIDGAGIYIGNKRILSRASCET
VGVTIGYVACNNELIGVFTLSDACRTGSAEAIKELRSLGIKSVMLTGDSSAAATYAQNQL
GNILAEVHAELLPEDKVRIVGELKEKDGPTLMVGDGMNDAPALAKADVGVSMGVSGSAVA
METSHVALMSNDIRRIPKAVRLARRTHRTIIVNIIFSVITKLAIVGLAFAGHPLIWAAVL
ADVGTCLLVIMYSMLLLREKHNHHEEPAHKHSSNQHGCHDHHTADLHPC
>Sorghum
QKSYFDVLGICCPSEVPLVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALN
QARLEASVRAYGKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLR
SFAAARRLTLDVNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSL
MSMTPQKAVLAETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFP
VAKQPDSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSKTQRLIDTCAKY
YTPAVVVMAAGVAVIPVAIRAHHLKHWFQLALVLLVSACPCALVLSTPVATFCALLTAAR
TGLLIKGGDVLETLARIKIAAFDKTGTITRGEFCVEEFQAVGERIPMQQLLYWVSSIESR
SSHPMASVLVDYALSKSVEPKSDNVTEFQIYPGEGIYGEIDGEGVYIGNKRILSRASCET
VGVTIGYVACKGQLIGVFTLSDSCRTGSAEAIRELRSLGIKSVMLTGDSSAAASYAQNQL
GNILDEVHPELLPEDKVRIVDELKAKHGPTLMIGDGMNDAPALAKADVGVSMGVSGSAVA
METSHITLMSNDIRRIPKAIQLARRTHRTIIVNIIFSVITKLAIVGLALSGHPLIWAAVL
ADVGTCMLVIMYSMLLLRSKHTHCKEPSSQHPTEKHACHDHHTAETHHC
>Brachypodi
EKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVVHDAAAISQSQIVKALN
QARLEASVRAYGKISNKFPSPYVLVCGALLVVSLFEHFWPPLKWFALAGAAAGLPPIVLR
SVAAARRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASRKATAGMSSL
MSMAPQNAVLAETGQVVATQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFP
VSKQADSQVWAGTLNIDGYIAVRTTAMADNSAVAKMARLVEEAQNSRSNTQRLIDTCAKY

test/phylip.p80  view on Meta::CPAN

10 709
Vitis QKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGAYQKKWPSPFAIVSGIXXXXSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVAKQ...
Medicago QKSYFDVVGLCCSSEVPLIENILKPLQGVKEVSVIVPSRTVIVVHDTLLISQLQIVKALNQARLEANIRIYGNHKKKWPSIYSVASGLLLLLSFLKFVYTPFKYVALAAVVAGIYPIFLKAIVSIRNLRIDINILVIIAVAGTIAMNDYLEAGTIVFLFSISDWLESSASHKSNAVMTSLMSIAPQKAVIAETGEDVDVDEVRVNTILAVKAGEIIPIDGIIVDGDCEVDEKTLTGESFPV...
Arabidopsis_thaliana@12345678 QTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKALNQARLEASVRPYGSLKSQWPSPFAIVSGVLLVLSFFKYFYSPLEWLAIVAVVAGVFPILAKAVASVTRFRLDINALTLIAVIATLCMQDFTEAATIVFLFSVADWLESSAAHKASIVMSSLMSLAPRKAVIADTGLEVDVDEVGINTVVSVKAGESIPIDG...
Glycine QKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNQARLEANIRVYGKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVGAYPIILKAIVSIRNLRLDINILMLIAVIGTIVMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNITPQKAVIAETGEVVDADEVKIDTVLAVKAGEVIPIDGVVLDGTCEVDEKTLTGESFPVA...
Oryza QKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQTRLEASVRAYGKITNKWPSPYVLLCGLLLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSALMSMAPQKAILAETGEVVAARDVKVNTVIAVKAGEVIPIDGVVVDGRSEVDESTLTGESFPVSKQ...
Sorghum QKSYFDVLGICCPSEVPLVEKLLRPLPGVHTVTVIVPSRTVIVLHDAAATSPAQIVKALNQARLEASVRAYGKVANKWPSPYVLFCGVFLVVSLFEHFWPPLKWFALVAAAAGLPPIVLRSFAAARRLTLDVNILMLIAVSGAIALKDYSEAGFIVFLFTTAEWLETRASHKATAGMSSLMSMTPQKAVLAETGEVVSAQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFPVA...
Brachypodium EKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVVHDAAAISQSQIVKALNQARLEASVRAYGKISNKFPSPYVLVCGALLVVSLFEHFWPPLKWFALAGAAAGLPPIVLRSVAAARRLTLDVNILMLIAVAGAIALKDYSEAGFIVFLFTTAEWLETRASRKATAGMSSLMSMAPQNAVLAETGQVVATQDVKVNTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGE...
Triticum EKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVLHDAAAISQAQIVRALNGARLEASVRAYGKVSNKWPSPYVLVCGVLLVVSLFEHFWRPLRWFAVAGAAAGLPPIVLRSVAALRRRTMDVNILMLIAVAGAIALKDYPEAGFIVFLFTIAEWLETRACGKATAGMSSLMSMAPQNAVLAETGQVVATQDVKINTVIAVKAGEVVPIDGVVVDGRSEVDESTLTGESFPV...
Hordeum EKSYFDVLGICCPSEVPLVEKLLEPLAGVHKVTVVVPSRTVIVLHDAAAISQAQIVRALNGARLEASVRAYGKVTNKWPSPYVLVCGVLLVVSLFEHFWRPLKWFAVAGAAAGLPPIILRSVAALRRRTMDVNILMLIAVAGAIALKDYSEAGFIVFLFTIAEWLETRACGKATAGMSSLMSMAPQNAVLAETGQVVATQDVKINTVIAVKAGEIVPIDGVVVDGRSEVDESTLTGESFPVS...
Selaginella ARTVLNVMGICCPSEVPLVRKILEPLPGVKEVSVNYTSRIVTVLHDRLLTPEGRLVKALNEARLDASLHHRGKRSSNWPSPWTICCGILLLVSFFKHFWNPLKWFAIGAVAVGIPPIFMRSIASLRRWILDINILMLIAVGGAIALTDYIEAGSIVFLFTLAEWLEGRSSEQARSALASGLD-VPRNAILAETGAMVPVDEVKLGSSIAVKAGEMIPVDGIIMSGECSLDESSLTGES...

test/phylip.phy  view on Meta::CPAN

           SGLLIKGGHA LETLAKIKVM AFDKTGTITK GEFAVTNFQS LSDDIDLNTL IYWVSCIESK
           SGFLIKTGDC LETLAKIKIV AFDKTGTITK AEFMVSDFRS LSPSINLHKL LYWVSSIECK
           SGLLIKGGDH LETLAKIKVM AFDKTGTITK GEFVVTHFQS LSDDIDLNTL AYWVSSIESK
           TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFQP VGERVSLQQL LYWVSSVESR
           TGLLIKGGDV LETLARIKIA AFDKTGTITR GEFCVEEFQA VGERIPMQQL LYWVSSIESR
           TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFRT AGERVPKQKL LYWVSSIESR
           TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFQT VGERVSKQQL IYWVSSIESR
           TGLLIKGGDV LESLASIKVA AFDKTGTITR GEFSVEEFQT VGERVSKQQL LYWVSSIESR
           LGVVIKGGSY LEILAKIKCL AMDKTGTLTE GHFRVSEVVP VGETEDLQQI LYWLTSVESR

           SSHPMAAALF DYGLSQSVEP KPENVEEFQN FPGEGIHGKI DGKDIYVGNR KIALRAGCET
           SSHPLAEAIV DHGRSLSIVP NPEKVTEFEN FPGEGICGKI DERVLYIGNK KIATRAGSET
           SSHPMAAALI DYARSVSVEP KPDIVENFQN FPGEGVYGRI DGQDIYIGNK RIAQRAGCLT
           SSHPLAAAIV DYGRSLSVEP EPEKVTEFEN FPGEGICGKI EGRVIYIGNK KIATRAGSET
           SSHPMASVLV DYAQSKSVEP KSENVSEFQI YPGEGIYGEI DGAGIYIGNK RILSRASCET
           SSHPMASVLV DYALSKSVEP KSDNVTEFQI YPGEGIYGEI DGEGVYIGNK RILSRASCET
           SSHPMASALV DHAQSNSVEP KSENVTEFQI YPGEGIYGEI DGKGVYVGNK RILSRASCQT
           SSHPMASALV GYAQSNSVEP KSENVAEFQI YPGEGIYGEI DGEGVYVGNK RILARASCQT
           SSHPMAAALV GYAQSNSVEP KSENVAEFQM YPGEGIYGEI GGEGVYVGNK RILARASCQI
           SSHPMAAALV TYASLQDVVP S-KSVTDFQI IEGEGVSAVV DGHLVEIGNA RLASRLGWSS

           -GKTIGYVYS DATPTGIFTL SDACRTGVVE AIKELKLLGI KSAMLTGDSH ASAMHTQDQL
           VGKTIGYIYS GPTPVGIFSL SDTCRSGVQE AIRKLKLLGI KTAMLTGDCQ SAAMQAQEQL
           ---------- ---------- ---------- --------GI QTAMLTGDNQ DAAMSTQEQL
           -GKTTGYIYL GATPLGFFSL SDTCRLGVQE AIGQLKSLGI KTAMLTGDSQ SAAMQAQEQL
           VGVTIGYVAC NNELIGVFTL SDACRTGSAE AIKELRSLGI KSVMLTGDSS AAATYAQNQL

