Bio-BPWrapper
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test-files/test-bioseq.gb view on Meta::CPAN
/protein_id="AAC66566.1"
/translation="MYGDNSYIQNYYIKKVLMSMFFIFSLIFLILSILDISWGQRAVE
DERNKLRISFIFDISRSMLSVDEGKIINRLESAKNMISLILSNFENAEYSLTIFKGKS
KLVLPFSKDKNSLNKMLNYIEPDLISSPGSFLGDAVFSVISNVPDDSYYNFLVILTDG
DDWGENNYYRFSKFVNNLKLESFVVGIGGSNPVLFNQNLSIKDKNGNLVKTGINEENL
LLLASSLKGSYYNLYLKGINFVVNDIRNGIIRRTSNDIILVDVSRYKIFLVISLLFIF
MYLFVRMIKWDETF"
gene complement(175081..176082)
/locus_tag="BB_0173"
/note="von Willebrand factor type A domain protein; this
gene contains a nucleotide ambiguity which may be the
result of a sequencing error; identified by match to
protein family HMM PF00092"
/pseudo
gene complement(176069..176974)
/locus_tag="BB_0174"
CDS complement(176069..176974)
/locus_tag="BB_0174"
/codon_start=1
/transl_table=11
/product="conserved hypothetical protein"
/protein_id="AAC66564.1"
/translation="MKRAVSNLFLFLTLSLYSYEIKNEIFMPTRYYVGDSVDFKVSLI
LNDGEEFSPVDFKDINIKDEFVEVNSISFNNTTNEIIVNFVSFYIGSSSLPSIYIGDV
ISNGKKNKVILKNIKINTDKLVSNNSDFKIKNIEGVLFIPGTSTYLFLFIFVLFLIPY
LVIKLLKLLNRLLIYLIVKHGLKKPYKVLQRQFVILSKYVRDGGDQSAFYNLINSSLR
VYLSKKTGFDFNAITTTEISIILQDLKVPYEIRSIFINTLRLSDFSKFSGVDLVFDSL
SFVLEDLRTAASNFEEFNRGANVNI"
gene complement(176978..177853)
/locus_tag="BB_0175"
CDS complement(176978..177853)
/locus_tag="BB_0175"
/codon_start=1
/transl_table=11
/product="conserved hypothetical protein"
/protein_id="AAC66560.1"
/translation="MIQDNEISSSTKTRIKALKFFSRKMLSELNFGGYRSIFKGLGLE
FHEFRPYEDSDDARFIDWNVSSKADSIFSKVFKEDRGMNLHLLVDNSLSMSLGDKVNK
KDVQDLLVSIFAHMAFFNNDKIGVTFFSSGTDKFIPSSKGHSHLGLILSETINRNLKP
GSSLAYIFKNTAEYYKKRSLVIIISDFKANAYFKSLNVLSKRHNVIAIRISDFFDENF
PKIGTLICEDIETGENFLVSGFSKSTLSGYKNYWTLDKIKWKKECIKKNISFIEIDTK
EDVFKKLKILLKKGQ"
gene complement(177868..178860)
/locus_tag="BB_0176"
CDS complement(177868..178860)
/locus_tag="BB_0176"
/note="identified by match to protein family HMM PF07726;
match to protein family HMM PF07728"
/codon_start=1
/transl_table=11
/product="ATPase family associated with various cellular
activities (AAA), putative"
/protein_id="AAC66559.1"
/translation="MKSGFQIDSEVENALHLINKFRREVATRVLGQKEMIDAILMGLL
TDGHVLLEGVPGLAKTLAIQTVSDVLDLEFKRIQFTPDLLPSDLTGNMVYKSATGTFK
VRKGPVFSNVILADEINRAPAKVQSALLEAMGERQVTLGDETHRLPDPFFVLATQNPI
EQEGTYNLPESQLDRFLLKVNVHYPSVQDEVRLLKIFSVDGRLENIKVAKVMNAYSLA
DIKRTVGRVKVDDKIMLYIVTLISASRERDKKTYPFAKYIEFGASPRASLSLLKCARV
NALYEGRIFVLPEDVKAVAYSVLRHRITPSYEAEVEEMSIDDIIRMLLSAVALP"
gene complement(178917..179543)
/gene="gidB"
/locus_tag="BB_0177"
CDS complement(178917..179543)
/gene="gidB"
/locus_tag="BB_0177"
/EC_number="2.1.-.-"
/note="identified by match to protein family HMM PF02527;
match to protein family HMM TIGR00138"
/codon_start=1
/transl_table=11
/product="16S rRNA methyltransferase GidB"
/protein_id="AAC66558.1"
/translation="MISDIEFALSEHNFQFAYKDLQKINLYIKRILLLNTRFNLISNS
