Bio-Biblio

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lib/Bio/Biblio/Proceeding.pm  view on Meta::CPAN

A storage object for a conference proceeding.
See its place in the class hierarchy in
http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif

=head2 Attributes

There are no specific attributes in this class
(however, you can set and get all attributes defined in the parent classes).

=head1 BUGS AND LIMITATIONS

This class should be probably somewhere else in the class hierarchy
because a proceeding is actrually a collection of resources. Perhaps
this will be changed in the future.

=head1 SEE ALSO

=over 4

=item *

lib/Bio/DB/Biblio/biofetch.pm  view on Meta::CPAN

 Title   : postprocess_data
 Usage   : $self->postprocess_data ( 'type' => 'string',
                                     'location' => \$datastr);
 Function: process downloaded data before loading into a Bio::SeqIO
 Returns : void
 Args    : hash with two keys - 'type' can be 'string' or 'file'
                              - 'location' either file location or string
                                           reference containing data

=head1 BUGS AND LIMITATIONS

=over 4

*
Only method get_by_id() is supported

=back

=head1 FEEDBACK

lib/Bio/DB/Biblio/eutils.pm  view on Meta::CPAN

  Args    : on set, new value (a scalar or undef, optional)

=head2 query_key

  Title   : query_key
  Usage   : $obj->query_key($newval)
  Function: holds query_key from ESearch document
  Returns : value of query_key (a scalar)
  Args    : on set, new value (a scalar or undef, optional)

=head1 BUGS AND LIMITATIONS

=over 4

*
More testing and debugging needed to ensure that returned citations
are properly transferred even if they contain foreign characters.
*
Maximum record count (MAX_RECORDS) returned currently hard coded to
100K.
*

lib/Bio/DB/Biblio/soap.pm  view on Meta::CPAN

This is an actual new() method (except for the real object creation
and its blessing which is done in the parent class Bio::Root::Root in
method _create_object).

Note that this method is called always as an I<object> method (never as
a I<class> method) - and that the object who calls this method may
already be partly initiated (from Bio::Biblio::new method); so if you
need to do some tricks with the 'class invocation' you need to change
Bio::Biblio::new method, not this one.

=head1 BUGS AND LIMITATIONS

=over 4

*
Methods returning a boolean value (I<has_next>, I<exists> and
I<contains>) can be used only with SOAP::Lite version 0.52 and newer
(probably due to a bug in the older SOAP::Lite).
*
It does not use WSDL.
*