test/ppred-25.phy  view on Meta::CPAN

79	185
Amphiprora     STLQVGIRVYLDQVLSLLEEIIANDNVVVLMGTGRQILESTKAGKIAQIPVGEQFLVVNPGAPIGKGIAMAISKSVCELQITSAMIQITSIAVTIKGENVVVVGIKSTVAQVVNIEERNMAYTIVVSASANDPTLIASAALAYFYKGKATLVVTQMAQMLRYLRAASDALGSMLIIQSSNSIRNV
Asterionel     STLQVGIRVYLDQVMSLLEEIIANDNVVVLMGSGRQILEGTKSGKIAQIPAGDDFLVVNPGAPIGKGLAVAISKSVCELQITSAMIQITSIAVTIKTENVVVVGIKSTVAQVVNCDEKGMPYTCVVSASANDPTLIAAAALAYFYKGKATLIICQMAQMLRYLRAASDALGSMLIIQSSNSIRNV
Asterion00     STLQVGIRVYLNQVMSLLEEIIANDNVVVLMGSGRQILESTIAGKIAQIPVGDGSLVVNPGAPIGKGLSMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGVKSTVSQVVNVDEKNLTYTIVVSASANDPTLIAAAALAYFYKGKATLVITQMAQMLRYLRAASDALGSMLIIQSSNSIRNV
Aureococcu     SRLQVGIRVYLQKVMALLENVIANDNVVVLMGTGLNIIESARAGQIATIVVADGFLVVNPSVPIGKGISMAISKSICEAQISSAMIQITAAAVTIAQGDCVVVGIKATVKSVVKVQAEGMGYTVIVTASANPPTLIAVAALAYFYKGQATLIITQMAQMLRYLRSASDSLGSMLIIQSSESRRNT
Aureoumbra     SRLQVGIRVYLQKVMALLENVIATDNVVVLMGKGLNIIESTRSGKIATIVVGESFLVVDPSLPIGKGISMAISKSICEAQISSAMIQITAAAVTIATGNCVVVGIKSTVASVVKVQAKGMSYTVIVTASANSPTLIAVAALAYFYKGQSTLIITQVAQMLRYLRSANDALGSMLVIQSAESRRNT
Calliarthr     STLQVGIRVQLDQVMALLENIISTTNVVVLMGTGGQIDESVRAGKISTLIVGDAFLVVDPASLINKGISMAISKSICETQITSAMIQITAIALTIKQGDCVVVGVKSTIAQIVNTHAKGMPYTVVVAACANPSTLIAAASLAYFYQIKATLVVTQVAQMLRYLRAASDQLGSMLIIQSSKSIRNV
Chattonell     STLQVGIRVYLDQVMFLLENILANDNVVVLMGKGRQILESVRSGRIATIVVADGYLVVNASLVITKGVSMTFSKSICQLQITSAMISITAIALTIKQEDCVVAGVKSTVAQTVTTQEKGTDYTVVITAGANPSTLIAAAAIAHFSRGQITLIVTQVAQMLRYLRASNPGLGSMLIIQSSHSVRNV
Chondrus_c     ATLQVGIRVQLSQVMALLENIIAATNVVVLMGTGAQITESVRAGKISTLAVGDNLLVVNPAAPINKGISMAISKSICETQITSAMIQITAIALTIKQGDCVVVGIKSTVAQIVNTQAKGMSYTVIVSACADPSTLIAAASLAWFYNIQATLVVSQVAQMLRYLRAASDELGSMLIIQSSESIRNV
Chroomonas     MTLQVGIRVQLQQVMALLEHIIASTNVVVLMGTGKQITESVRAGKIATLIVGDTVMVVNPSVPIGKGISMAISKTICETQITAAMIQITAVALTIKTGDCIVVGIKSTVSNIVNVQAKGLSYTVIVASSANTPTLIASASIAYFYNVQATLIINQVAQMLRYLRAASDDLGSMLIIESSGSIRNV
Chrysochro     MTLKVGIRVQLDSVMALLENIISATNVVVLMGTGTQITETVRAGRVSTMVVGEGFLVVNASVAIDKGIPVAISKSICEAQIQTSMIQITAIALTIKKGDCIIVGVKSTVAQVVTVREEGMGYSVIVYANANSPTLIASASVSYFYLIKATLVISQTAQMLRYLRAASDALDSMLVIQSSKSIRNI
Chrysophyc     ALIQVGIRVYLDEVMFLLENIIAADNTAVLMGQGVQIYESVKAGRIATIVAGQKYLVVNPAVPMGKGLSSALGLPICEDQIVAAIIQLTAIALTMKTEDCVVVGIKSTVSQIVSTKEKGLRYTVVVSASASPPTLIAGDAIAYFYKGSAILIINPQAQMLRYLRAAVIALGSTLIITGSKSIKDV
Compsopogo     STLQVGIRVELNLVMALLENVIANTNVVVLMGTGKLIAESVRAGKIATLVTGDSYLIVDAANAISKGVSMAISKSICETQITSAMIQITAIALTMKKGDCVVVSLKSTVAQAVNVQAKGLDYTVIVAACANPATLIASASISYFYNIKATSVVSQVSQMLRYLRAASGALGSMLIIESSRSIRNV
Coscinodis     STLQVGIRVYLDQVMSLLEEIIATDNVVVLMGNERQILESTKAGKIAQIAVGEGFFVVNPGTPIGKGVSMAISKSVCELQITSAMIQIASIAVTIKSEDVVVVGIKSTVAQVVSADEKNMAYTIVVSASANPPTLIAVAAFAYFYKGKATLVLTQMAQMLRYLRAASDSLGSMLIIQSSQAIRNV
Cryptomona     MTLQVGIRVQLDNVMALLEHIIANTNVVVLMGSGKEITESVRSGKIATLVVGDAVLVVNPSVPIGKGISAAISKTICETQITASMIQITAVALTIKKGDCIVVGVKSTVANVVNVQAKGMSYTVIVAASANAPTLIASASIAYFYNIKATLVVSQVAQMLRYLRAADDELGSMLIIQSSNSIRNV
Cryptomo00     MTIQVGIRVQLYSVKALLEHIIATSNVVVLMGTGLDIAESVRLGKIATLIVPDKVLVVSPAVAIGKGVFPALSKTVCELQITASMIQITAVALTIKGGDCVVVGIKSTVASVVEQQEKGLQYTVIIAAAANQPTLLASAAVAYFYSIKATLVISQVAQMLRYLRAANQDLNSMLIIQSANSIRNV
Cryptophyc     MTLQVGVRVQLQQVMALLEHIIASTNVVVLMGTGKQINESVRAGKIATLIVENNILVVNPSVPIGKGISMAISKTICETQITAAMIQITAVALTINKGDCIVVGIKSTVASIVNAQAKGMSYTVVVAASANTPTLIASASIAYFYHVKATLVISQVAQMLRYLRAASDEMGTMLIIQNSNSIRNV
Cylindroth     ATLQVGIRVYLDQVMALIEEIIANDNVVVLMGPGRQILESTKAGKIAQIPVGEEFLVVNPGAPIGQGLAMAISKSVCELQITSAMIQISSIAVTIKGSDVVVVGVKSTVAQVCNVEEKSMSYTIVVAASANDPTLIAAAALAYFYKGKATLIITQMAQMLRYLRAASDSLGSMLIIQSSNSIRNV
Desmaresti     STLQVGIRTYLNKVMFLLEDIIATDNVVVLMGTGSLILESARAGEIATLPVGDGYLVVDAQVPISIGVLMAIQKSICQTQITSSMIQITAIALSIKQGDCVVAGIKSTVASVVSVRAKGLGYTVIVFAGANPPNLIAAAAIAYFSNGKATVIFTQVAQMLRYLRAAFDGLKSMLIIKSSQSIRNL
Dictyocha_     STLQVGIRVYLEKVMALLENIIANDNVVVLMGEGRQIIESVRAGKIATIVVGDAYLVVDPSIAIGKGIPMAISKSICEAQISSAIIQISAIAITIKQGDCVVVGVKSTVAQTVKTQAKGTAYTVIVAASANPATLIAAAALAYFYKGQATLVVTQVAQMLRYLRAASVALGSMLIIQSSQSRRNV
Dictyopter     DQIQVGIRTYLNQVMFLLEDIIATDNVVVLMGTGRLILESGRAGQIATIPVGNGYLVVDAQVPISIGILMAIQKSICQTQITSSMVTITAIALSIKKGDCVVAGIKATVETVVSVRAKDLSYTVIVFAGANATNLIATAAIAYFSLGKATVIFTQVAQMLRYLRAAFDGLKSMLIIKSSKSIRNV
Didymosphe     STLQVGIRVYLDQVMSLLEEIIATDNVVVLMGTGRQILESTKAGKIAQIPVGDEFLVVNPGIPIGKGLAMAISKSVCELQITSAMIQITSIAVTIKGENVVVVGIKSTVAQVVNVEEKNMAYSIVVAASANDPTLIASAALAYFYRGKGTLVITQMAQMLRYLRAASDALGSMLIIQSSNSIRNV
Durinskia_     STLQVGIRVYLDQVMALLEEIIANDNVVVLMGPGRQIFESTKAGQIAQIPVGEEFLVVNPGAPIGQGLAMAISKSVCELQITSAMIQITSIALTIKTENVVVVGIKSTVAQVCNVEEKSMSYTIIVSASANDPTLIAAAALAYFYKGKATLVITQMAQMLRYLRAASDSLGSMLIIQSSNSIRNV
Ectocarpus     ATLQVGIRTYLNQLMFLLEDIIATDNVVVLMGTGALILESARAGEIATLPVGDEYLVVDSQVPISIGILMAIQKSICQTQITSSMIQITAIALSIKQGDCVVAGIKSTVASVVSVRAKGLGYTVIVFAGANPPNLIAAAAIAYFSNGKATVIFTQVAQMLRYLRAAFDGLNSMLIIKSSQSIRNV
Emiliania_     MTLKVGIRVQLDSVMALLENIISTTNVVVLMGTGAQITESVRAGKVSTIVVGNAFLVVDAAVAIGKGIPMAISKSICEAQIQTAMIQITAIAITIKSGDCIVVGIKSTVAQVVKVRAKGMGYSVIVYASANAPTLIAAASVYYFYLVKATLVVTQSSQMLRYLRAANDNLDSMLIIQSSKSIRNV
Eunotia_sp     STLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGRQILESTKSGKIAQIPVGEEFLVVNPAAPIGKGLAMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGVKSTVAQVVNSEEKNLAYTIIVSSSANDPTLIAAAALAYFYKGKATLVITQMAQMLRYLRAASDSLGSMLIIQSSNSIRNV
Eustigmato     ITLQIGIRNYLSQVMFLIETILANINVAVLMKDGRAINESASYGRIAPIISGKQFLVLNAAIPIGKGISPALSKPVCEAQITSALIQITAITLTIRTEDCIVVGIKSTVSQLVEDQEKDLAYTVIVAACADSSTLIAGAAIAYFYNHKATLVLTQLAQMLQYLRSGNDNLGSMLIIQSSESIRNV
Extubocell     STLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGKQILESTKAGKIAQIPVGEGFLVVNPGSPIGKGLSMAISKSVCELQITSAMIQITSIANTIKSENVVVVGVKSTVATVVNVDEKQMSYTIIVAASATDPTLIAAAALAYFYQGKATLVITQMAQMLRYLRAASDALGSMLIIQSSKSIRNL
Fistulifer     ATLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGRQILESTRAGKIAQIPVGNEFLVVNPGTPIGKGLAVAISKSVCELQITSAMIQITSIAVTIKSEDVVVVGIKSTVAQVVNVEEKGMSYSIVVAASAQNPTLIASAALAYYYRGKGTLVITQMAQMLRYLRAASDSLGSMLIIQSSNSIRNV
Fucus_vesi     STLQVGISTYLNQVMFLLEDIIATDNVVVLMGTGSLILESARSGEIATLPVGEGYLVVDAQVPISIGVLMAIQKSICQTQITSSMIQISAIAMSIKQGDCVVAGVKSSVASVVSVRSNGLGYTVIVFAGANPPNLIAAAAIAYFSKGKATVIFTQVAQMLRYLRAAFDGLGSMLVIKSSKAIRNV
Geminigera     MTFQVGIRVQLQQVMALLEHIIASSNVVVLMGTGKEITESVRAGKIATLIVGDALLVVNPSIAIGKGISMAISKTICETQITAAMIQITAVALTIKKGDCIVVGIKSTVASIVSVQAKGMSYTVIVAACANAPTLIASASIAYFYSVKATLVISQVAQMLRYLRAASDNFGSMIIIQSSNSVRNV
Gracilaria     ATLQVGIRVQLIQVMALLENIIATTNVVVLMGNGAQINESVRAGKISTLAVGEDLAVVNPAVPINKGVSMAISKSICETQITSSMIQITAIALTIKQGDCVVIGIKSTISQICNTQEKGMAYTIVVAACADSSTLIASASLAWFYKIQATLVITQIAQMLRYLRAASNELGSMLIIQSSKSIRNV
Gracilar00     ATLQVGIRVQLVQVMALLKNIIATNNVVVLMGNGAQINESVRAGKISTLAVGDNLAVVNPAVPINKGISMAISKSICETQITSSMIQITAIALTIKQGDCVVVGIKSTISQICNTQAKGMSYTIVVAACADPPTLIASASLAWFYNIKATLVITQIAQMLRYLRAASNELGSMLIIQSSKSIRNV
Grateloupi     ATLQVGIRVQLVQVMALLENIIAATNVVVLMGAGGQINESARAGKISTLAVGEDLLVVSPAVPINKGISMAISKSICETQITSSMIQITAIALTIKNGNCVVVGIKSTVSQICNTQAKGMSYTIIVAACADPSTLIAAASLAWFYNVQATLIVSQVAQMLRYLRAASDQLGSMLIIQSSKSIRNV
Guillardia     MTFQVGIRVQLQQVMALLEHIIASTNVVVLMGTGKQITESVRAGKIATLIVGDAVLVADPSVPIGQGISMAISKTICETQITAAMIQITAVALTIKKGDCIVVGIKSTVASVVTVQAKGMEYTVVVAACANAPTLIASASIAYFYHVKATLVITQVAQMLRYLRAASDDLGSMLIIQSSNAIRNV
Hemiselmis     MTLQVGIRVQLQQVMALLEHIIASTNVVVLMGTGKQITESVRAGKIATLIVGDAVLVVNPSVPIGKGISMAISKTICETQITAAMIQITAVALTIKKGDCIVVGIKSTVANIVNIQAKGMNYTVIVASSANTPTLIASASIAYFYNIKATLVISQVAQMLRYLRAANDQLGSMLIIESSNSIRNV
Heterosigm     STLQVGIRVYLDQVMFLLENILANDNVVVLMGKGRQILESVRSGRIATIIVGEGYLVVNASLIITKGVSVTFSKSICQLQITSAMISITAIALTIKQEDCVVAGIKSTVAQTVTTQEKGTDYTVIVKAGAKSSTLIAAAAIAHFSKGQITLIVTQVAQMLRYLRASNPGLGSMLVVQSSHSVRNV
Ishige_oka     ATLQVGIRSYLNQVMFLLQNIIANDNVVVLMDEGRLILESTRTGEIATLIVGEGYLVIDAQVPISVGILMAIQKSICQTQITSSMIQITAIALTIKQGDCVVAGVKSTVAAVVSVRAEGLSYTVIVFAGADPPNLIAAAAIAYFSNGKATVIVTQVAQMLRYLRAAFDSLKSMLIIKSSKSIRNV
Isochrysis     MTLKVGIRVQLDSVMALLENIISTSNVVVLMGTGGQITESVRAGRVSTVVVGNSFLVVDASIAIGKGIPMAISKSICEAQIQTAMIQITAIAITIKGGDCIVVGIKSTVAQVVKVRAKGMGYSVIVYASANAPTLIASASLYYFYKVKATLVITQSAQMLRYLRAANDNLDSMLIIQSSESIRNV
Isochrys00     MTLKVGIRVQLDSVMALLENIISTSNVVVLMGTGAQITESVRAGRVSTVVVGDNFLVVDASVAIGKGIPMAISKSICEAQIQTAMIQITAIAITIKSGDCIVVGIKSTVAQVVKVRAKGMGYSVIVYASANAPTLIAAASVFYFYKIKATLVVTQSSQMLRYLRAANDNLDSMLIIQSSKSIRNV
Karlodiniu     SRLKVGIQVRLYAQMELLESIISETNVAVLLGTGLNIQEGTRAGRVSTVYTPDGVLVISAHAPIGKGLLMALVKSVCELQITAAIIQVTAVALTIKKEDCIVVGIKSLVFQVVSVRYRGMEYTVIVVSCSRSPTLIAEVSIAYFHKVRATVVLTQSAQMLRYLKADNDALGSMLIIQSSSSIRNI
Kryptoperi     ATLQVGIRVYLDQVMALLEEIIANDNVVVLMGPGRQILESTKAGQIAQIPIGEEFLVVNPGAPIGQGLSMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGIKSTVAQVCNVEEKSMSYTIIVSASANDPTLIAAAALAYFYKGKATLVITQMAQMLRYLRAASDDLGSMLLIQSSNSIRNV
Leptocylin     ATLQVGIRVYLDNVMALLEEIIANDNVVVLMGTGRQISESTKAGKIAQVPVGAGFLVVNPGNPIGKGIAMAISKSVCELQITSAMIQITSIAVTIKTEDVVVVGIKSTVAQVVNVEEKGLSYTIVVAATASPPTLIAAAALAYFYKGKATLVVTQMAQMLRYLRAASDALGSMLVIQSSQSIRNV
Lithodesmi     STLQVGIRVYLDQVMSLLEEIIANDNVVVLMGSGKQILESTKSGKIAQIPVGDGFLVVNPGNPISKGLSMAISKSVCELQITSAMIQITSIAVTIKKENVVVVGVKSTVGQVVNVDEKNMAYTIIVAASANDPTLIAAAALAYFYKGKATLIITQMAQMLRYLRAASDALGSMLIIQSSQSIRNV
Mallomonas     VLIQVGIRVYLDEVMFLLEEIISSDNTAVLMGQGRKIYESVKAGRIATVVAGDSYLVVDAATPIGKGLSMALSLPICEDQITAAIIQLTAIALTMKTSNCVVAGIKSTVAQVVTTKAKGLSYTVIIAASASPPTLIAGDAIAYFYKGGAILIVTPQAQMLRYLRAAVMNLGSMLIITGSKSIKDV
Nannochlor     IKLQIGIRNYLSQVMFLIEIVLATINVAVLMKDGRTINESASYGRIAPIVAGKQYLVLNPAVPIGKGISAALSKPVCEAQITSALIQITAITLTIRKEDCVVVGVKSTVKQLVDDQEKDLLYTVIVGACADDSTLIAGAAIAYFYKNKATLVLTQTAQMLQYLRSGDDALGSMLIIQSSEAIRNV
Nannochl00     IKLQIGIRNYLSQVMFLIETVLATINVAVLMKDGRTITESASYGRIAPIVAGKQYLVLNPAVPIGKGISAALSKPVCEAQITSALIQITAITLTIRKEDCIVVGVKSTVSQLVDDQEKDLPYTVIVGACADASTLIAGAAIAYFYKNKATLVLTQTAQMLQYLRSGDDELGSMLVIQSSEAIRNV
Ochromonas     ALIQVGIRVYLDEVMFLLENIIASTNTAVLMGQGRQIYESVKAGRIATIVAGKAYLIVNPAVPLGKGLSTALGLPICEDQISAAIIQLTAIALTMKTEDCIVVGIKSTVSQIVSTKSKGLSYTVIVSASASPPTLIAGDAIAYFYKGSAILIINPQAQMLRYLRAAVVELGSTLIITGSKSIKDV
Odontella_     STLQVGIRVYLDQVMSLLEEIIAADNVVVLMGTGTQIVESTKAGKIAQIPVGEAFLVVNPGSPIGKGLSMAISKSVCELQITSAMIQITSIAVTIKSENVVVVGVKSTVAQVVKVNEKQMAYTIVVAASANDPTLIASAALAYFYQGKATLVITQMAQMLRYLRAASDALGSMLIIQSSQSIRNI
Pavlova_lu     MTLQVGIRVQLDQVMVLLENIIANTNVVVLLGTGVNIIESVRAGKISTLVVGNDLLVVDAGEPIGKGISMAIGKPICETQITTAMIQIEAIALTIKKGICVVVGIKATVAQIVRAQAKGMSYTVVVAASADAPTLIAAASISYFYFVKATLVITQMAQMVRYLRAAGTDLNSMLVIQSSRSIRNV
Pavlova_00     MTLQVGIRVQLDQVMVLLENIIANSNVVVLMGKNLNIVESVRAGKISTLVVGDALLVVSPAAPIGKGISMAISKPICEAQITTAMIQIEAIALTIKQGVCVVVGIKATVAQVVRTEAKGMSYTVVVAACADTPTLIAAACISYFYFVKSTLVITQMAQMLRYLRAAGPELNSMLIIQSSRSIRNV
Pavlovales     MTLQVGIRVQLDQVMVLLENIIANTNVVVLLGTGLNIIESVRAGKISTLVVGNNLLVVSAGEPIGKGISMAISKPVCETQITTAMIQIEAIALTIKQGVCVVVGIKATVAQVVRAEAKGMSYTVVVAASADTSTLIAAASISYFYFVKATLVVTQMAQMLRYLRAAGTDLNSMLIIQSSRSIRNI
Pedinellal     STLQVGIRVYLNKVLSLLENIIANDNVVVLMGQGRQIVESVFSGKIATVVVPDGYLVVDPSIPINKGIPMAISKSICEAQITSAMIQITAIAITIKQGDCVVVGVKSTVAQTVKTEAKGMLYTVIVSASASSPTLIAAAALAYFYNGKATLVVTQVAQMLRYLRSASQALGSMLLIQSSKSRRNV
Pelagophyc     SRLQVAIRVYLHKVMALIENVIATDNVVVLMGRGLNIIESARAGKIATIIVPDGFLVVNPSIPIGKGISMAISKSVCEAQISTAMIQITAAAVTIATEDCTVVGIKATVASTVRAQAKGMGYTVIVYSSANPPTLIAVAALAYFYQGQATLVVTQVAQMLRYLRSASSFLGSMLIIQSAESRRNT
Phaeocysti     MTLKVGIRVQLDTVMALLEKIISTTNVVVLMGTGIQITESVRAGKVSTVVTGEGFLVVNASIPIGKGISMAISKSICEAQIQAAMIQITAIALTIKKGDCIVVGVKSTVAQVVTVRAKGMSYSVVVYANANAPTLIAAASVRYFYFIKATLVVSQIAQMLRYLRAASDELNSMLIIQSSKSIRNI
Phaeocys00     MTLKVGIRVQLDTVMALLEKIISTTNVVVLMGAGVQITESVRAGKVSTVVTGEGFLVVNASIPIGKGISMAISKSICEAQIQAAMIQITAIALTIKKGDCIVVGVKSTVAQVVKVRAKGMSYSVVVYANANAPTLIAAASVRYFYFIKATLVVSQIAQMLRYLRAASDDLDSMLIIQSSKSIRNI
Phaeodacty     STLQVGIRVYLDKVMSLLEEIIANDNVVVLMGTGRQILESTRAGKIAQIPVGEEFLVVNPGTPIGKGLSMAISKSVCELQITSAMIQITSIAVTIKGENVVVVGIKSTVAQVVTAEEKNMAYTIVVSASANDPTLIASAALAYFYKGKGTLVITQMAQMLRYLRAASDNLGSMLIIQSSNSIRNV
Phaeomonas     STLQVGICVYLDQVMSLLENVIANDNVAVLMGSGRQILESTRAGTIATIIVGQAFLVVSPSVPIAKGIFLAISKSICEAQITAAMIQITAIALTIEQEDCVVVGVKSTVAETVTTEAKGMSYTVIVSASSDPPTLIAAAAIANFYKGKATLVITQVAQMLRYLRAANDKLGSMIIIQSSKSIRNV
Pleurochry     MTLKVGIRVQLDSVTALLENIISTTNVVVLMGEGTQIISSVRSGRVSTIVVGEEFAIVNASVAIGKGISMAISKSICEAQIQTAMIQITAIAITIKSGNCIVVGIKSTVAQVVKVRAKNLGYSVIVYANANAPTLIAAASVYYFYLIKATLIISQAAQMLRYLRAANDKLDSMLIIQSSKSIRNI
Porphyra_p     STLQVGIRVQLDQVMALLESIIATSNVVVLMGTGKQINESVRAGKISTLIVSDGFLVVNAAIAINKGISLSISKSICETQISSAMIQITAIALTIASGDCVVVGIKSTVAQIVNAQAKGMVYTVLVSACANPSILIAAASIAYFYSIKATLVVTQVAQMVRYLRAASNDLGSMLIIQSSKSIRNV
Porphyra00     STLQVGIRVQLDQVMALLESIVATSNVVVLMGTGKQINESVRAGKISTLIVSEGFLVVNAAIAINKGISLSISKSICETQISSAMIQITAIALTIASGDCVVVGIKSTVAQIVNTQAKGLVYTVLVSACANPSILIAAASIAYFYNIKATLVITQVAQMVRYLRAASNDLGSMLIIQSSKSIRNV
Porphyridi     STLQVGIRVQLDQVMALLESVLANDNVVVLMGTGELITESVQAGKISTLIVGDGFLVVNPGVAISKGISMAISKSICETQITSAIIQITAIALTIKSGDCVVVGVKSTVGQIVNTEARNLDYTVVVSAAANSSTLIAAASIAYFYNIQATLVVTQVAQMLRYLRAASDDLGSMLIIQSSNSIRNV
Proteomona     MTIQVGIRVQLQQVMALLEHVIASMNVVVLMGTGKQITESVRAGKIATLVVGEDVMVVNPSVPIGKGISMAISKTICETQITAAMIQITAVALTIKKGNCVVVGIKSTVANIVNVQAKGMSYTVIVKASANAPTLIASASIAYFYHIKATLVVTQVAQMLRYLRAASDELGSMIIIQSSNSIRNV
Prymnesium     MTLKVGIRVQLDSVMALLENVISTTNVVVLMGAGIQITETVRAGRVSTIVVGQGFLVVNASVAIGKGIPVAISKSICENQIQTSMIQITAIALTIKKGDCIVVGIKSTVAQVVTIRAKGMGYSVMVYGNANGPTLIASASVSYFYLIKATLVISQNAQMLRYLRAASDKLDSMLVIQSSKSIRNV
Pyropia_ha     STLQVGIRVQLDQVMALLESIIATSNVVVLMGTGKQINESVRAGKISTLIVSDGFLVVNAAIAINKGISLSISKSICETQISSAMIQITAIALTIATGDCVVVGIKSTVAQIVNTQAKGMVYTVLVSACANPSILIAAASIAYFYNIKATLVVTQVAQMVRYLRAASNALGSMLIIQSSKAIRNV
Pyropia_00     STLQVGIRVQLDQVMALLESIIATSNVVVLMGTGKQINESVRAGKISTLIVSDGFLVVNAAIAINKGILLSISKSICETQISSCMIQITAIALTIASGDCVVVGIKSTVAQIVNTQAKGMAYTVLVSACANPSILIAAASLAYFYNIKATLVVTQVAQMVRYLRAASNDLGSMLIIQSSKSIRNV
Rhizochrom     STLQVGIRVYLDKVLSLLENIISSDNVVVLMGQGRQIIESVRAGKIATVIVPNGQLVLDGSMPIGIGIFIAISKSICEAQITSAMIQISAIAITIKGGDCVVVGIKSTVAQIVKTKAKGMSYTVIVSASASAPTLIATAALAYFYKDKATLVITQVAQMLRYLRAASATLGSMLIIQSSKSRRNV
Rhodella_m     STLQVGIRVQLDQVMALLENIIANTNVVVLMGAGLQISESVRAGRISTLVVGNEFLVVNPAIVISKGISFAISKSICETQITSALIQITAIALTIKQGDCVVIGIKSTVSQIVNTQVKGMDYTVIVTASANPSTLIAAAAVAYFYNVKATLVIGQVAQMLRFLRAASDDLGSMLIIQSSKSIRNV
Rhodomonas     MTLQVGIRVSLQQVMALLEHIIASTNVVVIMGSGKRINESVRAGKITTLIVGDGVLVVNASIPIGKGISMAISKTICETQITAAMIQITAVALTIKKGDCIVVGIKSTIANIVKVQAKGMSYTVIISASANAPTLIASASIAYFYHIKSTLVISQVAQMLRYLRAASNDLGSMIIIQSSNSIRNV
Saccharina     STLQVGIRTYLNQVMFLLEDIIATDNVVVLMGTGSLILESARAGEIATLPVGEGYLVVDAQVPISIGILMAIQKSICQTQITSSMIQITAIALSIKQGDCVVAGIKSTVASVVSVRAKGLGYTVIVFAGANPPNLIAAAAIAYFSNGKATVIFTQVAQMLRYLRAAFDGLKSMLIIKSSKSIRNV
Sargassum_     STLQVGISTYLNRVMFLLEDIIATDNVVVLMGTGSLILESARAGEIATLPVGQGYLVVDAQVPISIGVLMAIQKSICQTQITSSMIQITAIALSIKQGNCVVAGIKSTVASVVSVRSNGLGYTIIVFAGANPPNLIAAAAIAYFSNGKATVIFTQVAQMLRYLRAAFDGLGSMLVIKSSQAIRNV
Stylonema_     IILQVGIRVQLDQVMALLEKVIASTNVVVLMGTGKNIRESVRLGRIATLVVPDGFLVVNPAIPISKGISIAISKSICETQITSSMIQITAIALTIKQGDCIVVGIKSTVSQIVNTQAKGMEYTVIVAASASPSTLIAAASIAYFYSIKATLVLTQVAQMLRSLRAANDDLGSMLIIQSSKSIRNV
Synchroma_     IQIQVGIRVLLDEVLFLLENIIASTNTAVLMGSGLRILESTRAGRIATIKAGQAYLVVSPSAPIGKGISMALAKSICEDQITSSMIQLTAIALTIKKEDCIVVGIKSTVAQIVGTRVKGLKYTVIVAASANPPTLIATAALAYFYDGQAIIVVTPVAQMLRYLRAALKSLDNMLIITSSNSIKNV
Synedra_ac     STLQVGIRVYLDQVMSLLEEIIANDNVVVLMGNGRKILEGTKSGKIAQIPVGKEFLVVNPGSPIGKGLAMAISKSVCELQITSAMIQITSIAVTIKNENVVVVGIKSTVAQVVRCDELGMPYTCIVAACANDPTLIAAAALAYFYKGKSTVVITQMAQMLRYLRAASDALGSMLIIQSSNSIRNV
Synura_spe     SLIQVGIRVYLEETMALLEDIISSDNTAVLMGQGAQIYESVKAGKIATVPAGDTNLVVDAASPIGKGLSMALSLPICEDQITAAIIQLTAIALTMKKEDCVVAGIKSTVAQVVATKAKGLLYTVVVAASASPPTLIAGDAIAYFYKNGAILVVSPQAQMLRYLRAAVSALGSMLLITGSKSIKDV
Thalassios     STLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGKQILESTKSGRIAQIPVGDGFLVVNPGNPIGKGLLMAISKSVCELQITSAMIQITSIAITIRTEDVVVVGVKSTVAQVVKVDEKNMSYTTIVAASANDPTLIAAATLAYFYKGKSTLIITQMAQMLRYLRAAFDDLGSMLIIQSSQSIRNV
Thalassi00     STLQVGIRVYLDLVMSLLEEIIANDNVVVLMGAGKQILESTKSGKIAQIPVGNGFLVVNPGHPIGKGLLMAISKSVCELQITSAMIQITSIAITIRTEDVVVVGIKSTVAQVVTVDEKNMSYTIIVSASANDPTLIAAATLAYFYKGKATLIITQMAQMLRYLRAAFDDLGSMLIIQSSQSIRNV
Uncultured     ARLQVGIRVYLNKVMALLENVIANDNVVVLMGTGLNIIESARAGQIATIVVADGFLVVNPSVAIGKGISMAISKSICEAQISSAMIQITAAAVTIATSNCVVVGIKATIASVVKVQSKGMSYTVIVTASANPPTLIAVAALAYFYKGQATLIITQMAQMLRYLRSASDSLGSMLIIQSSESRRNT
Uncultur00     MTLKVGIRVQLDSVMALLENIISTTNVVVLMGTGIGITEGVRAGRVATIIVGDGFLVVNASVAIGKGVPMAITKSICEAQIQTAMIQITAIALTIKKNDCVVVGIKSTVAQVVQVRAKGMGYSVIVYANANSPTLIASASVSYFYLIKATLVISQTAQMLRYLRAASNELDSMLIIQSSKSIRNI
Vaucheria_     STLQVGIRVYLNQVMFLLEHIIANMNVVVLIETGRQILESARAGKIATVIVGDQFLVVNARVPLGKGILMAISKSICQAQITSAMIQITAIALTIKKSDCIVAGIKSTVSQVVTVKAKGMGYTVIVAAGANPPTLIASAAVAYFSQGKATVIITQSAQMLRFLRAAFDGLNSMLIIQSSEAIRNV