NSNFNSILNLHVIDSLLGLSTVKEINPSEVLDVGSGAGFPGIILAIFDSSRKYYLLER
SKKKSTFLKMIKLELDLENVKILEYEIEKEKKKYEFITIRAFRNMNEYALILKNLLKG
GGLIMAYKGKFDRINLEVNQIKNLFSKIEVKSLNSKLRVDRNLVLLYR"
gene complement(179540..181405)
/gene="gidA"
/locus_tag="BB_0178"
CDS complement(179540..181405)
/gene="gidA"
/locus_tag="BB_0178"
/note="identified by match to protein family HMM PF01134;
match to protein family HMM TIGR00136"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA"
/protein_id="AAC66557.1"
/translation="MDFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCN
PAIGGLAKGNMVREIDALGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQT
KAKETLERQDNLDLFQDTVVDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGK
IFIGEYRADMGRLAEFSAYGLDKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFG
DSDIIPFSFSNGKLDKSQLSCYVTYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPS
IEDKIVKFKDKDRHQIFIEPEGFNTEEMYLNGLSSSLPENIQQKLINSIEGLEHAVIT
RPGYAVEYDYINPIELYPNLESKRVKGLFIAGQTNGSSGYEEAAAQGLMAGINAALRL
QNKKPMILTRTSSYIGVLIDDLVTKGTKEPYRMFTSRAEHRLNLRHDTSDKRLIKIGY
DLGLVDEKRYSRYLFKESRVEEIKELLKQRRLSLKDVVDEQLKKHVSKDFYHILKDPS
ISLDNLIKIDPSLSDSKVILEQVELDVKYEGYINRQKDLIKRLDNLELVKLPFDFNYE
IIEGLSREAREKFSKIQPATLAQASRIPGIRSTDITVLLIYFSNPKNKVVINFSL"
gene complement(181408..182802)
/gene="trmE"
/locus_tag="BB_0179"
CDS complement(181408..182802)
/gene="trmE"
/locus_tag="BB_0179"
/note="identified by match to protein family HMM PF01926;
match to protein family HMM PF08477; match to protein
family HMM TIGR00231; match to protein family HMM
TIGR00450"
/codon_start=1
/transl_table=11
/product="tRNA modification GTPase TrmE"
/protein_id="AAC66556.1"
/translation="MSKFFERDDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNH
SALNSASGNTIHYGYILDSENGCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKK
IIDLFLKSGFRMAEPGEFTLRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGA
LFVKIDAIKKSILNFLSAVSVYLDYEVDDHEISIPFDLILSSKAELKKLINSYKVYEK
IDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD
TAGLRDADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILF
VLNKIDLKINKSTEEFVRSKVLNSSNLIMISTKNLEGIDILYDKIRALISYERVEIGL
DDIIISSNRQMQLLEKAYALILDLLSKIDRQVSYDMLAFDAYEIINCLGEITGEVSSE
DVLDNMFKNFCLGK"
gene 182886..183380
/locus_tag="BB_0180"
CDS 182886..183380
/locus_tag="BB_0180"
/codon_start=1
/transl_table=11
/product="FlbF protein"
/protein_id="AAC66580.1"
/translation="MKTKLETELKEVLKKELLLVEEIYNSYLKIKEYIDNKNEIGLKE
VANKTKILLESFKEIESKRDEIWKKFTKNENFKSTYEAVEKLTTIYKQEIYDYLHKLK
IGILNIKNLNYIIQNYVNTSLDMLSIIFQDIQESVENVTYKNPYGPKIGRSNEASVLI
NKKL"
gene 183392..185275
/gene="flgK"
/locus_tag="BB_0181"
/note="flagellar hook-associated protein FlgK; this gene
contains a frame shift which may be the result of a
sequencing error; identified by match to protein family
( run in 0.585 second using v1.01-cache-2.11-cpan-5735350b133 )