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bin/makeMicroarrayDataset.pl  view on Meta::CPAN

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    print STDOUT <<EOF;

  Usage:

$0 -file <file/name> -name <intended/dataset/name> [-dataout <repository_directory> -imageout <image directory> -contrast <float> -colorscheme <rg|yb> -corrcutoff <float> -verbose]

    -----------------------------------------------------------------------------

    -file        = required input file (currently only '.cdt' files supported)

    -name        = required dataset name to be created
	           (may be delimited by slashes(/) to imply hierarchy)

    -rootpath    = required root directory, under which must exist html
		   and data directories

    -contrast    = optional contrast value for the generated images
                   (defaults to 4, As the data are expected to be in
                   log base 2, this corresponds to a 16-fold change as
                   the maximum color in any image)

    -colorscheme = optional color scheme used for generating the images
	           (rg = red/green, yb = yellow/blue ; defaults to yellow/blue)