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Didymosphe     ITLQVGIRVYLDQVMALLEEIIANDNVVVLMGTGRQILEGTKSGKIAQIPVGDEFLVVDPGAPIGKGLAMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGVKSTVSQIVNVEEKNMSYTIIVAASANDTTLIAAAALAYFYKGKATLVIAQMAQMLRYLRAASSALGSMLILQSSNSIRNV
Durinskia_     ITLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGLQILESTKAGKIAQIPVGDEFLVVKPAAPIGKGLAMAISKSVCELQITLAMIQITSIAVTIKTEDVVVVGVKSTVAQVVNVEEKNLAYTIIVSASANDPTLIAAAALAYFYKGKATLVVTQMAQMLRYLRAASDALGSMLIIQSSNSIRNV
Ectocarpus     LTLQVGIKLYAEQAMAILEEIIADENEVVIMGQGINLLESSKNDKISLVNSGDAYAVVNAVTPIGKGLSTAISRSVCEEQIVSAMIQITSTAVTIATDNVVVVGIKSTVAQVIHIQRKGQSYTIIVAACSAPVTLIATASIAYFYTGKATIIITETAQMLRYLRAADKNLGKMLIIQASGSIRNV
Emiliania_     ISLQKGINVYLEEVMTLIQQIVANENDVVLMGTGLRLLQSSKAGKISQIQTGSAYLVVNGGGPIGKGIGDAISKSVCEPRITSSMITITSMAVTIKTEDVVVVGVKSTVSEIVTVELKGKPYTIIVTASNADSTLIATTCVAYFYKGRATLVINQMAQMLRYLRAADSSLDKMLIIQGNGSLLNV
Eunotia_sp     ITLQVGIRVYLDKVMSLLEEVIANDNVVVLMGTGRQILESTKAGKIAQIPVGDEFLVVNPGAAIGKGLAMAISKSVCELQITSAMIQITSIAVTIKTEDVVVVGVKSTVAQAVTVQQKNMSYTIVVSASANDPTLIAAAALAYFYKGKATLVVTQMAQMLRYLRAASSTMGSMLIIQGSNSIRNV
Eustigmato     ITLQVGIKVYLADAMMLIEELISNENDVILMGTSFALEEGSKAGKVAQVMTPDRTLLVNAGFPIEQGISMAISRSVCEDQITSSMIQITSTALNIATEGVVVIGIKSTVAQAVATEKVGQEYTIVVTASASDSTLITTAALANFYKGRATLLVTAMARMLRYLKAADEDLDKMLIIQGSGSVRNI
Extubocell     IILQVGIRVYLDQVMSLLEEIIANDNIVVLMGKGRQLLESTKTGKIAQIPTGDEFLVVNPGTPIGKGIAMAISKSVCELQITSAMIKITSIALTIKTENVIVVGIKSTVAQVVTTEEKGLSYTIVVTASANDPTLIAAAALAYFYRGRATLVVTQMAQMLRYLRAANDALGSMLIIQSSNSIRNV
Fistulifer     ITLQVGIRVYLDQVMALLEKIIANDNVVVLMGTGRQILESTKAGKIAQIPVGDEFLVVDPGTAISKGLSMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGVKSTVAQVVNVEEKNLSYTIIVAASANDTTLIAAAALAYFYKGKATLIVTQMAQMLRYLRAASDALGSMLILQSSNSIRNV
Fucus_vesi     LTLQVGIKLYLDDAMAILEEVIADENDVVIMGTGIKLLESTKSDKIALINSGQAYLVVDSVAPIGKGLSSAISQSVCENQITSAMIQITSTAVTIAIDNVVVVGIKSTVAQAIHIQRKGQQYTIIVAACSAPTTLIATAAIAYFYTGKATIIITESAQMLRYLRAADKNLGKMLIIQASGSIKNV
Geminigera     ITLQVGIKVYLQQVMALIQNIIANGNDVVLMGTSIRLLQSSKAGKIAQIPTGQAYLIVNGGGAIGKGIGTAISQSVCESRITSAMIIITALAVTIKTEDTVVVGIKSTVAQVVNVEIKGQANTIIVAACSSDSTLIASACIAYFYKGKATLVITQQAQMLRYLKAANDSLGKMLIIQSSGSLRDV
Gracilaria     ITLQVGIKIYLEQVMTLIQNVIASENDVVLMGQGIRILQTAKAGKIAQIPSGDDYLVVNAGGPINKGLSSAISKSVCETRITSAMITITSLAVTIKTEDTVVVGLKSTIAQVMSVELKGKSYTIIVTASSAECTLVATASIAYFYKGRATLVITQMAQMLRFLRAADENLGKMLIIQGSGSLKDV
Gracilar00     ITLQVGIKIYLEQVMTLIQNVIANENDVVLMGQGIRILQSANAGKVAQIPSGDDYLVVSAGGPINKGLSPAISKSVCETQITSAMITITSLAVTIRTEDTIVVGLKSTVAQVMSVELKGKSYTIIVSASNAECTLVSSACIAYFYKGKATLVITQMAQMLRYLRAADENLGKMLIIQGSGSLKDV
Grateloupi     ITLQVGIKIYLEQVMALIQNVIANENDVVLMGEGIRILQSANAGKIAHVSSGDDYLIVNAGAPINNGLSSAISKSVCESRITSAMITITSLAVTIRTEDTVVVGLKSTVAQVVSVELKGKSYTIIVTASSADSTLIATASIAYFYNGKATLVITQMAQMLRYLRAANQKLGKMLIIQSSGSLRNV
Guillardia     VTLQVGIKVYLQQVMALIQNIIANGNEVVLMGTSIRLLQSSKAGKIAQIPTGQAYLIVSPGNPIGKGIGTAISQSVCESRITSAMIIITSLAVTIKTEDTIVVGIKSTVSQVVSVEIKGQSNTIIVAACSARSTLIASASIAYFYQGKATLVITQTAQMLRYLKAANENLGKMLIIQSSGALRDV
Hemiselmis     LTLQVGIKVYLQQVMALIPNIIANGNEVVLMGTGFRILQSSKAGKIAQIDTGEDYLIISAGGPIGKGIGTAISQSVCESRITSAMITITALAVTIKTEDTVVVGIKSTVAQIVTVQIKGQSNTCLVAACSADSTLIASACIAYFYRGKATLVITQSAQMLRYLRAANEKLGKMLIIQSSGSLRDV
Heterosigm     LTLQAGIKIYLEQVMALLEEVIANENDVVLMGTGLKILESTRSGKIAQINTGEEYLVVDSGKPIGKGLSMAIARSVCETQITSAMIQITSTAVTIPPEDVVVIGVKSTVAQAVSVERKGQSYMIIVTASSADPTLIATAALAYFYTGKATLVISEMAQMLRFLKAADETLGKMLIIQGSSSIRYV
Ishige_oka     VTLQVGIKLYLDQVMAILEEVIANENDVVIMGQGIKLLESSKADRIALIQTGDGYLIVDAGKPIGKGLSMAIARSVCENQITSAMIQITSTAVTIAVDDVIVVGIKSTVAQVIQINRRGQPYTIIVTASSAPPTLIATASLAYFYTGKATIIVSETAQMLRYLRAADKKLGKMLIIQASGSIRNV
Isochrysis     ISLQKGINVYLEQVMALIQEIVANENQVVLMGTGLRLLQSSKAGKIAQVPTGNAYLVVNGGGPIGKGIGGAISKSVCEPRITSSMITITSMALTIKEEDVVVVGIKSTVAEIVTVELKGKPYTIIVAASSADSTLIATTCVAYFYKGRATLVINQMAQMLRYLRAADSALNKMLIIQGNGSLLNV
Isochrys00     ISLQKGINVYLEEVMALIQEIVANENRVVLMGTGLRLLQSSKAGKIAQVPTGNAYLVVNGGGPIGKGIGGAISKSVCEPRITSSMITITSMAITIKTENVVVVGIKSTVAEIVTVELKGKPYTIIVAASSADSTLISTTCVAYFYKGRATLIINQMAQMLRYLRAADSALNKMLIIQGNGSLLNV
Karlodiniu     PSLQQGLTVFLEVAAALLSEIIARKNIVVIMGTAIQIAQQIVAAKVAHIPTKDAYKVVNPGVIIGLGIPMVINKSVAEKQITSAMITITALALTIKTEDVVVIAIKSTVSEKVTMQLKDTVYCIIVGAMNLAPSLIATTCIAFFNKGKATIVVTQVADLLRFLKVPSSELQQMLAIQGKGFYLNV
Kryptoperi     ITLQVGIRVYLDQVMSLLEEIVANDNVVVLMGTGLQILESTKAGKIAQIPVGDEFLVVKPAAPIGKGLAMAISKSVCELQITLAMIQITSIAVTIKTENVVVVGIKSTVAQVVNVEEKNLKYTIVVSASANDPTLIAAAALAYFYKGKATLVVTQMAQMLRYLRAASDALGSMLIIQSSNSIRNV
Leptocylin     FTLQVGIRVYLDQAMSLLEEIIANDNVVVLMGEGIQLLESTKAGKIAQIPSGEDFLVVDSGAPIGKGLAMAIANSVCELQITSAMIQITSTAVTIKTEDVVVVGIKSTVAQVVNVDERGLAYTIIVTASASDATLIAAAALAYFYRGKATLIITQMAQMLRYLRAASDNLGKMLIIQSSNSIRDV
Lithodesmi     ITLQVGIRVYLDQVMSLLEEIIANDNSVVLMGQGRQLLESTKTGKIAQIPVGDEFLVVKPGTPIGKGLAMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGVKSTVAQLVNVEEKGLSYTIIVTASANDPTLVAAAALAYFYKGKATLVITQMAQMLRYLRAANDTLGSMLIIQGSNSIRNV
Mallomonas     ITIQLGLKVYLEQVMALIEEIIANETDALLMGSSIQLSESSRAGKIAQLTIGDAYPTVDSRSPIGKGLGNAIGKSVCEHQITSAMIQITSTAVTIRQEDVVVVGIKSTVAQAVGIENKGQSYTIIVTASSGASTLIATTAIAYFYKGKATLIITELAEMLRYLRAAGADLGKMLVIQQSGAIRNV
Nannochlor     ITLQVGIKVYLADAMMLIEELISNENDVVLMGTGFALDEGCKAGKVAQVMTPERTLLVNTGFPIEQGIPMAISKSVCEDQITSAMIQITSTALNIATEDVVVVGIKSTVAQAVASEKMGQEYTIIVTASAADSTLVATAALANFYKGRATLLITAMARMLRYLKAADPDMDKMLIIQGSGSIRNI
Nannochl00     ITLQVGIKVYLADAMMLIEELISNENDVVLMGTSFELDEGCRAGKVAQVMTPERTLLVNTGFPIEQGIPMAISKSVCEDQITSAMIQITSTALNIATEGVVVVGIKSTVAQAVASEKMGQEYTIIVTASAADSTLVATAALANFYKGRATLLITAMARMLRYLRAADPDMDKMLIIQGSGSIRNI

