Bio-Palantir
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xtest/Refiner_pks_regions.js view on Meta::CPAN
var recordData = [
{
"length": 48529,
"seq_id": "c00001_GCF_000..",
"regions": [
{
"ttaCodons": [],
"products": [
"NRPS-like",
"T1PKS"
],
"end": 48529,
"clusters": [
{
"product": "CC 1: chemical_hybrid",
"end": 48528,
"tool": "",
"height": 0,
"isSuperCluster": true,
"neighbouring_start": 0,
"start": 1,
"neighbouring_end": 48529
},
{
"product": "NRPS-like",
"end": 28529,
"tool": "rule-based-clusters",
"height": 2,
"isSuperCluster": false,
"neighbouring_start": 0,
"start": 20000,
"neighbouring_end": 48529
},
{
"product": "T1PKS",
"end": 28529,
"tool": "rule-based-clusters",
"height": 4,
"isSuperCluster": false,
"neighbouring_start": 0,
"start": 20000,
"neighbouring_end": 48529
}
],
"idx": 1,
"type": "NRPS-like,T1PKS",
"orfs": [
{
"end": 2382,
"strand": 1,
"type": "transport",
"locus_tag": "ctg1_3821",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3821</strong><br>\n \n <br>\n Locus tag: ctg1_3821<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 1,624 - 2,382,\n (total: 759 nt)<br>\n <br>\n \n transpo...
"start": 1624
},
{
"end": 3532,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3822",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3822</strong><br>\n \n <br>\n Locus tag: ctg1_3822<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 2,435 - 3,532,\n (total: 1098 nt)<br>\n <br>\n \n</div>\n...
"start": 2435
},
{
"end": 3826,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3823",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3823</strong><br>\n \n <br>\n Locus tag: ctg1_3823<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 3,650 - 3,826,\n (total: 177 nt)<br>\n <br>\n \n</div>\n<...
"start": 3650
},
{
"end": 5257,
"strand": -1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3824",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3824</strong><br>\n \n <br>\n Locus tag: ctg1_3824<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 3,887 - 5,257,\n (total: 1371 nt)<br>\n <br>\n \n biosyn...
"start": 3887
},
{
"end": 5782,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3825",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3825</strong><br>\n \n <br>\n Locus tag: ctg1_3825<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 5,387 - 5,782,\n (total: 396 nt)<br>\n <br>\n \n</div>\n<...
"start": 5387
},
{
"end": 7582,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3826",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3826</strong><br>\n \n <br>\n Locus tag: ctg1_3826<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 5,897 - 7,582,\n (total: 1686 nt)<br>\n <br>\n \n</div>\n...
"start": 5897
},
{
"end": 7979,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3827",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3827</strong><br>\n \n <br>\n Locus tag: ctg1_3827<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 7,707 - 7,979,\n (total: 273 nt)<br>\n <br>\n \n</div>\n<...
"start": 7707
},
{
"end": 8266,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3828",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3828</strong><br>\n \n <br>\n Locus tag: ctg1_3828<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 7,988 - 8,266,\n (total: 279 nt)<br>\n <br>\n \n</div>\n<...
"start": 7988
},
{
"end": 8698,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3829",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3829</strong><br>\n \n <br>\n Locus tag: ctg1_3829<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 8,309 - 8,698,\n (total: 390 nt)<br>\n <br>\n \n</div>\n<...
"start": 8309
},
{
"end": 9144,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3830",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3830</strong><br>\n \n <br>\n Locus tag: ctg1_3830<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 8,794 - 9,144,\n (total: 351 nt)<br>\n <br>\n \n</div>\n<...
"start": 8794
},
{
"end": 9432,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3831",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3831</strong><br>\n \n <br>\n Locus tag: ctg1_3831<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 9,292 - 9,432,\n (total: 141 nt)<br>\n <br>\n \n</div>\n<...
"start": 9292
},
{
"end": 11477,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3832",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3832</strong><br>\n \n <br>\n Locus tag: ctg1_3832<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 9,498 - 11,477,\n (total: 1980 nt)<br>\n <br>\n \n</div>\...
"start": 9498
},
{
"end": 12238,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3833",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3833</strong><br>\n \n <br>\n Locus tag: ctg1_3833<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 11,501 - 12,238,\n (total: 738 nt)<br>\n <br>\n \n</div>\...
