Bio-BPWrapper

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test-files/test-bioseq.gb  view on Meta::CPAN

                     /protein_id="AAC66566.1"
                     /translation="MYGDNSYIQNYYIKKVLMSMFFIFSLIFLILSILDISWGQRAVE
                     DERNKLRISFIFDISRSMLSVDEGKIINRLESAKNMISLILSNFENAEYSLTIFKGKS
                     KLVLPFSKDKNSLNKMLNYIEPDLISSPGSFLGDAVFSVISNVPDDSYYNFLVILTDG
                     DDWGENNYYRFSKFVNNLKLESFVVGIGGSNPVLFNQNLSIKDKNGNLVKTGINEENL
                     LLLASSLKGSYYNLYLKGINFVVNDIRNGIIRRTSNDIILVDVSRYKIFLVISLLFIF
                     MYLFVRMIKWDETF"
     gene            complement(175081..176082)
                     /locus_tag="BB_0173"
                     /note="von Willebrand factor type A domain protein; this
                     gene contains a nucleotide ambiguity which may be the
                     result of a sequencing error; identified by match to
                     protein family HMM PF00092"
                     /pseudo
     gene            complement(176069..176974)
                     /locus_tag="BB_0174"
     CDS             complement(176069..176974)
                     /locus_tag="BB_0174"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="AAC66564.1"
                     /translation="MKRAVSNLFLFLTLSLYSYEIKNEIFMPTRYYVGDSVDFKVSLI
                     LNDGEEFSPVDFKDINIKDEFVEVNSISFNNTTNEIIVNFVSFYIGSSSLPSIYIGDV
                     ISNGKKNKVILKNIKINTDKLVSNNSDFKIKNIEGVLFIPGTSTYLFLFIFVLFLIPY
                     LVIKLLKLLNRLLIYLIVKHGLKKPYKVLQRQFVILSKYVRDGGDQSAFYNLINSSLR
                     VYLSKKTGFDFNAITTTEISIILQDLKVPYEIRSIFINTLRLSDFSKFSGVDLVFDSL
                     SFVLEDLRTAASNFEEFNRGANVNI"
     gene            complement(176978..177853)
                     /locus_tag="BB_0175"
     CDS             complement(176978..177853)
                     /locus_tag="BB_0175"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="AAC66560.1"
                     /translation="MIQDNEISSSTKTRIKALKFFSRKMLSELNFGGYRSIFKGLGLE
                     FHEFRPYEDSDDARFIDWNVSSKADSIFSKVFKEDRGMNLHLLVDNSLSMSLGDKVNK
                     KDVQDLLVSIFAHMAFFNNDKIGVTFFSSGTDKFIPSSKGHSHLGLILSETINRNLKP
                     GSSLAYIFKNTAEYYKKRSLVIIISDFKANAYFKSLNVLSKRHNVIAIRISDFFDENF
                     PKIGTLICEDIETGENFLVSGFSKSTLSGYKNYWTLDKIKWKKECIKKNISFIEIDTK
                     EDVFKKLKILLKKGQ"
     gene            complement(177868..178860)
                     /locus_tag="BB_0176"
     CDS             complement(177868..178860)
                     /locus_tag="BB_0176"
                     /note="identified by match to protein family HMM PF07726;
                     match to protein family HMM PF07728"
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase family associated with various cellular
                     activities (AAA), putative"
                     /protein_id="AAC66559.1"
                     /translation="MKSGFQIDSEVENALHLINKFRREVATRVLGQKEMIDAILMGLL
                     TDGHVLLEGVPGLAKTLAIQTVSDVLDLEFKRIQFTPDLLPSDLTGNMVYKSATGTFK
                     VRKGPVFSNVILADEINRAPAKVQSALLEAMGERQVTLGDETHRLPDPFFVLATQNPI
                     EQEGTYNLPESQLDRFLLKVNVHYPSVQDEVRLLKIFSVDGRLENIKVAKVMNAYSLA
                     DIKRTVGRVKVDDKIMLYIVTLISASRERDKKTYPFAKYIEFGASPRASLSLLKCARV
                     NALYEGRIFVLPEDVKAVAYSVLRHRITPSYEAEVEEMSIDDIIRMLLSAVALP"
     gene            complement(178917..179543)
                     /gene="gidB"
                     /locus_tag="BB_0177"
     CDS             complement(178917..179543)
                     /gene="gidB"
                     /locus_tag="BB_0177"
                     /EC_number="2.1.-.-"
                     /note="identified by match to protein family HMM PF02527;
                     match to protein family HMM TIGR00138"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA methyltransferase GidB"
                     /protein_id="AAC66558.1"
                     /translation="MISDIEFALSEHNFQFAYKDLQKINLYIKRILLLNTRFNLISNS
                     NSNFNSILNLHVIDSLLGLSTVKEINPSEVLDVGSGAGFPGIILAIFDSSRKYYLLER