test/ppred-30.phy  view on Meta::CPAN

79	185
Amphiprora     QTLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGRQILESTKAGRIAQIPVGEAFCVVNPGMPIGKGIAMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGVKSTVAQVVNVEEKNMSYTIIVSASANDPTLIAAAALAYFYKGKATLVITQMAQMLRYLRAASGSLGSMLIIQSSNSIRNV
Asterionel     QSLQVGIRVYLDQVMSLLEEIIANDNVVVLMGSGRQILESTKAGRIAQINVGEAYLVVNPAVPIGKGLATAISKSVCELQITSAMIQITSIAVTIKNENVVVIGIKSTVAQVVNVEEKNMSYTIIVSATANDPTLIAAAALAYFYNGKATLVVTQMAQMLRYLRAASDALGSMLIIQSSNSIRKV
Asterion00     QTLQVGIRVYLEQVMSLLETIIANDNVVVLMGTGRQISESTTAGRIAQITVGEAFMVVNPGVPIGKGLAKAISKSVCELQITSAMIQITSIAVTIKTEDVVVVGIKSTVAQVVNMQEKNLSYTIIVSASANDPTLIATAALAYFYKGKATLVITQMAQMLRYLRAASDVLGSMLIIQSSNSLRKV
Aureococcu     QILQVGIRVYLDQVMILVELVIANDNVVVLMGSSRQQLESSKSGKIAQIPVGSSFLIVCAASPIGKGISMAISQSVCETQITAAMIEITSIAITIKTEDVVVIGIKSTVAQIVTVDEKGLSYTTIVAAIADEPTLIASAALAYFYNGKATLVITQIANMQRYLRAASSVLGTMIIIQSSNSVRKV
Aureoumbra     QILQVGIRVYLDQVMILVEIIIANDNTVVLMGSSRQQLESSKSGKIAQIPAGSEFLIVCAANPIGKGISMAISQSVCELQIVAAMIEITSIAVTIKTEDVVVIGIKSTIAQVVKVYEKGLDYTTIVSAVANEPTLIAAAALAYFYKGKATLVVTQTANMQRYLRAANSVLGTILIIQSSNAARKV
Calliarthr     KVLQVGIRVYMDDVMNLIQIIVANDNTVVLMGDGKKITDSSKSGKIAQLPVGDNYLVVCAGAPIGNGIGMAISKSVCESHITASMIQITATAITVKRDDIVVIGIASTVAEVVKSTERDLPYTVIVAASANDSTLIASAAIAYFYKGKATLDITQAAQMQKYLRAASPDLGTMLIIQSSNSIQKV
Chattonell     QILQIGIRVYLDQVMVLVETVIANDNTVVLMGAGRQLLEATKSGKIAQINVGQSFLVVCAGSPIGKGIGMAISKSVCESQITASIIQITSIALTIKSEDVVVIAIKSTVAQVAKTSEKGLSYTIIVSASANESTLIASASLAYFYEGKATLIVTQVAQMQRYLRAVSKSLGTMLIIQSSNSIRKV
Chondrus_c     QVLQVGIRVYMDDVMNLLQIIVANDNTVVLMGTGKRITDSAKSGRIAQLSVGENYLVVCAGAPVGNGISMAISKSVCESHITAAMIQITATAITVRRDDVIIIGIKSTVAEVVKATEKNLSYTVIVAASANDPTLIASAALAYFYKGKATLDITQSAQMQKYLRAASPALGTMLVIQSSNAIQKV
Chroomonas     QILQVGIRVFLNQVMALVEIIIAGDNTVVLLGAGCQILESTKGGRIAQLPVPDNYLVVCAAAPIGKGIGMVISKSVCESHITAAMIQIAATAVTVRSEDVIVIGIKSTVAQIVKYELEGFSYTCIVTGSADDPTLIASAAWAHFYKGKATLDVTQSAQMQRYLRAANAVLGTMLIIQSSNSIQKV
Chrysochro     QFLQVAIRVYLNQVMAVIEIIIANDNTVVLIGSGFEIMEATKAGKIATLPVGPTYLIVCAGRSIGKGVGMAIAKSVCESHITAAMIQITSTAITVKTEDVIVIGIKSSLAAVVKVEEDGLEYTTIVSATSDDPTLIATASLAYFYRGKATLDITQSAQMQRYLRASSDELNTCLLVQSSNAIQKV
Chrysophyc     LTLQVGIRVYLDKVMILVETIIPEDNVVVRMGTGRQIFEAVRSGIIAQVNTPDMCMIVCAGTCIDKGIGMAITKSVCESQITASVIQITAIGCTIKGEDVVVIGVKSTVAEVVKVEERGLPYTIIVAATADEPTLIASAALAYFYKGQATLIITQVANLQKYLRAASDSLGVMLIVQSSASIRKV
Compsopogo     QILQVGIRVYLDQVMNLIEIMIANDNKIVLMGAGLRITESTKSGLIAQTPVGSGYLVVCPAVPIGKGIGMAISKSVCESHITAAMVQITATAITVKTEDVVVIGIKSTVAEVAKVSEKGLSYTTIVAANANDPTLIAPAALAYFYKGKGTLDITQAAQMQRYLRAANGNLGTDLIIQSGNSIQKV
Coscinodis     KTLQVGIRVYLDQVMSLLEKIIANDNVVVLLGSGRQILESTKAGRIAQIPVADAFLVINAGMPIGKGLAMAISKSVCELQITSAMIQITSIAVTVKAEDVIVVGIKSTVAQVVKVEEKGMAYTIVVSASANDPTLIASAALAYFYKGKATLVITQMLQMLRYLRAASDSLGSMLIIQSSNAIRKV
Cryptomona     QILQVGIRVFLDQVMALVEIIIAGDNTVVLLGTGCQILESTKAGRIAQLPVKDSYLVVCAATPIGKGVGMAITKSVCESHITAAMIQITATAVTVRTEDVVVIGIKSTVAQVVKYDEDTLSYTCIVTASASDSTLIASAAWAYFYKGKATLDITQSAQMQRYLRAANAVLGTMLIIQSSNAVQKV