"start": 11501
},
{
"end": 13843,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3834",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3834</strong><br>\n \n <br>\n Locus tag: ctg1_3834<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 12,632 - 13,843,\n (total: 1212 nt)<br>\n <br>\n \n</div>...
"start": 12632
},
{
"end": 15098,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3835",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3835</strong><br>\n \n <br>\n Locus tag: ctg1_3835<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 13,905 - 15,098,\n (total: 1194 nt)<br>\n <br>\n \n</div>...
"start": 13905
},
{
"end": 16003,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3836",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3836</strong><br>\n \n <br>\n Locus tag: ctg1_3836<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 15,617 - 16,003,\n (total: 387 nt)<br>\n <br>\n \n</div>\...
"start": 15617
},
{
"end": 16414,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3837",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3837</strong><br>\n \n <br>\n Locus tag: ctg1_3837<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 16,136 - 16,414,\n (total: 279 nt)<br>\n <br>\n \n</div>\...
"start": 16136
},
{
"end": 17228,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3838",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3838</strong><br>\n \n <br>\n Locus tag: ctg1_3838<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 16,551 - 17,228,\n (total: 678 nt)<br>\n <br>\n \n</div>\...
"start": 16551
},
{
"end": 18874,
"strand": 1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3839",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3839</strong><br>\n \n <br>\n Locus tag: ctg1_3839<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 17,390 - 18,874,\n (total: 1485 nt)<br>\n <br>\n \n bios...
"start": 17390
},
{
"end": 19875,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3840",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3840</strong><br>\n \n <br>\n Locus tag: ctg1_3840<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 18,964 - 19,875,\n (total: 912 nt)<br>\n <br>\n \n</div>\...
"start": 18964
},
{
"end": 28529,
"strand": -1,
"type": "biosynthetic",
"locus_tag": "ctg1_3841",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3841</strong><br>\n \n <br>\n Locus tag: ctg1_3841<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 20,001 - 28,529,\n (total: 8529 nt)<br>\n <br>\n \n bios...
"start": 20001
},
{
"end": 28973,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3842",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3842</strong><br>\n \n <br>\n Locus tag: ctg1_3842<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 28,770 - 28,973,\n (total: 204 nt)<br>\n <br>\n \n</div>\...
"start": 28770
},
{
"end": 29551,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3843",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3843</strong><br>\n \n <br>\n Locus tag: ctg1_3843<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 29,198 - 29,551,\n (total: 354 nt)<br>\n <br>\n \n</div>\...
"start": 29198
},
{
"end": 29721,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3844",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3844</strong><br>\n \n <br>\n Locus tag: ctg1_3844<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 29,548 - 29,721,\n (total: 174 nt)<br>\n <br>\n \n</div>\...
"start": 29548
},
{
"end": 33138,
"strand": 1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3845",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3845</strong><br>\n \n <br>\n Locus tag: ctg1_3845<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 29,863 - 33,138,\n (total: 3276 nt)<br>\n <br>\n \n bios...
"start": 29863
},
{
"end": 34354,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3846",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3846</strong><br>\n \n <br>\n Locus tag: ctg1_3846<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 33,266 - 34,354,\n (total: 1089 nt)<br>\n <br>\n \n</div>...
"start": 33266
},
{
"end": 35608,
"strand": 1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3847",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3847</strong><br>\n \n <br>\n Locus tag: ctg1_3847<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 34,754 - 35,608,\n (total: 855 nt)<br>\n <br>\n \n biosy...
"start": 34754
},
{
"end": 36188,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3848",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3848</strong><br>\n \n <br>\n Locus tag: ctg1_3848<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 36,003 - 36,188,\n (total: 186 nt)<br>\n <br>\n \n</div>\...
"start": 36003
},
{
"end": 36870,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3849",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3849</strong><br>\n \n <br>\n Locus tag: ctg1_3849<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 36,256 - 36,870,\n (total: 615 nt)<br>\n <br>\n \n</div>\...
"start": 36256
},
{
"end": 38782,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3850",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3850</strong><br>\n \n <br>\n Locus tag: ctg1_3850<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 37,184 - 38,782,\n (total: 1599 nt)<br>\n <br>\n \n</div>...
"start": 37184
},
{
"end": 40131,
"strand": -1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3851",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3851</strong><br>\n \n <br>\n Locus tag: ctg1_3851<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 38,815 - 40,131,\n (total: 1317 nt)<br>\n <br>\n \n bios...