                     SKKKSTFLKMIKLELDLENVKILEYEIEKEKKKYEFITIRAFRNMNEYALILKNLLKG
                     GGLIMAYKGKFDRINLEVNQIKNLFSKIEVKSLNSKLRVDRNLVLLYR"
     gene            complement(179540..181405)
                     /gene="gidA"
                     /locus_tag="BB_0178"
     CDS             complement(179540..181405)
                     /gene="gidA"
                     /locus_tag="BB_0178"
                     /note="identified by match to protein family HMM PF01134;
                     match to protein family HMM TIGR00136"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine 5-carboxymethylaminomethyl
                     modification enzyme GidA"
                     /protein_id="AAC66557.1"
                     /translation="MDFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCN
                     PAIGGLAKGNMVREIDALGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQT
                     KAKETLERQDNLDLFQDTVVDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGK
                     IFIGEYRADMGRLAEFSAYGLDKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFG
                     DSDIIPFSFSNGKLDKSQLSCYVTYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPS
                     IEDKIVKFKDKDRHQIFIEPEGFNTEEMYLNGLSSSLPENIQQKLINSIEGLEHAVIT
                     RPGYAVEYDYINPIELYPNLESKRVKGLFIAGQTNGSSGYEEAAAQGLMAGINAALRL
                     QNKKPMILTRTSSYIGVLIDDLVTKGTKEPYRMFTSRAEHRLNLRHDTSDKRLIKIGY
                     DLGLVDEKRYSRYLFKESRVEEIKELLKQRRLSLKDVVDEQLKKHVSKDFYHILKDPS
                     ISLDNLIKIDPSLSDSKVILEQVELDVKYEGYINRQKDLIKRLDNLELVKLPFDFNYE
                     IIEGLSREAREKFSKIQPATLAQASRIPGIRSTDITVLLIYFSNPKNKVVINFSL"
     gene            complement(181408..182802)
                     /gene="trmE"
                     /locus_tag="BB_0179"
     CDS             complement(181408..182802)
                     /gene="trmE"
                     /locus_tag="BB_0179"
                     /note="identified by match to protein family HMM PF01926;
                     match to protein family HMM PF08477; match to protein
                     family HMM TIGR00231; match to protein family HMM
                     TIGR00450"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA modification GTPase TrmE"
                     /protein_id="AAC66556.1"
                     /translation="MSKFFERDDDIVALATPFLSSALCVIRSSGASSISKFSKIFSNH
                     SALNSASGNTIHYGYILDSENGCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKK
                     IIDLFLKSGFRMAEPGEFTLRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGA
                     LFVKIDAIKKSILNFLSAVSVYLDYEVDDHEISIPFDLILSSKAELKKLINSYKVYEK
                     IDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD
                     TAGLRDADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILF
                     VLNKIDLKINKSTEEFVRSKVLNSSNLIMISTKNLEGIDILYDKIRALISYERVEIGL
                     DDIIISSNRQMQLLEKAYALILDLLSKIDRQVSYDMLAFDAYEIINCLGEITGEVSSE
                     DVLDNMFKNFCLGK"
     gene            182886..183380
                     /locus_tag="BB_0180"
     CDS             182886..183380
                     /locus_tag="BB_0180"
                     /codon_start=1
                     /transl_table=11
                     /product="FlbF protein"
                     /protein_id="AAC66580.1"
                     /translation="MKTKLETELKEVLKKELLLVEEIYNSYLKIKEYIDNKNEIGLKE
                     VANKTKILLESFKEIESKRDEIWKKFTKNENFKSTYEAVEKLTTIYKQEIYDYLHKLK
                     IGILNIKNLNYIIQNYVNTSLDMLSIIFQDIQESVENVTYKNPYGPKIGRSNEASVLI
                     NKKL"
     gene            183392..185275
                     /gene="flgK"
                     /locus_tag="BB_0181"
                     /note="flagellar hook-associated protein FlgK; this gene
                     contains a frame shift which may be the result of a
                     sequencing error; identified by match to protein family



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