test/ppred-30.phy  view on Meta::CPAN

Cryptophyc     QILQVGIRVFLDQVMALLEIIIAGDNTVVLLGTGCQILESAKSGKIAQLPVKSSYLVVCAASPISKGVAMAIAKSVCESHITAAMIQITATAVTVRTEDVVVIGIKSTVAQIVKYDEDGLGYTCIVTASASDPTLIASAAWAHFYNGIATLDITQSAQMQRYLRAANDALGTMLIIQSSTAIQKV
Cylindroth     QTLQVGIRVYLDQVMALLEDIIANDNVVVLMGTGRQILESTKAGRIAQIPVCDAFLVVNPGTPIGKGLSMAISKSVCELQITSAMIQITSIAITIKTENVVVVGVKSTIAQVVNVEEKNMPYTIIVSASANDPILIAAAALAYFYKGKATLVVTQMAQMLRYLRAASGALGSMLIIQSSNSIRNV
Desmaresti     LILQVAIRVYLDQAMVLVEIIIANDNVVVLMNSGRQILESTKNGRIAQVPVGTDAHIVCPASPIGKGVGMAISKSVCESQITAAIIQLTSIAITVKTENVIVIGIKSTVAQIIKVEEKGMTYTTIVAASSNEPTLIASAALAYFFNGKATLVITQIAQAQRYLRAASAVLGTLLIIQSSNAIRKV
Dictyocha_     QILQIGIRVYLDQVMILVEIIIANDNTVVLMGSGKNILEKSSSGKIAMIPVPTAFLIVCAATPIGKGVGMAITKSVTESQITAAMIQITSIAITIKTSDVVVIGIKSTTAQVVKLEEKGLSYTVIVCASANDPTLIASSAIAYFYRGKATLIITQIAQMQRYLRAASGVLGTMLIINSSKSIRKV
Dictyopter     LLLQVAIRVYLDQAMVLLEILIATDNVVVLMNNGLQILESTKNGRIAQIPVGTTANVVCPGNPIGKGLATAIGKSVCEQQITASVVQLTSIAVTVRGEDVVVIGIKSTVAQIIKVEETGLAYTTIVASASNDPTLIASAAIAYFFLGKATLVVTQIAQGQRYLRAASSILGTLLIVQSSNAIRKV
Didymosphe     MTLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGRQILESTKAGRIAQIPVGEAFCVVNPGIPIGKGIAIAISKSVCELQITSAMIQITSIAVTIKTEDVVIVGVKSTVAQVVNVEEKQLSYTIIVSAAANDPTLIAAAALAYFYQGKSTLVVTQMAQMLRYLRAASDVLGSMLIIQSSNSIRNV
Durinskia_     QTLQVGIRVYLDQVMALLEDIIANDNVVVLMGTGRQILESTKAGRIAQIPVGESFLVVNPGVPIGKGLSMAISKSVCELQITSAMIQITSIAVTIKTEDVVVVGIKSTVAQVVNVEEKNMSYTIVVSASADDPTLIAAAAIAYFYKGKATLVITQMAQMLRYLRAASGSLGSMLIIQSSNSIRNV
Ectocarpus     LILQIVIRVYLDQAMVLIEIIIANDNVVVLMNSGRQILESTKNGGIAQIPVGTEAHIICPGAPIGKGVGMAISKSVCESQLTASIIQLTAIAITVKTENVVVIGIKSAVAQIIKVEDTGLSYTCIVAASSNDPTLIASAALAYFFLGKATLVITQVAQAQRYLRAASASLGTLLIIQSSNAIRKV
Emiliania_     QFLQVAIRVYLNQVMAVIEIIIANDNTAVLIGTGIDILEATRSGRIAQLPVGDAYLVVCAGKTIGKGIAMTIAKSVCESHITAAMIQITSTAITVRNDDVIVIGIKSSVASVVKVEEEGLEYTCIVSASADDPTLIAAATIASFYKGKATLDVTQAAQMQRYLRAASDVLGTCLLIQSSNSIQKV
Eunotia_sp     QTLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGRQILETTKAGIIAQIPVGENFLIVNPGVPIGKGLAMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGVKSTVASVVGVEEKGLAYTIVVCAVANDPTLIAAAALAYFYKGKATLVITQIAQMLRYLRAASDALGSMLVIQSSNSIRKV
Eustigmato     VILQIGIRLYLEEVMALLEIIVPTDNVVVLLGSGFNIDESTKAGGIAQIDAPSAYIIVTSAEPIGQGISMAIEQSVCETQITAATIQITSIAITIKREDVVLVGIKSTVAGIVKIIEKGLSYTIVVSASSDEPTLIAHEAIAYFYNGRATLVITQMAQMQRYLRAANSELNTMLILQSSDSVRKV
Extubocell     QTLQVGIRVYLDQVMSLLETIIANDNVVVLIGTGRQILESTTAGRIAQIPVGDAFLIVNPGVPIGKGLAMAISKSVCELQITSAMIQITSIAVTIKSEDVVVVGIKSTVAQVVKIEEKGMAYTIVVSASANDPTLIAAAALAYFYNGRATLVITQMAQMLRYLRAASDALGSMLIIQSSNAIRKV
Fistulifer     QTLQVGIRVYLDQVMALVEEIIANDNVVVLMGTGRQILESSKAGRIAQIPAGDAFCVVNPGIPIAKGIAMAISKSVCELQITSAMIQITSIAVTIKTEDVVVVGVKSTVAQVVTVEEKNMSYTIIVAASAKDPTLIAAAALAYFYKGKATLVVTQMAQMLRYLRAASDALGSMLIIQSSNSIRNV
Fucus_vesi     LILQVAIRVYLNQAMVLVEIIIANDNVVVLMNAGRQIFESTKNGGIAQINVGTDAHIICPGAPIAKGIGMAIAKSVCESQITAAIIQLTSIAITVKTENVIVIGIKSTVAQIIKVEETGLTYTTIVAASSNDPTLIATAALAYFFLGKATLVITQIAQAQRYLRAASAVLGTMLVIQSSNSIRKV
Geminigera     QILQVGIRVFLDQVMALVEKIIAGDNTVVLLGTGCQIFESAKSGRIAQLPVKDEYLVVCAASPISKGISMAIAKSVCESHITSAMIQITATAVTVRTEDVVVIAIKSTVAQVVKYDEDGLAYTCIVTASASDPTLIASAAWAHDYKGKATLDVTQAAQMQRYLRAANDALGTMLIIQSSTAIQKV
Gracilaria     QVLQVGIRVYMDDVMNLLQLIVANDNTVVLMGNGKRITDSATSGKIAQLPVGDAYLVVCAAAPIGNGIGMAISKSVCESHITASMIQITATAITVRRDDVIVIGIKSTVAEVVTATEKDLSYTVIVQASSNDPTLIATAALAYFYKGKATLDVTQSAQMQKYLRAASSDLGTMLVVQSSSSIQKV
Gracilar00     QVLQVGIRVYMDDVMNLLQLIVANDNTVVMMGNGKRITDSATAGKIAQLPVGDAYLVVCAAAPIGNGIGMAISKSVCESHITASMIQITATAITVRRDDVIVIGIKSTTAEVVTATEKDLSYTVIVQASANDPTLIATAALAHFYKGKATLDITQSAQMQKYLRAASPDLGTMLVVQSASAIQKV
Grateloupi     QVLQVGIRVYMDDVMNLLQIIIANDNTVVLMGNGKRITDSATAGRIAQLPVGENYLVVCVGAPIGNGIGMAISKSVCESHLTAAMIQITATAITVRKEDVIVIGIKSTTAEVVKATEKDLSYTVIVAASADDPTLIAAAALAYFYKGRATLDITQVAQMQKYLRAASPNLGTMLIIQSSNAIQKV
Guillardia     QILQVGLRVFLDQVMALVEIIIAGDNTVVLLGTGCQIFESAKSGRIAQLPVKDDYLVVCAASPIAKGIAMAIAKSVCESHITAAMIQITATAITVRTEDVVVIGVKSTVAQVVKYDEDGLAYTCIVTASASDPTLIASAAWAHDYKGKATLDVTQVAQMQRYLRAANDALGTMLIIQSSTAIQKV
Hemiselmis     QILQVGIRVFLDQVMALVEIIIAGDNTVVLLGTGCQILESTKGGRIAQLPVPESYLVVCAASPIGKGIGMAISKSVCESHITAAMIQITATAVTVKTEDVVVIGIKSTVAQIVKYEEEGFSYTCIVTGSADNPTLIASAAWAHFYNGKATLDVTQSAQMQRYLRAANAVLGTMLIIQSSNSIQKV
Heterosigm     QILQIGIRVYLDQVMVLLEKVIANDNTVVLLGTGRQLLESSKAGRIAQINVGNGFLVVCAAAPIGKGIGMAINKSVCESQITASIIQITSIALTIKTEDVVVIAIKSTVAQVVSTSEKGLAYTIIVAASANEPTLIASAALAYFYESRATLIITQVAQMQRYLRAVSKNLGTMLVIQSSNSIRKV
Ishige_oka     LILQVAIRVYLDRAMVIVEIIIANDNVVVLMNEGGQILESTKNGRIAQIPVGSDAHVVCPGNPIGKGVGMAIAKSVCESQITAAIIQLTSIALTVRTEDVIVIGIKSTVAQIIKVEEKGLDYTTIVAAASNDPTLIASAALAYFFLGKATLVVTQIAQAQRYLRAASSALGTLLIIQSSNSIRKV
Isochrysis     QFLQVAIRVYLNQVMAVLEIIILNDNTVVLIGTGIDILEATRSGRIAQLPVGDAYLVVCAGKAIGKGISMTIAKSVCESHITAAMIQITSTAITVKNEDVIVIGIKSSVASVVKVEEDGLDYTCIVSSSADDPTLIAAASLASFYKGKATLDVTQSAQMQRYLRAASDSLGTCLLIQSSNSIQKV
Isochrys00     QFLQVAIRVYLNQVMAVLEIIIANDNVVVLIGTGVDILEATRSGRIAQLPVGDAYLVVCAGKAIGKGISMTIAKSVCESHITAAMIQITSTAITVRNEDVIVIGIKSSVASVVKVEEEGLDYTCIVSSSADDPTLIAAASLASFYKGKATLDVTQSAQMQRYLRAASDALGTCLLIQSSNSIQKV
Karlodiniu     FGLQVGIRVYLKEASIVLQNVIANDNVALIVGTGLYIIESAIGTKICGVNVPDNFKIVNPSRPIKKGFMGAITQSACEARIVSAIVQITATALTIKNKDHVVVGIKSSVASVATKIEKGLKCTCVVFAVSTIPILIATSSIAFFYVFRATLKVTQSLNLKRYLKANNKKLGSRLIVQGGGFVKSI
Kryptoperi     QTLQVGIRVYLDQVMALLEDIIANDNVVVLMGTGRQILESTKAGRIAQIPVGESFLVVNPGIPIGKGLAMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGIKSTVAQVVNVEEKNMSYTIVVSASANDPTLIAAAALAYFYKGKATLVITQMAQMLRYLRAASGSLGSMLIIQSSNSIRNV
Leptocylin     QTLQVGIRVYLDQVMALLETIIANDNVVVLMGTGRQILESTKSGRIAQIPVADSFLVVSAGIPIGKGLSMAISKSVCELQITSAMIQITSIAITIKKDNVVVVGIKSTVAQVVKIEEKGLSYTMVVSASANDPTLIASAAVAYFYKGRATLVVTQMAQMLRYLRAASDSLESMLIIQSSNSIRKV
Lithodesmi     QTLQVGIRVYLDQVMSLLETIIANDNVVVLMGTGRQILESTKAGRIAQIPVGEAYLVVNPAVPIGKGLAMAISKSVCELQITSAMIQITSIAVTIKTEDVVVVGIKSTVAQVVKVEEKGMSYTIIVSASANDPTLIAAAALAYFYNGRAILVITQMAQMLRYLRAASDALGSMLIIQSSNSIRKV
Mallomonas     VTLQIGIRVYLDKVMILLETIIPEDNVVVRMGTGRQILETVRAGIIAQVEVPDMYMIVCAGMPLDKGVSMAITKSVCESQITASVIQITAIGCTIKGEDVVVIGIKSTVAEVVKVEERGLSYTIIVTATADEPTLIASAALAYFYRGKATLIVTQVANLQKYLRAASDSLGVMLVVQSSGSIRKV
Nannochlor     VILQVGIRLYLDEVMALLEIIVPTDNVVVLLGSGRSIDESSKSGGIAQINAPTSFMIVTSAEPIGKGISMAIEQSVCETQITAAVIQITSIAITIKKENVVVVGIKSTVASIVKMIEKGLPYTIIVSASSDQPTLIAHEAIAYFYNGKATLVITQIAQMQRYLRAASSNLNTMLILQSSNSVRKV
Nannochl00     VILQVGIRLYLDEVMALLEIIVPTDNVVVLLGSGRSIDESSKSGGIAQINAPTSFMIVTSAEPIGKGISMAIEQSVCETQITAAVIQITSIAITIKKENVVVVGIKSTVASIVKMIEKGLPYTIIVAASSDQPTLIAHEAIAYFYNGKATLVITQIAQMQRYLRAASSNLNTMLILQSSNSVRKV
Ochromonas     LTLQIGIRVYLDKVMILVETIIPEDNVVVRMGTGRQIFETVRSGIIAQVETPDMYMIVCAGIPIDKGIGMAITKSVCESQITAAVIQITAIGCTVKGEEVVVIGIKSTVAEVVKVEERGLPYTIIVAATADEPTLIASAALAYFYKGKATLIITQVANLQKYLRAASDALGVMLVVQSSASIRKV
Odontella_     QTLQIGIRVYLDQVMSLLETIIASDNVVVLMGTGRQILESTTAGRIAQIPVGDAFLVVNPGAPIGKGLAMAISKSVCELQITSAMIQITSIAITIKSEDVVVVGVKSTVAQVVKVEEKGMAYTIVVSASANDPTLIAAAALAYFYGGRATLVITQMAQMLRYLRAASDTLGSMLIIQSSNSIRKV
Pavlova_lu     QILQVGIRVYLDQVMALLEIVIADDNTVVLVGAGRQILESANSGKIAQLPVGEKCLIVCAARPIGNGVSMAISKSVCELHITSAMIQITSTAITVRKEDVVLIGIKSTVPQVVKTEEKGLFYTNIVAASANDPTLIASSSLAYFYKGRATLNITQTAQMQRYLRLASPVLCTILIIQSSNSIQKL
Pavlova_00     QILQIGIRVYLDQVMALLEIIIADDNTVVLVGTGRQILESANSGRIAQLPVGDECLIVCAARPIGKGISIAISKSVCELHLTAAMIQITSTAITVRKEDVVIIGVKSTVAQVVKTEEEGLFYTNIVTASANDPTLIAASSLAYFYNGRATLNITQTAQMQRYLRLASPVLCTILIIQSSNSIQKL
Pavlovales     QILQVGIKVYLDQVMALLEIVIADDNTVILVGAGLQILESANSGKIAQLPVGDKCLIVCAAQPIGNGVSIAISKSVCELHLTAAMIQITSTAITVRKEDVVLIGVKSTVPQVVKTEEKGLFYTNIVAASANDPTLIASSSLAYFYKGRATLNITQTAQMQRYLRLASPVLCTILIIQSSNSIQKL
Pedinellal     QILQVGIRVYLDQVMILVLIIIANDNTVVLMGSGRQILESSTSGKIAQIPVPKAFLIVCAAIPVGKGIGMAITQSVCESQITASMIQITSIAITIKTSDVVLIGIKSSVAAVVKVEEKNMAYTVIVAASANDPTLIASSALAYFYRGKATLIITQIAQMQRYLRAASGVLGTMLIIQSSKSIRKV
Pelagophyc     QILQVSIRVYLDQVMILVEKIIASDNVVVLLGSSRQQLQSVISGKIAQIPVGSAYLIVCAINPIGKGISLAISQSVCETQITAAMIEITSIAVTIKTEDVVVIGVKSTVAQVVKVKEKGLPYTTIVAAIADEPTLIAPASLAYFYKGKATLVVTQIANMQRYLRAASSVLGTMLIIQSSNSVRKV
Phaeocysti     QFLQIGIRVYLDQVMAVVEIIIANDNTVVLIGAGLEILESTKSGKIAQLPVGDNYLIVCAGRSIGKGVGMAIAKSVCESHITAAMIQITSTALSVRNEEVIVIGVKSSVASVVKIEEEGLAYTCIVAATADDPTLIATASIAYFYRGKGTLDVTQSAQMQRYLRAASDALGTCLIIQSSNAIQKV
Phaeocys00     QFLQIGIRVYLDQVMAVVEIIIANDNTVVLIGAGLEILESTKSGKIAQLPVGENYLIVCAGRSIGKGVGMAIAKSVCESHITAAMIQITSTALSVRNEEVIVIGVKSSVASVVKIEEEGLAYTCIVAATADDPTLIATASIAYFYRGKGTLDITQSAQMQRYLRAASDALGTCLIIQSSNAIQKV
Phaeodacty     QTLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGRQILESTTAGRIAQIPVGDAFCVVNPGIPIAKGVAMAISKSVCELQITSAMIQITSIAVTIKTENVVVVGVKSTVAQVVNVEEKGMSYTIIVTASANDPTLIAAAALAYFYRGKATLVITQMAQMLRYLRAASDDLGSMLIIQSSNSIRNV
Phaeomonas     QILQVGIRVYLDAAMVLVEIIIADANTVVLMGSGRRIIEATKNGKIAQIPTGEEFLVVCAAVPIGKGISMAISKSVCESQITASIVQITAIDVTIKEQDVVVIGIKSSVSQVVKVQEKNLSYTIIVAASANEPTLIATAALAYFYRGKATLVITQVAQMQRYLRAASSALGTMLIVQSGNTIRKV
Pleurochry     QFLQVAIRVYLEQVMAVVEIIIANDNTVVLIGNGLEILEATRSGKIAQLPVGNAYLVVCAGRSIGKGISMAIAKSVCESHITAAMIQITATAITVRNEDVIVIGIKSSVAAVVKVDEDGLDYTCIVSATADDPTLIATASLASFYKGKATLDVTQSAQMQRYLRAASDALGTCLLIQSSNSIQIV
Porphyra_p     QILQVGIRVYMDEAMNLVEIIVANDNTVVLMGNGKRITDSAKSGRIAQLNVGDQYLVVCAASPIGNGIGNAIAKSVCESHITSAMIQITATAITVKSDDVIVIGIKSTVAEVVKIEDKGLSYTIIVAASANDPTLIASAALAFFYKGKATLDITQSAQMQKYLRAASATLGTMLIIQSSNAIQKV
Porphyra00     QILQVGIRVYMDEAMNLVEIIVANDNTVVLMGNGKRITDAAKSGRIAQLNVGDQYLVVCAASPIGNGIGNAIAKSVCESHITSAMIQITATAITVKSDDVIVIGIKSTVAEVVKIEDKGLSYTIIVAASANDPTLIASAALAFFYKGKATLDITQSAQMQKYLRAASATLGTMLIIQSSNAIQKV
Porphyridi     QELQIGIRVYLDQVMNLNEIIIANDNKIVLMGIGLRITESAKSERIAQIPVSNNYLVVCAGEPIGQGIGMAISKSVCESHITAAMIQITATAITVKSDDVVVIGIKSSVAEIVKVEEKGLLYTIIVAHSADDPTLIATIALAYFSHGRATLDVTQNAQMQRYLRAASSSLNTMLIIQSSGAIQKV
Proteomona     NVLQVGIRVFLDQVMALVEIIIAGDNTVVLMGAGFQILESTKSGRIAQLPVKDQYLVVCAASPIGKGISMAISQSVCESHITASMIEITATAVTVRTEDVIVIGIKSTVAEIVKYDEDGLTYTCVVTASASDPTLIAGTALAHFYKGKATLDVTQSAQMQRYLRAANAALGTMLIIQSSTAIQKV
Prymnesium     QFLQVAIRVYLNQVMAVIEIIIANDNTVVLIGTGFEIMESTKAGKIAQLPVGSTYLIVCAGRPIGKGVGMAIAKSVCESHITAAMIQITSTAITVKTEDVIVIGIKSSVASVVKVEEEGLDYTTIVSATADDPTLIATASLAYFYRGKATLDVTQSAQMQRYLRASSDALNTLLLIQSSNSIQKV