"start": 38815
},
{
"end": 41147,
"strand": 1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3852",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3852</strong><br>\n \n <br>\n Locus tag: ctg1_3852<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 40,275 - 41,147,\n (total: 873 nt)<br>\n <br>\n \n biosy...
"start": 40275
},
{
"end": 42796,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3853",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3853</strong><br>\n \n <br>\n Locus tag: ctg1_3853<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 41,207 - 42,796,\n (total: 1590 nt)<br>\n <br>\n \n</div>...
"start": 41207
},
{
"end": 44221,
"strand": 1,
"type": "regulatory",
"locus_tag": "ctg1_3854",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3854</strong><br>\n \n <br>\n Locus tag: ctg1_3854<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 43,007 - 44,221,\n (total: 1215 nt)<br>\n <br>\n \n regu...
"start": 43007
},
{
"end": 46162,
"strand": -1,
"type": "transport",
"locus_tag": "ctg1_3855",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3855</strong><br>\n \n <br>\n Locus tag: ctg1_3855<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 44,339 - 46,162,\n (total: 1824 nt)<br>\n <br>\n \n tran...
"start": 44339
},
{
"end": 47488,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3856",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3856</strong><br>\n \n <br>\n Locus tag: ctg1_3856<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 46,694 - 47,488,\n (total: 795 nt)<br>\n <br>\n \n</div>\...
"start": 46694
},
{
"end": 47781,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3857",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3857</strong><br>\n \n <br>\n Locus tag: ctg1_3857<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 47,473 - 47,781,\n (total: 309 nt)<br>\n <br>\n \n</div>\...
"start": 47473
}
],
"anchor": "r1c1",
"start": 1
}
]
}
];
var all_regions = {
"r1c1": {
"ttaCodons": [],
"products": [
"NRPS-like",
"T1PKS"
],
"end": 48529,
"clusters": [
{
"product": "CC 1: chemical_hybrid",
"end": 48528,
"tool": "",
"height": 0,
"isSuperCluster": true,
"neighbouring_start": 0,
"start": 1,
"neighbouring_end": 48529
},
{
"product": "NRPS-like",
"end": 28529,
"tool": "rule-based-clusters",
"height": 2,
"isSuperCluster": false,
"neighbouring_start": 0,
"start": 20000,
"neighbouring_end": 48529
},
{
"product": "T1PKS",
"end": 28529,
"tool": "rule-based-clusters",
"height": 4,
"isSuperCluster": false,
"neighbouring_start": 0,
"start": 20000,
"neighbouring_end": 48529
}
],
"idx": 1,
"type": "NRPS-like,T1PKS",
"orfs": [
{
"end": 2382,
"strand": 1,
"type": "transport",
"locus_tag": "ctg1_3821",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3821</strong><br>\n \n <br>\n Locus tag: ctg1_3821<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 1,624 - 2,382,\n (total: 759 nt)<br>\n <br>\n \n transport (smco...
"start": 1624
},
{
"end": 3532,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3822",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3822</strong><br>\n \n <br>\n Locus tag: ctg1_3822<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 2,435 - 3,532,\n (total: 1098 nt)<br>\n <br>\n \n</div>\n<div cla...
"start": 2435
},
{
"end": 3826,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3823",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3823</strong><br>\n \n <br>\n Locus tag: ctg1_3823<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 3,650 - 3,826,\n (total: 177 nt)<br>\n <br>\n \n</div>\n<div clas...
"start": 3650
},
{
"end": 5257,
"strand": -1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3824",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3824</strong><br>\n \n <br>\n Locus tag: ctg1_3824<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 3,887 - 5,257,\n (total: 1371 nt)<br>\n <br>\n \n biosynthetic-a...
"start": 3887
},
{
"end": 5782,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3825",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3825</strong><br>\n \n <br>\n Locus tag: ctg1_3825<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 5,387 - 5,782,\n (total: 396 nt)<br>\n <br>\n \n</div>\n<div clas...
"start": 5387
},
{
"end": 7582,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3826",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3826</strong><br>\n \n <br>\n Locus tag: ctg1_3826<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 5,897 - 7,582,\n (total: 1686 nt)<br>\n <br>\n \n</div>\n<div cla...
