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example/example3/workflow.min.drake  view on Meta::CPAN

;
; Variables 
; Indir: /home/guests/jir2004/workflow
; Outdir: /home/guests/jir2004/workflow/output/backup
; Local Variables:
;	INPUT: {$self->indir}/{$sample}.csv
;	OUTPUT: {$self->outdir}/{$sample}.csv
;	thing: other thing
;

/home/guests/jir2004/workflow/output/backup/$[SAMPLE].csv <- /home/guests/jir2004/workflow/$[SAMPLE].csv
	cp $INPUT $OUTPUT


;
; Ending backup
;


;
; Starting grep_VARA

example/example3/workflow.min.drake  view on Meta::CPAN

;
; Variables 
; Indir: /home/guests/jir2004/workflow/output/backup
; Outdir: /home/guests/jir2004/workflow/output/grep_vara
; Local Variables:
;	OUTPUT: {$self->outdir}/{$sample}.grep_VARA.csv
;	INPUT: {$self->indir}/{$sample}.csv
;

/home/guests/jir2004/workflow/output/grep_vara/$[SAMPLE].grep_VARA.csv <- /home/guests/jir2004/workflow/output/backup/$[SAMPLE].csv
	echo "Working on /home/guests/jir2004/workflow/output/backup/$SAMPLEcsv"
	grep -i "VARA" /home/guests/jir2004/workflow/output/backup/$SAMPLE.csv >> /home/guests/jir2004/workflow/output/grep_vara/$SAMPLE.grep_VARA.csv \
	|| touch /home/guests/jir2004/workflow/output/grep_vara/$SAMPLE.grep_VARA.csv


;
; Ending grep_VARA
;

example/example3/workflow.min.drake  view on Meta::CPAN

;
; Variables 
; Indir: /home/guests/jir2004/workflow/output/grep_vara
; Outdir: /home/guests/jir2004/workflow/output/grep_varb
; Local Variables:
;	OUTPUT: {$self->outdir}/{$sample}.grep_VARA.grep_VARB.csv
;	INPUT: {$self->indir}/{$sample}.grep_VARA.csv
;

/home/guests/jir2004/workflow/output/grep_varb/$[SAMPLE].grep_VARA.grep_VARB.csv <- /home/guests/jir2004/workflow/output/grep_vara/$[SAMPLE].grep_VARA.csv
	grep -i "VARB" /home/guests/jir2004/workflow/output/grep_vara/$SAMPLE.grep_VARA.csv >> /home/guests/jir2004/workflow/output/grep_varb/$SAMPLE.grep_VARA.grep_VARB.csv || touch /home/guests/jir2004/workflow/output/grep_varb/$SAMPLE.grep_VARA.grep_VARB...


;
; Ending grep_VARB
;

;
; Ending Workflow
;