test/ppred-30.phy  view on Meta::CPAN

Rhodella_m     YILQVGIRVYLDQVMNLLKIIIASDNVVVLMGTGKRITESARSGKIAQLPVGNEYLVICAGVPIGNGISMAIAKSVCESHITAAMIQITATAITVKSENVIIIGIKSTVAEVVKVEEKGLSYTIIVAASANSATLIATAALAYFYKGKATLDVTQAAQMQKYLRAANPVLGTMLIIQSSNAIQKV
Rhodomonas     NVLQVGIRVFLDQVMALVEIIIAGDNTVVLLGAGFQILESTKSGRIAQIPVKDHYLVVCAASPIGKGVSMAIAKSVCESHITAATIQITATAVTVRTEDVIVIGIKSTVAQVVKYDEDGLSYTCVVTASASDPTLIASTALAHFYKGKATLDVTQAAQMQRYLRAANAVLGTLLIIQSSTSIQKV
Saccharina     LILQVAIRVYLDQAMVLVEIIIANDNVVVLMGSGRQILESTKNGGIAQIPVGTDAHIICPGSPIGKGIGMAISKSVCESQITAAIIQLTSIAITVKTENVIVIGIKSTVAQIIKVEETGLTYTCIVAASSNDPTLIASAALAYFFLGKATLVITQVAQAQRYLRAASSVLGTLLIIQSSNSIRKV
Sargassum_     LILQVAIRIYLNQAMVLVEIIIANDNVVVLMNAGRQILESTKSGGIAQINVGTEANIICPGAPIGKGVAAAIAKSVCESQITSAIIQLTSIAITVKTENVIVIGIKSTVAQIIKVEETGLTYTTIVAASSNDPTLIASAALAYFFLGKATLVITAIAQAQRYLRAASAVLGTLLIIQSSNSIRKV
Stylonema_     QILQIGIRIYLDQVMNLVEIIIANDNKIVLLGSGRRITEGARSGRIAQQPVGDNYLITCAATPIDNGVSMAIGKSVCESHIVASMIQITATAITVKTEDVIVIGIKSTVAEVVSVEDKGLDYTIIVAAAASDPTLIASAALAYFYQGKATLDITQSAQMQKYLRAASSKLGSMLIIQSSNAIQKV
Synchroma_     LILQVGIRVYLEQAMALLEIIIPENNVVVLLGTGKNILETDKSGKIAQIPVGSQYMIVCSAIPISKGISMIITKSVCESQITAAIVQITAIAVTIKSEDVVVVAIKSTVAEIVPIDDKSLGYTYIVAASANDPTLIATAAVSYFYKGKATLVITQVAQLQKYLRAVSPKLGSMLIVQSSNSIRKV
Synedra_ac     QTLQVGIRVYLDQVMSLLEEIIAADNVVVLMGTGCQILESSQAGRIAQIPVGEAFLVVNAGVPIGEGLATAISKSVCELQITSSMIQITSIALTIRTEDVVVVGIKSTVAQVVNVEEKNMLYTIIVSSGANDPTLIAAAALAYFYKGKATLVVTQMAQMLRYLRAASDALGSMLIIQSSNSIRKV
Synura_spe     LTLQIGIRVYLDKVMILIETIIPEDNVVVRMATGRQIFETVRAGIIAQVETPEMYMIVCAAMPIDKGISMAITKSVCESQITASVIQITAIGCTIQGEDVVVIGIKSTVAEVVKVEERGLSYTIIVAATADEPTLIASAALAYFYRGKATLIITQIANLQKYLRAASDTLGVMLIVESSASIRKV
Thalassios     QTLQVGIRVYLDQVMSLLETVIANDNIVVLMGTGRQVLESTKAGRIAQIQAGDAFLVVNPAIPIGKGLSMAISKSVCELQITSAMVQITSIAVTIKSEDVVVVGIKSTIAQVVKVQEKGLTYTIIVSANANDPTLIAAASLAYFYNGRATLVITQLAQMLRYLRAASDALGSMLIIQSSDSIRKV
Thalassi00     KTLQVGIRLYLDQVMSLLETVIANDNVVVLMSTGRQILESTKAGRIAQIPAGDSFLVVNPAIPIGKGLAMAISKSVCELQITSAMVQITSIAITIKKEDVVVVGIKSTIAQVVKVEEKGLSYTIIVSASANDPTLIAAASLAYFYKGKATLVVTQMAQMLRYLRAASDALGSMLIIQSSDSIRKV
Uncultured     DILQVGIRVYLDQVMILVEIVIANDNIVVLMGSSRQQLESSKSGKIAQIPVGSNFGIVCAANPIGKGISMAISQSVCETQITAAMIEITSIAITIKTEDVVVIGIKSTVAQIVTVDEKGLAYTTIVAAIADEPTLIASAALAYFYGGKATLVVTQIANMQRYLRAASSVLGTMIIIQSSNSISKV
Uncultur00     QFLQVAIRVYLNQVMAVLEILIANDNTVVLIGTGFEILEATKAGRIAQLAVGDTYLIVVNGRPIGKGVGMAIAKSVCESHITAAMIQITSTAITVKNEDVIVIGIKSSVASVVKVEEEGLEYTCIVSAIADDPTLIATASLAYFYNGKATIDITQSAQMQRYLRASSDALGTCLLIQSSNAIQKV
Vaucheria_     QILQVGIRVYLDQAMVLVEIVIANDNTVVLMGTGRQILEAAKSGRIAQVAAGSAAHVVFAGAPLGKGIAMAISKSVCESQITAAIIQLTSIAVTIRNENVIVVGIKSTVAQIVKVEEKGLDYTTIVAASANDPTLIASAALAYFFNGKATLVITQIAQMQRYLRAASSNLGTMLIIQSSNSVRKV

test/ppred-43.phy  view on Meta::CPAN

Chrysochro     ITLQAGIRVYLNEVMSLLEDVIAKDHIAVLMGVKFNILESTVAGKISQIPVADAYLVMDAADPIGKGISGAIATSVAELQITSAMIHITSIAITARAENCVVVGVKSTIAEVVSVAEKGLDYTVIVASTANDPALIAGACVAYFYKGQATLVITQLAQLLRFLRAASSDLGSMLIIQSSDSIRNV
Chrysophyc     LTLQVGLRLYLETVMALLEKVVAFDYVAVLMGSKINILEGPVAGRVAQIGVGDAYLVMHAGDPIGKNISYAIGKTVCELQITSALIQITAIAVTQSTDDVIVVGIKSNVAQIVTIKEKRLIYTVIVTASANIPALISGASLAYFYNGKATLIVTQLLQMLRYLRAASNDFSSMLVIESSDAIRNV
Compsopogo     FTLQAGIQVYLDEVVALKDQVIAKSYIAVLMGQKLKILETTVAGKVAQLPVGDAYLVMNPAVPIGKGIAMAISTSVCELQITSAMIHITSIAITAKTEDCVVVGIKSTVAEVVNISDNDLSYTVIVAAAANQPPLIAGASIAYFYRGQATLIITQLAQMLRSLRAASDDLGSMLIIQSSDSIRNV
Coscinodis     FTLQVGIRVYLDQVMSLLEEVIANDHVVVLMGTGRQILESTIAGKIAQIPVGDEFLVVNPGAPIGKGLAMAIGKSVCELQITSAMIQITSIAITIKTEDVVVVGVKATVAQVVTVEEKNMNYTVIVAASANDPTLIAGAAFAYFYSGKATLVITQMAQMLRYLRAASSSLGSMLIIQSSNALRNV
Cryptomona     FTLQVGIRVYLDQVMALVEELIAKDYVAVLMGIKLKINEGTIAGKIAQVDVGDGLIVMDAAEPIGKGMAMAISTSVCEMQITSAMIHVTAIAITAKSENCVVIGIKATVAQIVSAIDNGMNYTVIVAASANDPTLIAGASIAYFYKGQATLVITQLAQMLRFLRAASSNLGSMLVIQSSDSIRNV
Cryptomo00     MTLQAGVRVYLDSVMALIEELVAKDRVAVLMGIQFRINEGAVTGKIAQVSVGEELLVVKAAEPIGKGMAIAIGTSVCEIQITSAMIHITAIALTANTEDCVVIGVKSTVAQVVGTTDKGLSYTVVVCASANDSTLNAGASMADFYRGQATLIVTQLAQMLRFLKAANTDLGSMLIIQSSDSIRNV
Cryptophyc     FTLQAGIRVYLDQVMSLVEELIAKDYVAVLFGIKVNIKEGTISGKIAQIDVGDSLIVMSASEPIGKGMAMAIATSVCELQITSAMIHVTAIAITAKGEDCVVIGIKATVAEVVSATDKDLNYTVIVAASANDPTLIAGASIAYFYKGQATLVITQLAQMLRFLRAASDSLGSMLIIQSSDSIRNV
Cylindroth     FTLQVGIKVYLDQVMSLLEQIIANDNVVVLLGSGRQILESTKAGKIAQIPVGDEFLVVSPGRPIGKGLAMAISKSVCELQITSAMIQITAIAVTIKTENVVVVGIKSTIAEVVNVEEKDMSYTIIVCASANDPTLIAAAALAYFYRGKATLIITQMAQMLRYLRAASDSLGSMLIIQSSNSIRNV
Desmaresti     FTLQTGIRVYLDDVMLLIEDIVAKDYVAVLLGRKIEILESTVAGKIAQIPTGQAFLVVNASIPIGKGIAMAIAKSVCEIQITSSIIQMTSIAITAKTEIVVVVGIKSTVSQVVTIKELGLIYTEIIAAAANQPTLIAGAGLAYFYKGQATLVITQLAQMLRYLRAASDDLGSMLIIQSSDSIRNV
Dictyocha_     VRLQTGIRVYLDKVMALLEDIIAKDYVVVLVGMKTKILETTISGKIAQVPVGDAYLIVDAAEPIGKGISMAITKSICELQITSSMVQITAIAITAKTEDVILVGIKSTVAEVVTVKKRGLSYTVIVTASANDFTLISGASVAYFYRGQATLVITQLAQMLRYLRAASDSLGNMLIVQSSESLRNV
Dictyopter     FSLQVGIRVYLDEVMLLLEDIVAKDYVAVLLNRKVEILESTVAGKIAQIPTGEAFLVVSAAVPIGKGIAMAIAKSVCETQITTSIIQITSIAITAKPEDVIVVGVKSTISQVVTIKELSLTYTEVIASASNQPTLIAGAGIAYFYRGQATLVITQLAQMLRYLRAASDNLGRMIIIQSSDAIRNV
Didymosphe     FTLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGRQILESIKAGRIAQIPVGEEFLVVNPCTPIGKGIAMAISKSVCELQITSAMIQITSIAVTIKTEDVVVVGVKSTVAQVVNVEEKNLTYSIIVSASANDPTLIAASALAFFYKGKATLVITQMAQMLRYLRAASDSLGSMLIIQSSNSIRNV
Durinskia_     FTLQVGIRVYLDQVMSLLEEIIANDNVVVLLGNGRQILESTKAGRIAQIPVGEEFLVVSPGSPIGKGLAMAISKSVCELQITSAMIQITAIAVTIKTENVVVVGVKSNVAEVVNVEEKNMSYTIIVSATANDSTLIAAAALAYFYKGKSTLIITQMAQMLRYLRAASDALGSMLIIQSSNSIRNV
Ectocarpus     FTLQTGIRVYLDDVMLLIEDIVAKDYVAVLLGRKIEILESTVAGKIAQIPTGQAFLVVNASIPIGKGISMAIAKSVCELQITSSIIQMTSIAITAKTENVVVVGIKSTVSQVVTVKELGLIYTEIIAAASNQPTLIAGAGIAYFYKGKASLVITQLAQMLRYLRAASDNLGSMLIIQSSDSIKNV
Emiliania_     FTIQVGIRVYLKEVMALLEDVIAKDYVVVLMGVTCNILESTVTGKIAQIPVGDNYLVMNSAEPIGKGISVAISTSVAELQISSAMIHITSIAITARTENCVVVGIKSTIAEVVSVADKGLDYTVIVTATANSPALISGACLAYFYKGQATLVVTQIAQLLRFLRSATTTLGSMLIIQSSDSIRNV
Eunotia_sp     FTLQVGIRVYLDDVMSLLEEIIANDNVVVLMGNGRKILESTIAGRIAQIPVGDEFLVVDAGAAIGKGLAMAIAKSVCELQITSAMIQITSIAVTIKTEDVVVVGVKSTVAQVVSVEEKNMSYTIIVSATANDPTLIAAAALAYFYKGKATLVITQMAQMLRYLRAASSALGSMLIIQSSNSIRNV
Eustigmato     HTLQVGLRVYLDNVMALLEGIIALQYVAVLVEPQIAILEGSVSNKVAQVGAGKNFLIMKAATPIGRNISMAIHKTVCEMQIISAMIHITSIAITAKTQNVVVVGIKSTVSQIVTVQQRGLIYTVIVSAAANESTLISTACLAYFYKGQATLVISQMAQMLKYLRAATDSLNSMLIIQSSESIRNV
Extubocell     FTLQVGIQVYLDQVMSLIETIIANDHVAVLLGNGRQILESTISGRIAQIPVGDNFLVVNPGAPIGKGVSMAISKSVCDLQLTSAMIQITSIAVTIKTEDVVVVGVKSTVAQVVTVDEKKMSYTVIVSSSANDSTLIAGAALAYFYQGKATLVITQMAQMLRYLRAASSSLGSMLIIQSSNSIRNV
Fistulifer     ITLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGRQILESTKAGRIAQIPVGEAFLVVSPCEPIGKGLAMAISKSVCELQITSAMIQITAIAVTIKTEDVVVVGVKSTVAQIANVEEKNMSYSIIVSASANDPTLIAAAALAYFYKGKATLVITQMAQMLRYLRAASDSLGSMLIIQSSNSIRNV
Fucus_vesi     FTLQTGIRVYLDDVMLLIEDIVAKDYVAVLLGKKIEILESTVAGRIAQISTGQSFLVVNASVPIGEGIAMAIAKSVCEIQITSSIIQMTSIAITAKTEDVVVVGIKSTVSQVVTIKELGLIYTEIIAAASNQPTLIAGAGIALFYKGQATLVITQLAQMLRYLRAASKNLGSMLIIQSSDSIRNV
Geminigera     FTLQVGIRVYLDQVMSMVEELIAKDYVAVLMGVKLNIAEGTIAGRIAQIDVGEGLKVMDAAEPIGRGMALAISTTVCEMQITSAMIHVTAIAVTAKTEDCVVIGIKSTVAELVSATENDLNYTVIVSASANDPALIAGASIAYFFKGQATLVITQLAQMLRFLRAASNNLGSMLIIQSSDSIRNV