"start": 5897
},
{
"end": 7979,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3827",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3827</strong><br>\n \n <br>\n Locus tag: ctg1_3827<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 7,707 - 7,979,\n (total: 273 nt)<br>\n <br>\n \n</div>\n<div clas...
"start": 7707
},
{
"end": 8266,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3828",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3828</strong><br>\n \n <br>\n Locus tag: ctg1_3828<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 7,988 - 8,266,\n (total: 279 nt)<br>\n <br>\n \n</div>\n<div clas...
"start": 7988
},
{
"end": 8698,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3829",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3829</strong><br>\n \n <br>\n Locus tag: ctg1_3829<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 8,309 - 8,698,\n (total: 390 nt)<br>\n <br>\n \n</div>\n<div clas...
"start": 8309
},
{
"end": 9144,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3830",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3830</strong><br>\n \n <br>\n Locus tag: ctg1_3830<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 8,794 - 9,144,\n (total: 351 nt)<br>\n <br>\n \n</div>\n<div clas...
"start": 8794
},
{
"end": 9432,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3831",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3831</strong><br>\n \n <br>\n Locus tag: ctg1_3831<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 9,292 - 9,432,\n (total: 141 nt)<br>\n <br>\n \n</div>\n<div clas...
"start": 9292
},
{
"end": 11477,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3832",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3832</strong><br>\n \n <br>\n Locus tag: ctg1_3832<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 9,498 - 11,477,\n (total: 1980 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 9498
},
{
"end": 12238,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3833",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3833</strong><br>\n \n <br>\n Locus tag: ctg1_3833<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 11,501 - 12,238,\n (total: 738 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 11501
},
{
"end": 13843,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3834",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3834</strong><br>\n \n <br>\n Locus tag: ctg1_3834<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 12,632 - 13,843,\n (total: 1212 nt)<br>\n <br>\n \n</div>\n<div c...
"start": 12632
},
{
"end": 15098,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3835",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3835</strong><br>\n \n <br>\n Locus tag: ctg1_3835<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 13,905 - 15,098,\n (total: 1194 nt)<br>\n <br>\n \n</div>\n<div c...
"start": 13905
},
{
"end": 16003,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3836",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3836</strong><br>\n \n <br>\n Locus tag: ctg1_3836<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 15,617 - 16,003,\n (total: 387 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 15617
},
{
"end": 16414,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3837",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3837</strong><br>\n \n <br>\n Locus tag: ctg1_3837<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 16,136 - 16,414,\n (total: 279 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 16136
},
{
"end": 17228,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3838",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3838</strong><br>\n \n <br>\n Locus tag: ctg1_3838<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 16,551 - 17,228,\n (total: 678 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 16551
},
{
"end": 18874,
"strand": 1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3839",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3839</strong><br>\n \n <br>\n Locus tag: ctg1_3839<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 17,390 - 18,874,\n (total: 1485 nt)<br>\n <br>\n \n biosynthetic...
"start": 17390
},
{
"end": 19875,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3840",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3840</strong><br>\n \n <br>\n Locus tag: ctg1_3840<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 18,964 - 19,875,\n (total: 912 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 18964
},
{
"end": 28529,
"strand": -1,
"type": "biosynthetic",
"locus_tag": "ctg1_3841",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3841</strong><br>\n \n <br>\n Locus tag: ctg1_3841<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 20,001 - 28,529,\n (total: 8529 nt)<br>\n <br>\n \n biosynthetic...
"start": 20001
},
{
"end": 28973,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3842",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3842</strong><br>\n \n <br>\n Locus tag: ctg1_3842<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 28,770 - 28,973,\n (total: 204 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 28770
},
{
"end": 29551,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3843",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3843</strong><br>\n \n <br>\n Locus tag: ctg1_3843<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 29,198 - 29,551,\n (total: 354 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 29198
},
{
"end": 29721,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3844",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3844</strong><br>\n \n <br>\n Locus tag: ctg1_3844<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 29,548 - 29,721,\n (total: 174 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 29548
},
{
"end": 33138,
"strand": 1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3845",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3845</strong><br>\n \n <br>\n Locus tag: ctg1_3845<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 29,863 - 33,138,\n (total: 3276 nt)<br>\n <br>\n \n biosynthetic...
"start": 29863
},
{
"end": 34354,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3846",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3846</strong><br>\n \n <br>\n Locus tag: ctg1_3846<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 33,266 - 34,354,\n (total: 1089 nt)<br>\n <br>\n \n</div>\n<div c...