test/ppred-47.phy  view on Meta::CPAN

Proteomona     ISLQVGIRLYLDQVQSLLENIIAADNVIVLVGNGRQISEGTRGGKIAQITVCDIYLVVDSGVPIGKGLSSAIAASVCEIQITSSMIQITSIAITIKQEDIVVVAIKSTVAKIVKLEIKTLNYTIIVTASSNDPTLIASAAIAYFYKGRATLVIGQTAQMLRYFRAASSDLGTMLIIQSSDSIRNV
Prymnesium     VLLQVGIRIYLDQAQALLDEIIAADNVAVLVGTGRKISESVRAGRIAQINVGQKYLVVDAANPLGKGLSGLIAKSVCEIQITSAMIKITSIALTIKKEDIIVVAIKTTVAGVVNLEIKDLAYTIIVAASSSDPTLIASAAIAYFYSGRATLVIGQVAQMLRYFRAASSKLGTMLIIQSSDSFRNI
Pyropia_ha     VTLQVGILVYLEQVQSLLEEVIANNNVVVLVGAGRQIIESTRSGKIAQLTVGNEYLVVSSGTPIGKGLAGAIAKSVCEIQITSAMIQITSIAITIKQEDIVVVAVKSTISKVVNLEIATLSYTIIVAANANEPTLIASSAIAYFYTGRATLVIGQVAQMLRYLRAASSALGSVLVIQASNSLRNV
Pyropia_00     VTLQVGILVYLEQVQSLLEEVIAGNNVVVLVGAGRQIIESTRSGKIAQLTVGNEYLVVSSGAPIGKGLAGAIAKSVCEIQITSSMIQITSIAITIKQEDIVVVAVKSTVSKVVNLEIATLSYTIIVAANANEPTLIASSAIAYFYTGKATLVIGQVAQMLRYLRAASSALGSVLVIQASNSLRNV
Rhizochrom     VTIQVGIRVYLDQVMALLDAIIAADNVVVMIGRGRQILESTRAGRIAQIEVGCQFLVVNPGVPIGKGLSGAIAKSVCAVQITAAMIQITAIAITIKQEDVVVVAIKSTVATITTLEEKNLPYTIIVSASSSDPTLISSASMAYFYNSKATLVVGQVAQMLRYLRAASDGLGSMLIIQSSNSLRNI
Rhodella_m     VVLQVGIRVHLEQVMSLLEELIAGENVVVLVGVGRQISESIRGGKIAQITTGDEYLIVNAGTPIGKGLSGAISKSVCEIQITSSMIQITSIAITIKKEDIVVVAVKATVAKVVNLEIKNLSYTIIVAANANEPTLIANSAIAYFYKGKATLVIGQVAQMLRYLRAASSAFGSVLIIQSSNALRNV
Rhodomonas     ISLQVGIRLYLDQVQSLLENVIAADNVIVLVGSGRQISEGTRGGKIAQITVCDVYLIVDSGIPIGKGLSGAIASSVCEIQITSSMIQITSIAITIKQEDIVVVAIKNTVAKIVNLEIKTLSYTIIVSASSNDPTLIASAAIAYFYNGKATLIIGQVAQMLRYFRAASSGLGTMLIIQSSDSIRNV
Saccharina     ITLQIGIRVYLDQVMSLLEEIIAVDNVVVLVAIGRQILETARSGQIAQIMVGIDYLVVSPAQPIGKGLSSAISKEVCEIQITSAMIQITSIAITIKHEDVVVVAIKSTIAKVVNQEEKGMRYTVIVSANSDDPTLNSSASMAYFYDGKATLVVSQVAQMLRYLRAASPALGSILIIQSSNALRNV
Sargassum_     VTLQVGIRVYLDQVMSLLQEVIAVDNVVVLVATGLQILERPRAGQIAQIMVGIDFLVVSPAQPIGKGLSNAISKEVCEIQITSAMIQITSIAITIKQENVVVVAVKSTVAKVVNQQEKGMTYTVIVAATSDDPTLNASAGMAYFYNGKATLVVSQVAQMLRYLRAASPALGSILIIQSSGALRNV
Stylonema_     IVLQVGIRVYLDQVQSLLEEIIAGENVVVLVGNGRQIKEGTRAGKIAQITVGNKYLTVSSGAPIGKGLSNAIAKSVCELQIVSSMIQKTSIAITIQQEDIIVVAIKSTVAKVVNFEVRTLGYTIVVSANASEPTLLANSAQAYFYSGKLTLVIGQVAQMLKYLRAASASLGSVLVIQSSNALRNI
Synchroma_     VTIQVGIRVYLDQVMALLEEIIAIVNVVVLLNIGRKILESAKGGRIAQIMVGDKFRFVEPALPIGKGLSAAISASVCETQVSSAMIKITSIAITSKKENVVVVAVKSTVAKVISLTEKNVIYTVIIAASSSDPTLIATACIAYFYKGKATLVIDHVAKMLRYIRAASDMLGSMLITQSSNSIRNV
Synedra_ac     ITLQVGIRVYLDQVMSLLEEVIASDNVVVLMGTGRQILESTKAGKIAQIPVGDNFLVVNPASPIGKGLAMAISKSVCELQITSAMIKINSIAVTIKSEDVVVVGVKSTIAKVVNAEDKNMGYTVIVSASANDPTFIAAAALAYFYKGKGTLVITQMAQMLRFLRAASDKLGSMLIIQSSNSIRNV
Synura_spe     ITLQVGIRVYLDQVMSLLEDIIAIDNVVVFLNVGRQILESTTSGRIAQIPVGQSFLVVNAAEPVGKGISGAISKSVCEVQVTSAMIQITSIVITSKQQDVIVVAIKSTVAQIVTLKEHKGSYTVIIAASSEEPSLIASASLAYFYKGKARPIITHVAQMLRYLRAASDSLGSMLIIQSSNSIRNV
Thalassios     ITLQVGIRVYLDQVMSLLEEIIANDNVVVLMGTGRQILESTKAGKIAQIPVGDAFLIVNPGAAIGKGLSSAIAKSVCELQITAAMIQITSIAVTIKSEDVIVVGVKSTVAQVVSAEEKGLSYTIIVSASANDPTLIAVAALAYFYGGKATLIITQMAQMLRYLRAASDALGSMLIIQSANSLRNV
Thalassi00     ITLQVGIRVYLDQTMSLLEEIIANDNVVVLMGTGRQILESTKAGKIAQIPVGESFLVVNPGAAIGKGLASAIAKSVCELQITAAMIQITSIAVTIKSEDVVVVGVKSTIAQVVAAEEKGLSYTIVVSASANDPTLIAVAALAYFYGGKATLVITQMAQMLRYLRAASDSLGSMLIIQSSNSLRNV
Uncultured     VTLQVGIRVYLDSVMALVEEIISSNNVIVFVGTGRQILQSTKSGRIAQITTGDKYLVVDPGVPIGKGLSGAISKSVCGLQLTSAMIQISAIAITIKQEDVIVVAIKSTVAPVVNLQEAGISYTIIVAANSDDPVLIANACIAYFYNGRATLVIGQVGQMLRYLRAASGALGSMLLIQSSNSLRNV
Uncultur00     VLLQVGIRVYLDQAQSLLDEVIAADNVVVLVGNGRKISESVRAGRIAQIDVGKKYLVVNAANPLGKGLSGLIAKSVCEIQITSAMIKITSIALTIKKEDIIVVAIKATVSGVVNSEFKNLAYTIIVSASSNDPTLIASAAIAYFYGGRATLVIGQVAQMLRYFRAASSALGTMLIIQSSDSFRNI
Vaucheria_     VTIQIGIRVYLEQVMSLLEEIIAADNIVVLVGIGREILEAVRAGRIAQIMTGEENLVVEPAAPIGKGLSNAISKSVCEIQITSAMIQITSIAITSKQEDVIVVAIKSAVAKVVGSKDQGMAYTVIVAATSDDPTLIASACMAYFYSGKATLIISQAAQMLRYLRAASDALGSMLVIASSNSVRNV

test/sparse_seqs.ali  view on Meta::CPAN

#
#
>seq1
**********************************************************************************************************************************************************************************************************************************************************...
>seq2
**********************************************************************************************************************************************************************************************************************************************************...
>seq3
**********************************************************************************************************************************************************************************************************************************************************...
>seq4
**********************************************************************************************************************************************************************************************************************************************************...
>seq5
**********************************************************************************************************************************************************************************************************************************************************...
>seq6
**********************************************************************************************************************************************************************************************************************************************************...
>seq7
**********************************************************************************************************************************************************************************************************************************************************...
>seq8
**********************************************************************************************************************************************************************************************************************************************************...
>seq9
**********************************************************************************************************************************************************************************************************************************************************...

test/sparse_seqs.fasta  view on Meta::CPAN

------------------------------------------------------------
-----------------------------SQFERKD----DNG-G---------LV----
--EKLDNF--ALL------IG---------------------------KF----GM----
------------------------------------AMAL----L-T-FS----IML---
--------------------------------------IRW-------------------
-------F-VAE-FILNT----ACND--FVDAPTC----SSYRQCNYDES----------
---------TLSCF----RV------FSSGPDLE--------------------------
----EILK-------FV-VT--------------A-----------I-------------
----TI-L---------------VV-AIP-------------------E---GL-PL---
---AV--TLSL--AI--------S-MR---RMT---------F----D-N---NQ----V
---KHLD-----------SCETM-G----SAT-----------------TI--CSD-K--
T-------------------GT--------------------------------------
--------L-TLN------------------------------------K-M--TVV---
--SAT------------------LG---------------ESLA-TIS-RNANER-----
-LSVGE------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------S
LSK------------G--------------GS----------QI----------------
-------------------SARL-----KDILA--QGM------I---------------

test/sparse_seqs_pad.ali  view on Meta::CPAN

#
#
>seq1
**********************************************************************************************************************************************************************************************************************************************************...
>seq2
**********************************************************************************************************************************************************************************************************************************************************...
>seq3
**********************************************************************************************************************************************************************************************************************************************************...
>seq4
**********************************************************************************************************************************************************************************************************************************************************...
>seq5
**********************************************************************************************************************************************************************************************************************************************************...
>seq6
**********************************************************************************************************************************************************************************************************************************************************...
>seq7
**********************************************************************************************************************************************************************************************************************************************************...
>seq8
**********************************************************************************************************************************************************************************************************************************************************...
>seq9
**********************************************************************************************************************************************************************************************************************************************************...

test/sparse_seqs_pad.fasta  view on Meta::CPAN

------------------------------------------------------------
-----------------------------SQFERKD----DNG-G---------LV----
--EKLDNF--ALL------IG---------------------------KF----GM----
------------------------------------AMAL----L-T-FS----IML---
--------------------------------------IRW-------------------
-------F-VAE-FILNT----ACND--FVDAPTC----SSYRQCNYDES----------
---------TLSCF----RV------FSSGPDLE--------------------------
----EILK-------FV-VT--------------A-----------I-------------
----TI-L---------------VV-AIP-------------------E---GL-PL---
---AV--TLSL--AI--------S-MR---RMT---------F----D-N---NQ----V
---KHLD-----------SCETM-G----SAT-----------------TI--CSD-K--
T-------------------GT--------------------------------------
--------L-TLN------------------------------------K-M--TVV---
--SAT------------------LG---------------ESLA-TIS-RNANER-----
-LSVGE------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------S
LSK------------G--------------GS----------QI----------------
-------------------SARL-----KDILA--QGM------I---------------

test/superideal.ali  view on Meta::CPAN

# built by filtered_ali
#
>Arabidopsis thaliana_3702@22101
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Chlamydomonas reinhardtii_3055@22762
AVVGDLEKRFVALLAAVLKYLDNLTGTVASELTKVDIEEKAGAKNELLVKEKEANDLYAEKFLKPSFQDDASNKFVTEALMECIIIGIYRLKVSIEKKEEMKAQLLTVVDANNTVPITADGWIPDVKTFNDAADATVMFPKNVSNTGLCIQVEKAKLFNETVDRTRRDGSIMSVTNIETFPSSLTAGYRIIVEAAMHACEIQRLTVAYVEHARTYAERLGINLNNFWYAQPMTGEEAEMDECSNVCDVVI...
>Chondrus crispus_2769@21660
TTIKDIAKRLVCLKTSVIKFMEALSDSAATQLTMAPIGTKISGANDVTVKTKDANDFFGAAHLKPSLEAATSDAFAGDSLLQVLIIGVLKLNVSLEREVKTEASIITVLAADNVTSVDSDGWQEDTKLIQNEKECTIMMEKKFADTDLCIKLERKTALSTLPLH****ASLHSATPLRPLRTYDAIHLGLAIPGSLSLLSVVASKALHCDGS**FHAKRFLELLSRFECEKGNASARQLPGMEGGVQVVI...
>Cyanophora paradoxa_2762@11572
LAVKNLKKRFICLMKAVIQYASKVTSTAASELKKTNIEESAAASEDVIVPEKDANDLYGAAYLKPSFEEAADEVLVGESLLNCLII*VYRLPTSVEKKEEVKAEILTLLDPENVVDADKDGWIPKIESFSKASDATIMFDKKFADLELCKKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Guillardia theta_55529@17291
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Ostreococcus lucimarinus_242159@23601
AKVGDLKQTFVCMLNAILEYAKNVTNTGASEKTKVDVEAKAASPNSVCTKEKDGSTIFAEKYCKTNFQDDASNEFCGESLLQTIILGIYLKSVAIDKEMAKEAKILTVVAEDKIVSVDNEGWIPDLKAFQGENECSIMMDAKFGDTNL*IKLDKKKALARVLDEDSNAGAIMAGKKVATFPSAMTIGLRIVIESALHAMEMQKLTVAMAEHAPEYSQRLGLNVDDVIVCQPETGEMAEVDTVSSAVDICV...
>Pyropia yezoensis_2788@17320
TAIKDLAKRLVCLKTSIIEYTAALSSAATSELKMAPIGAEISGSNDVTVKTADANDMFGAEFLRPSLEAAASNKFAGESMLDVLVIVVLRLSTSIEKEEEIAKKIIVVAAPDKLVSVDADDTQPKTELINAEADCTLAFDATYANTEVATKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Selaginella moellendorffii_88036@22200
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
# built by filtered_ali
#
>Arabidopsis thaliana_3702@22101
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Chlamydomonas reinhardtii_3055@22762
AVVGDLEKRFVALLAAVLKYLDNLTGTVASELTKVDIEEKAGAKNELLVKEKEANDLYAEKFLKPSFQDDASNKFVTEALMECIIIGIYRLKVSIEKKEEMKAQLLTVVDANNTVPITADGWIPDVKTFNDAADATVMFPKNVSNTGLCIQVEKAKLFNETVDRTRRDGSIMSVTNIETFPSSLTAGYRIIVEAAMHACEIQRLTVAYVEHARTYAERLGINLNNFWYAQPMTGEEAEMDECSNVCDVVI...
>Chondrus crispus_2769@21660
TTIKDIAKRLVCLKTSVIKFMEALSDSAATQLTMAPIGTKISGANDVTVKTKDANDFFGAAHLKPSLEAATSDAFAGDSLLQVLIIGVLKLNVSLEREVKTEASIITVLAADNVTSVDSDGWQEDTKLIQNEKECTIMMEKKFADTDLCIKLERKTALSTLPLH****ASLHSATPLRPLRTYDAIHLGLAIPGSLSLLSVVASKALHCDGS**FHAKRFLELLSRFECEKGNASARQLPGMEGGVQVVI...
>Cyanophora paradoxa_2762@11572
LAVKNLKKRFICLMKAVIQYASKVTSTAASELKKTNIEESAAASEDVIVPEKDANDLYGAAYLKPSFEEAADEVLVGESLLNCLII*VYRLPTSVEKKEEVKAEILTLLDPENVVDADKDGWIPKIESFSKASDATIMFDKKFADLELCKKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Guillardia theta_55529@17291
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Ostreococcus lucimarinus_242159@23601
AKVGDLKQTFVCMLNAILEYAKNVTNTGASEKTKVDVEAKAASPNSVCTKEKDGSTIFAEKYCKTNFQDDASNEFCGESLLQTIILGIYLKSVAIDKEMAKEAKILTVVAEDKIVSVDNEGWIPDLKAFQGENECSIMMDAKFGDTNL*IKLDKKKALARVLDEDSNAGAIMAGKKVATFPSAMTIGLRIVIESALHAMEMQKLTVAMAEHAPEYSQRLGLNVDDVIVCQPETGEMAEVDTVSSAVDICV...
>Pyropia yezoensis_2788@17320
TAIKDLAKRLVCLKTSIIEYTAALSSAATSELKMAPIGAEISGSNDVTVKTADANDMFGAEFLRPSLEAAASNKFAGESMLDVLVIVVLRLSTSIEKEEEIAKKIIVVAAPDKLVSVDADDTQPKTELINAEADCTLAFDATYANTEVATKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Selaginella moellendorffii_88036@22200
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
# built by filtered_ali
#
>Arabidopsis thaliana_3702@22101
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Chlamydomonas reinhardtii_3055@22762
AVVGDLEKRFVALLAAVLKYLDNLTGTVASELTKVDIEEKAGAKNELLVKEKEANDLYAEKFLKPSFQDDASNKFVTEALMECIIIGIYRLKVSIEKKEEMKAQLLTVVDANNTVPITADGWIPDVKTFNDAADATVMFPKNVSNTGLCIQVEKAKLFNETVDRTRRDGSIMSVTNIETFPSSLTAGYRIIVEAAMHACEIQRLTVAYVEHARTYAERLGINLNNFWYAQPMTGEEAEMDECSNVCDVVI...
>Chondrus crispus_2769@21660
TTIKDIAKRLVCLKTSVIKFMEALSDSAATQLTMAPIGTKISGANDVTVKTKDANDFFGAAHLKPSLEAATSDAFAGDSLLQVLIIGVLKLNVSLEREVKTEASIITVLAADNVTSVDSDGWQEDTKLIQNEKECTIMMEKKFADTDLCIKLERKTALSTLPLH****ASLHSATPLRPLRTYDAIHLGLAIPGSLSLLSVVASKALHCDGS**FHAKRFLELLSRFECEKGNASARQLPGMEGGVQVVI...
>Cyanophora paradoxa_2762@11572
LAVKNLKKRFICLMKAVIQYASKVTSTAASELKKTNIEESAAASEDVIVPEKDANDLYGAAYLKPSFEEAADEVLVGESLLNCLII*VYRLPTSVEKKEEVKAEILTLLDPENVVDADKDGWIPKIESFSKASDATIMFDKKFADLELCKKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Guillardia theta_55529@17291
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Ostreococcus lucimarinus_242159@23601
AKVGDLKQTFVCMLNAILEYAKNVTNTGASEKTKVDVEAKAASPNSVCTKEKDGSTIFAEKYCKTNFQDDASNEFCGESLLQTIILGIYLKSVAIDKEMAKEAKILTVVAEDKIVSVDNEGWIPDLKAFQGENECSIMMDAKFGDTNL*IKLDKKKALARVLDEDSNAGAIMAGKKVATFPSAMTIGLRIVIESALHAMEMQKLTVAMAEHAPEYSQRLGLNVDDVIVCQPETGEMAEVDTVSSAVDICV...
>Pyropia yezoensis_2788@17320
TAIKDLAKRLVCLKTSIIEYTAALSSAATSELKMAPIGAEISGSNDVTVKTADANDMFGAEFLRPSLEAAASNKFAGESMLDVLVIVVLRLSTSIEKEEEIAKKIIVVAAPDKLVSVDADDTQPKTELINAEADCTLAFDATYANTEVATKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Selaginella moellendorffii_88036@22200
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...

test/superideal_0.1.ali  view on Meta::CPAN

# built by filtered_ali
# built by filtered_ali
# built by filtered_ali
>Arabidopsis thaliana_3702@22101
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Chlamydomonas reinhardtii_3055@22762
AVVGDLEKRFVALLAAVLKYLDNLTGTVASELTKVDIEEKAGAKNELLVKEKEANDLYAEKFLKPSFQDDASNKFVTEALMECIIIGIYRLKVSIEKKEEMKAQLLTVVDANNTVPITADGWIPDVKTFNDAADATVMFPKNVSNTGLCIQVEKAKLFNETVDRTRRDGSIMSVTNIETFPSSLTAGYRIIVEAAMHACEIQRLTVAYVEHARTYAERLGINLNNFWYAQPMTGEEAEMDECSNVCDVVI...
>Chondrus crispus_2769@21660
TTIKDIAKRLVCLKTSVIKFMEALSDSAATQLTMAPIGTKISGANDVTVKTKDANDFFGAAHLKPSLEAATSDAFAGDSLLQVLIIGVLKLNVSLEREVKTEASIITVLAADNVTSVDSDGWQEDTKLIQNEKECTIMMEKKFADTDLCIKLERKTALSTLPLH****ASLHSATPLRPLRTYDAIHLGLAIPGSLSLLSVVASKALHCDGS**FHAKRFLELLSRFECEKGNASARQLPGMEGGVQVVI...
>Cyanophora paradoxa_2762@11572
LAVKNLKKRFICLMKAVIQYASKVTSTAASELKKTNIEESAAASEDVIVPEKDANDLYGAAYLKPSFEEAADEVLVGESLLNCLII*VYRLPTSVEKKEEVKAEILTLLDPENVVDADKDGWIPKIESFSKASDATIMFDKKFADLELCKKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Guillardia theta_55529@17291
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Ostreococcus lucimarinus_242159@23601
AKVGDLKQTFVCMLNAILEYAKNVTNTGASEKTKVDVEAKAASPNSVCTKEKDGSTIFAEKYCKTNFQDDASNEFCGESLLQTIILGIYLKSVAIDKEMAKEAKILTVVAEDKIVSVDNEGWIPDLKAFQGENECSIMMDAKFGDTNL*IKLDKKKALARVLDEDSNAGAIMAGKKVATFPSAMTIGLRIVIESALHAMEMQKLTVAMAEHAPEYSQRLGLNVDDVIVCQPETGEMAEVDTVSSAVDICV...
>Pyropia yezoensis_2788@17320
TAIKDLAKRLVCLKTSIIEYTAALSSAATSELKMAPIGAEISGSNDVTVKTADANDMFGAEFLRPSLEAAASNKFAGESMLDVLVIVVLRLSTSIEKEEEIAKKIIVVAAPDKLVSVDADDTQPKTELINAEADCTLAFDATYANTEVATKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Selaginella moellendorffii_88036@22200
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Arabidopsis thaliana_3702@22101
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Chlamydomonas reinhardtii_3055@22762
AVVGDLEKRFVALLAAVLKYLDNLTGTVASELTKVDIEEKAGAKNELLVKEKEANDLYAEKFLKPSFQDDASNKFVTEALMECIIIGIYRLKVSIEKKEEMKAQLLTVVDANNTVPITADGWIPDVKTFNDAADATVMFPKNVSNTGLCIQVEKAKLFNETVDRTRRDGSIMSVTNIETFPSSLTAGYRIIVEAAMHACEIQRLTVAYVEHARTYAERLGINLNNFWYAQPMTGEEAEMDECSNVCDVVI...
>Chondrus crispus_2769@21660
TTIKDIAKRLVCLKTSVIKFMEALSDSAATQLTMAPIGTKISGANDVTVKTKDANDFFGAAHLKPSLEAATSDAFAGDSLLQVLIIGVLKLNVSLEREVKTEASIITVLAADNVTSVDSDGWQEDTKLIQNEKECTIMMEKKFADTDLCIKLERKTALSTLPLH****ASLHSATPLRPLRTYDAIHLGLAIPGSLSLLSVVASKALHCDGS**FHAKRFLELLSRFECEKGNASARQLPGMEGGVQVVI...
>Cyanophora paradoxa_2762@11572
LAVKNLKKRFICLMKAVIQYASKVTSTAASELKKTNIEESAAASEDVIVPEKDANDLYGAAYLKPSFEEAADEVLVGESLLNCLII*VYRLPTSVEKKEEVKAEILTLLDPENVVDADKDGWIPKIESFSKASDATIMFDKKFADLELCKKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Guillardia theta_55529@17291
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Ostreococcus lucimarinus_242159@23601
AKVGDLKQTFVCMLNAILEYAKNVTNTGASEKTKVDVEAKAASPNSVCTKEKDGSTIFAEKYCKTNFQDDASNEFCGESLLQTIILGIYLKSVAIDKEMAKEAKILTVVAEDKIVSVDNEGWIPDLKAFQGENECSIMMDAKFGDTNL*IKLDKKKALARVLDEDSNAGAIMAGKKVATFPSAMTIGLRIVIESALHAMEMQKLTVAMAEHAPEYSQRLGLNVDDVIVCQPETGEMAEVDTVSSAVDICV...
>Pyropia yezoensis_2788@17320
TAIKDLAKRLVCLKTSIIEYTAALSSAATSELKMAPIGAEISGSNDVTVKTADANDMFGAEFLRPSLEAAASNKFAGESMLDVLVIVVLRLSTSIEKEEEIAKKIIVVAAPDKLVSVDADDTQPKTELINAEADCTLAFDATYANTEVATKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Selaginella moellendorffii_88036@22200
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Arabidopsis thaliana_3702@22101
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Chlamydomonas reinhardtii_3055@22762
AVVGDLEKRFVALLAAVLKYLDNLTGTVASELTKVDIEEKAGAKNELLVKEKEANDLYAEKFLKPSFQDDASNKFVTEALMECIIIGIYRLKVSIEKKEEMKAQLLTVVDANNTVPITADGWIPDVKTFNDAADATVMFPKNVSNTGLCIQVEKAKLFNETVDRTRRDGSIMSVTNIETFPSSLTAGYRIIVEAAMHACEIQRLTVAYVEHARTYAERLGINLNNFWYAQPMTGEEAEMDECSNVCDVVI...
>Chondrus crispus_2769@21660
TTIKDIAKRLVCLKTSVIKFMEALSDSAATQLTMAPIGTKISGANDVTVKTKDANDFFGAAHLKPSLEAATSDAFAGDSLLQVLIIGVLKLNVSLEREVKTEASIITVLAADNVTSVDSDGWQEDTKLIQNEKECTIMMEKKFADTDLCIKLERKTALSTLPLH****ASLHSATPLRPLRTYDAIHLGLAIPGSLSLLSVVASKALHCDGS**FHAKRFLELLSRFECEKGNASARQLPGMEGGVQVVI...
>Cyanophora paradoxa_2762@11572
LAVKNLKKRFICLMKAVIQYASKVTSTAASELKKTNIEESAAASEDVIVPEKDANDLYGAAYLKPSFEEAADEVLVGESLLNCLII*VYRLPTSVEKKEEVKAEILTLLDPENVVDADKDGWIPKIESFSKASDATIMFDKKFADLELCKKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Guillardia theta_55529@17291
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...
>Ostreococcus lucimarinus_242159@23601
AKVGDLKQTFVCMLNAILEYAKNVTNTGASEKTKVDVEAKAASPNSVCTKEKDGSTIFAEKYCKTNFQDDASNEFCGESLLQTIILGIYLKSVAIDKEMAKEAKILTVVAEDKIVSVDNEGWIPDLKAFQGENECSIMMDAKFGDTNL*IKLDKKKALARVLDEDSNAGAIMAGKKVATFPSAMTIGLRIVIESALHAMEMQKLTVAMAEHAPEYSQRLGLNVDDVIVCQPETGEMAEVDTVSSAVDICV...
>Pyropia yezoensis_2788@17320
TAIKDLAKRLVCLKTSIIEYTAALSSAATSELKMAPIGAEISGSNDVTVKTADANDMFGAEFLRPSLEAAASNKFAGESMLDVLVIVVLRLSTSIEKEEEIAKKIIVVAAPDKLVSVDADDTQPKTELINAEADCTLAFDATYANTEVATKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ...
>Selaginella moellendorffii_88036@22200
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ?...

test/superideal_0.3.ali  view on Meta::CPAN

# built by filtered_ali
# built by filtered_ali
# built by filtered_ali
>Arabidopsis thaliana_3702@22101
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X?X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X...
>Chlamydomonas reinhardtii_3055@22762
AVVGDLEKRFVALLAAVLKYLDNLTGTVASELTKVDIEEKAGAKNELLVKEKEANDLYAEKFLKPSFQDDASNKFVTEALMECIIIGIYRLKVSIEKKEEMKAQLLTVVDANNTVPITADGWIPDVKTFNDAADATVMFPKNVSNTGLCIQVEKAKLFNETVDRGSIMSVTNIETFPSSLTAGYRIIVEAAMHACEIQRLTVAYVEHAYAERLGINLNNFWYAQPMTGEEAEMDECSNVCDVVIVAALVP...
>Chondrus crispus_2769@21660
TTIKDIAKRLVCLKTSVIKFMEALSDSAATQLTMAPIGTKISGANDVTVKTKDANDFFGAAHLKPSLEAATSDAFAGDSLLQVLIIGVLKLNVSLEREVKTEASIITVLAADNVTSVDSDGWQEDTKLIQNEKECTIMMEKKFADTDLCIKLERKTALSTLPLHASLHSATPLRPLRTYDAIHLGLAIPGSLSLLSVVASKALHCDGSFHAKRFLELLSRFECEKGNASARQLPGMEGGVQVVILTFMFR...
>Cyanophora paradoxa_2762@11572
LAVKNLKKRFICLMKAVIQYASKVTSTAASELKKTNIEESAAASEDVIVPEKDANDLYGAAYLKPSFEEAADEVLVGESLLNCLII*VYRLPTSVEKKEEVKAEILTLLDPENVVDADKDGWIPKIESFSKASDATIMFDKKFADLELCKKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ????X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??...
>Guillardia theta_55529@17291
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X?X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X...
>Ostreococcus lucimarinus_242159@23601
AKVGDLKQTFVCMLNAILEYAKNVTNTGASEKTKVDVEAKAASPNSVCTKEKDGSTIFAEKYCKTNFQDDASNEFCGESLLQTIILGIYLKSVAIDKEMAKEAKILTVVAEDKIVSVDNEGWIPDLKAFQGENECSIMMDAKFGDTNL*IKLDKKKALARVLDEGAIMAGKKVATFPSAMTIGLRIVIESALHAMEMQKLTVAMAEHAYSQRLGLNVDDVIVCQPETGEMAEVDTVSSAVDICVVAALVP...
>Pyropia yezoensis_2788@17320
TAIKDLAKRLVCLKTSIIEYTAALSSAATSELKMAPIGAEISGSNDVTVKTADANDMFGAEFLRPSLEAAASNKFAGESMLDVLVIVVLRLSTSIEKEEEIAKKIIVVAAPDKLVSVDADDTQPKTELINAEADCTLAFDATYANTEVATKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ????X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??...
>Selaginella moellendorffii_88036@22200
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X?X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X...
>Arabidopsis thaliana_3702@22101
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X?X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X...
>Chlamydomonas reinhardtii_3055@22762
AVVGDLEKRFVALLAAVLKYLDNLTGTVASELTKVDIEEKAGAKNELLVKEKEANDLYAEKFLKPSFQDDASNKFVTEALMECIIIGIYRLKVSIEKKEEMKAQLLTVVDANNTVPITADGWIPDVKTFNDAADATVMFPKNVSNTGLCIQVEKAKLFNETVDRGSIMSVTNIETFPSSLTAGYRIIVEAAMHACEIQRLTVAYVEHAYAERLGINLNNFWYAQPMTGEEAEMDECSNVCDVVIVAALVP...
>Chondrus crispus_2769@21660
TTIKDIAKRLVCLKTSVIKFMEALSDSAATQLTMAPIGTKISGANDVTVKTKDANDFFGAAHLKPSLEAATSDAFAGDSLLQVLIIGVLKLNVSLEREVKTEASIITVLAADNVTSVDSDGWQEDTKLIQNEKECTIMMEKKFADTDLCIKLERKTALSTLPLHASLHSATPLRPLRTYDAIHLGLAIPGSLSLLSVVASKALHCDGSFHAKRFLELLSRFECEKGNASARQLPGMEGGVQVVILTFMFR...
>Cyanophora paradoxa_2762@11572
LAVKNLKKRFICLMKAVIQYASKVTSTAASELKKTNIEESAAASEDVIVPEKDANDLYGAAYLKPSFEEAADEVLVGESLLNCLII*VYRLPTSVEKKEEVKAEILTLLDPENVVDADKDGWIPKIESFSKASDATIMFDKKFADLELCKKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ????X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??...
>Guillardia theta_55529@17291
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X?X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X...
>Ostreococcus lucimarinus_242159@23601
AKVGDLKQTFVCMLNAILEYAKNVTNTGASEKTKVDVEAKAASPNSVCTKEKDGSTIFAEKYCKTNFQDDASNEFCGESLLQTIILGIYLKSVAIDKEMAKEAKILTVVAEDKIVSVDNEGWIPDLKAFQGENECSIMMDAKFGDTNL*IKLDKKKALARVLDEGAIMAGKKVATFPSAMTIGLRIVIESALHAMEMQKLTVAMAEHAYSQRLGLNVDDVIVCQPETGEMAEVDTVSSAVDICVVAALVP...
>Pyropia yezoensis_2788@17320
TAIKDLAKRLVCLKTSIIEYTAALSSAATSELKMAPIGAEISGSNDVTVKTADANDMFGAEFLRPSLEAAASNKFAGESMLDVLVIVVLRLSTSIEKEEEIAKKIIVVAAPDKLVSVDADDTQPKTELINAEADCTLAFDATYANTEVATKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ????X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??...
>Selaginella moellendorffii_88036@22200
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X?X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X...
>Arabidopsis thaliana_3702@22101
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X?X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X...
>Chlamydomonas reinhardtii_3055@22762
AVVGDLEKRFVALLAAVLKYLDNLTGTVASELTKVDIEEKAGAKNELLVKEKEANDLYAEKFLKPSFQDDASNKFVTEALMECIIIGIYRLKVSIEKKEEMKAQLLTVVDANNTVPITADGWIPDVKTFNDAADATVMFPKNVSNTGLCIQVEKAKLFNETVDRGSIMSVTNIETFPSSLTAGYRIIVEAAMHACEIQRLTVAYVEHAYAERLGINLNNFWYAQPMTGEEAEMDECSNVCDVVIVAALVP...
>Chondrus crispus_2769@21660
TTIKDIAKRLVCLKTSVIKFMEALSDSAATQLTMAPIGTKISGANDVTVKTKDANDFFGAAHLKPSLEAATSDAFAGDSLLQVLIIGVLKLNVSLEREVKTEASIITVLAADNVTSVDSDGWQEDTKLIQNEKECTIMMEKKFADTDLCIKLERKTALSTLPLHASLHSATPLRPLRTYDAIHLGLAIPGSLSLLSVVASKALHCDGSFHAKRFLELLSRFECEKGNASARQLPGMEGGVQVVILTFMFR...
>Cyanophora paradoxa_2762@11572
LAVKNLKKRFICLMKAVIQYASKVTSTAASELKKTNIEESAAASEDVIVPEKDANDLYGAAYLKPSFEEAADEVLVGESLLNCLII*VYRLPTSVEKKEEVKAEILTLLDPENVVDADKDGWIPKIESFSKASDATIMFDKKFADLELCKKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ????X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??...
>Guillardia theta_55529@17291
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X?X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X...
>Ostreococcus lucimarinus_242159@23601
AKVGDLKQTFVCMLNAILEYAKNVTNTGASEKTKVDVEAKAASPNSVCTKEKDGSTIFAEKYCKTNFQDDASNEFCGESLLQTIILGIYLKSVAIDKEMAKEAKILTVVAEDKIVSVDNEGWIPDLKAFQGENECSIMMDAKFGDTNL*IKLDKKKALARVLDEGAIMAGKKVATFPSAMTIGLRIVIESALHAMEMQKLTVAMAEHAYSQRLGLNVDDVIVCQPETGEMAEVDTVSSAVDICVVAALVP...
>Pyropia yezoensis_2788@17320
TAIKDLAKRLVCLKTSIIEYTAALSSAATSELKMAPIGAEISGSNDVTVKTADANDMFGAEFLRPSLEAAASNKFAGESMLDVLVIVVLRLSTSIEKEEEIAKKIIVVAAPDKLVSVDADDTQPKTELINAEADCTLAFDATYANTEVATKLE ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ????X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??...
>Selaginella moellendorffii_88036@22200
 ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X?X ??X ??X ??X ??X ??X ??X ??X ??X ??X ??X...



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