"start": 33266
},
{
"end": 35608,
"strand": 1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3847",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3847</strong><br>\n \n <br>\n Locus tag: ctg1_3847<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 34,754 - 35,608,\n (total: 855 nt)<br>\n <br>\n \n biosynthetic-...
"start": 34754
},
{
"end": 36188,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3848",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3848</strong><br>\n \n <br>\n Locus tag: ctg1_3848<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 36,003 - 36,188,\n (total: 186 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 36003
},
{
"end": 36870,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3849",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3849</strong><br>\n \n <br>\n Locus tag: ctg1_3849<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 36,256 - 36,870,\n (total: 615 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 36256
},
{
"end": 38782,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3850",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3850</strong><br>\n \n <br>\n Locus tag: ctg1_3850<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 37,184 - 38,782,\n (total: 1599 nt)<br>\n <br>\n \n</div>\n<div c...
"start": 37184
},
{
"end": 40131,
"strand": -1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3851",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3851</strong><br>\n \n <br>\n Locus tag: ctg1_3851<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 38,815 - 40,131,\n (total: 1317 nt)<br>\n <br>\n \n biosynthetic...
"start": 38815
},
{
"end": 41147,
"strand": 1,
"type": "biosynthetic-additional",
"locus_tag": "ctg1_3852",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3852</strong><br>\n \n <br>\n Locus tag: ctg1_3852<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 40,275 - 41,147,\n (total: 873 nt)<br>\n <br>\n \n biosynthetic-...
"start": 40275
},
{
"end": 42796,
"strand": -1,
"type": "other",
"locus_tag": "ctg1_3853",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3853</strong><br>\n \n <br>\n Locus tag: ctg1_3853<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 41,207 - 42,796,\n (total: 1590 nt)<br>\n <br>\n \n</div>\n<div c...
"start": 41207
},
{
"end": 44221,
"strand": 1,
"type": "regulatory",
"locus_tag": "ctg1_3854",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3854</strong><br>\n \n <br>\n Locus tag: ctg1_3854<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 43,007 - 44,221,\n (total: 1215 nt)<br>\n <br>\n \n regulatory (...
"start": 43007
},
{
"end": 46162,
"strand": -1,
"type": "transport",
"locus_tag": "ctg1_3855",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3855</strong><br>\n \n <br>\n Locus tag: ctg1_3855<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 44,339 - 46,162,\n (total: 1824 nt)<br>\n <br>\n \n transport (s...
"start": 44339
},
{
"end": 47488,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3856",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3856</strong><br>\n \n <br>\n Locus tag: ctg1_3856<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 46,694 - 47,488,\n (total: 795 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 46694
},
{
"end": 47781,
"strand": 1,
"type": "other",
"locus_tag": "ctg1_3857",
"description": "<div class=\"focus-intro\">\n <strong>ctg1_3857</strong><br>\n \n <br>\n Locus tag: ctg1_3857<br>\n Protein ID: None<br>\n Gene: None<br>\n \n Location: 47,473 - 47,781,\n (total: 309 nt)<br>\n <br>\n \n</div>\n<div cl...
"start": 47473
}
],
"anchor": "r1c1",
"start": 1
},
"order": [
"r1c1"
]
};
var details_data = {
"r1c1": {
"id": "r1c1",
"orfs": [
{
"id": "ctg1_3841",
"sequence": "MSGNFSNFVDLLSYRASKQSEKIVFTFLGDGERVSDSLTYYQLDERAKAIAATLQSLNAQGERALLLYQPGLEFICAFFGCLYAGVIAVPAYPPRANRSLERLQAIVSDAQANFALTTEALVSTIEGRLTKYLSTEAIRCLTTDNIDSHSASQWQPINPSEDNLAFLQYTSGSTGMPKGVMVSHGNLVHNSSLINRCFRDTAESKGVSWLPPYHDMGLIGG...
"domains": [
{
"type": "CAL_domain",
"start": 38,
"end": 484,
"predictions": [
[
"Minowa",
"NH2"
]
],
"napdoslink": "",
"blastlink": "http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins&PROGRAM=blastp&BLAST_PROGRAMS=blastp&QUERY=TYYQLDERAKAIAATLQSLNAQGERALLLYQPGLEFICAFFGCLYAGVIAVPAYPPRANRSLERLQAIVSDAQANFALTTEALVSTIEGRLTKYLSTEAIRCL...
"sequence": "TYYQLDERAKAIAATLQSLNAQGERALLLYQPGLEFICAFFGCLYAGVIAVPAYPPRANRSLERLQAIVSDAQANFALTTEALVSTIEGRLTKYLSTEAIRCLTTDNIDSHSASQWQPINPSEDNLAFLQYTSGSTGMPKGVMVSHGNLVHNSSLINRCFRDTAESKGVSWLPPYHDMGLIGGILQPIYVGASQALMPPVAFLQRPLRWLQTI...
"dna_sequence": "ATGAGCGGAAACTTCTCCAATTTTGTAGACCTATTAAGCTATAGAGCCTCGAAACAATCTGAAAAAATCGTTTTCACCTTTCTAGGCGACGGGGAAAGAGTAAGCGACAGCCTTACCTATTATCAGTTAGACGAACGAGCAAAAGCGATCGCAGCAACGCTTCAATCCCTTAACGCTCAAGGCGAACGTGCATTATTACTCTATCAGCC...
},
{
"type": "ACP",
"start": 606,
"end": 676,
"predictions": [],
"napdoslink": "",
"blastlink": "http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins&PROGRAM=blastp&BLAST_PROGRAMS=blastp&QUERY=AWLVSNIAGRLGISPQEIDVREPFASYGLDSVQAVRLSAELEDWLGRKLSPTLAYDYPSIATLAAYLGQE&LINK_LOC=protein&PAGE_TY...
"sequence": "AWLVSNIAGRLGISPQEIDVREPFASYGLDSVQAVRLSAELEDWLGRKLSPTLAYDYPSIATLAAYLGQE",
"dna_sequence": "ATGAGCGGAAACTTCTCCAATTTTGTAGACCTATTAAGCTATAGAGCCTCGAAACAATCTGAAAAAATCGTTTTCACCTTTCTAGGCGACGGGGAAAGAGTAAGCGACAGCCTTACCTATTATCAGTTAGACGAACGAGCAAAAGCGATCGCAGCAACGCTTCAATCCCTTAACGCTCAAGGCGAACGTGCATTATTACTCTATCAGCC...
},
{
"type": "PKS_KS",
"start": 712,
"end": 1118,
"predictions": [],
"napdoslink": "http://napdos.ucsd.edu/cgi-bin/process_request.cgi?query_type=aa&ref_seq_file=all_KS_public_12062011.faa&Sequence=%3EKS_domain_from_antiSMASH%0DIAVIGIGCRFPGANNPEAFWKLLCEGKDAITQVNRRWEGNDWGGFLERVDQFDPQFFGI...
"blastlink": "http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins&PROGRAM=blastp&BLAST_PROGRAMS=blastp&QUERY=IAVIGIGCRFPGANNPEAFWKLLCEGKDAITQVNRRWEGNDWGGFLERVDQFDPQFFGISPREAHEMDPQQRLLLEVSWEALESAGIAANQLAGSATGVFVGI...
"sequence": "IAVIGIGCRFPGANNPEAFWKLLCEGKDAITQVNRRWEGNDWGGFLERVDQFDPQFFGISPREAHEMDPQQRLLLEVSWEALESAGIAANQLAGSATGVFVGISSSDYSQIRLRHQLEPDAYAGTGNAHSIAANRLSYFFDLRGPSLTVDTACSSSLVAVHLAAKSLQNGECDRALVGGVNLILSPELTQTFTQAGMISSDGRCKTFDASADG...
"dna_sequence": "ATGAGCGGAAACTTCTCCAATTTTGTAGACCTATTAAGCTATAGAGCCTCGAAACAATCTGAAAAAATCGTTTTCACCTTTCTAGGCGACGGGGAAAGAGTAAGCGACAGCCTTACCTATTATCAGTTAGACGAACGAGCAAAAGCGATCGCAGCAACGCTTCAATCCCTTAACGCTCAAGGCGAACGTGCATTATTACTCTATCAGCC...
},
{
"type": "PKS_AT",
"start": 1244,
"end": 1546,
"predictions": [
[
"PKS signature",
( run in 2.831 seconds using v1.01-cache-2.11-cpan-81fc1098f69 )