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test/hmmer_double_short.stdout view on Meta::CPAN
# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: double.hmm
# target sequence database: short.sto
# max ASCII text line length: unlimited
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Meredith169AA [M=6705]
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 14785.9 16.7 0 13218.3 0.0 2.0 2 Ailuropoda_melanoleuca
0 12909.9 47.3 0 4943.5 15.5 3.0 3 Abrocoma_bennettii
0 12562.0 71.7 0 11808.5 45.4 2.8 2 Aepyprymnus_rufescens
0 12214.1 81.9 0 5245.2 11.3 4.0 4 Acrobates_pygmaeus
Domain annotation for each sequence (and alignments):
>> Ailuropoda_melanoleuca
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1554.0 29.0 0 0 1 640 [. 1 640 [. 1 643 [. 1.00
2 ! 13218.3 0.0 0 0 767 6705 .] 643 6574 .] 640 6574 .] 1.00
Alignments for each domain:
== domain 1 score: 1554.0 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
cqfrsvmrmdymvyfsfftwilipl+vmcaiyldifyvirnkl+qnfs+sk+tgafygrefktakslflvlflfalswlplsiinci+yfpq++lylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
Ailuropoda_melanoleuca 1 CQFRSVMRMDYMVYFSFFTWILIPLIVMCAIYLDIFYVIRNKLNQNFSGSKDTGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCITYFPQILLYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWL...
9****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 13218.3 bits; conditional E-value: 0
Meredith169AA 767 pdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntnaglYnqsDivahflssSssvidaLqykleGtssltrkRglKlAtalslsnkfvegnhdstiSltkknmeasvtttakvqipilrmnfkqelnGntkskptvsssielkYdfnspklystakGavdhklslesltsyfsiesstkgdikgsvlseysgtiaseastYlnskgtrssvklqgaskv...
df+vlst+n+I+iPAmGNiTYdFSFKS +iTLntn+glYnqsDivahfl+sSssv+daLqykleGtssltrkR lKlAtalslsnkfvegnhdstiSltkknmeasvtt+akvqipilrmnfkqelnGntkskptvs siel+Yd+ns++ ysta+G+v hk++lesltsyfsiesstkgdikgsv+s+ysgtiaseastYlnsk+trssvklqgaskv...
Ailuropoda_melanoleuca 643 KDFQVLSTPNDIFIPAMGNITYDFSFKSGIITLNTNVGLYNQSDIVAHFLTSSSSVTDALQYKLEGTSSLTRKRDLKLATALSLSNKFVEGNHDSTISLTKKNMEASVTTSAKVQIPILRMNFKQELNGNTKSKPTVSASIELTYDLNSAEQYSTATGTVSHKFNLESLTSYFSIESSTKGDIKGSVFSKYSGTIASEASTYLNSKSTRSSVKLQGASKV...
69**************************************************************************************************************************************************************************************************************************...
>> Abrocoma_bennettii
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3876.6 2.8 0 0 1 1789 [. 1 1788 [. 1 1795 [. 1.00
2 ! 4102.0 13.3 0 0 2038 4546 .. 2037 4459 .. 2026 4465 .. 0.99
3 ! 4943.5 15.5 0 0 4778 6705 .] 4691 6619 .] 4683 6619 .] 1.00
Alignments for each domain:
== domain 1 score: 3876.6 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaa...
c+f +m+m+ymv+fsfftwi+iplvvmcaiyl+if+virnklsqn+s+sketgafygref+takslflvlflfal+wlplsiinc++yfp+ +++lgillsh i gnal ilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlc isldrywavsraleynskrtprrikciiltvwliaa...
Abrocoma_bennettii 1 CSFLPTMSMEYMVFFSFFTWIFIPLVVMCAIYLNIFHVIRNKLSQNLSASKETGAFYGREFRTAKSLFLVLFLFALCWLPLSIINCALYFPDDIMFLGILLSHXXXXXXILGNALGILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCXISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAA...
99******************************************************************************************************************************************************************************************************************************...
== domain 2 score: 4102.0 bits; conditional E-value: 0
Meredith169AA 2038 qkvnewfsrsdeiltsddshdggsekidllasdphdaliceservhskpvesniedkifgktyrrkaslpnlshiteitqerpltnklkrkrrttsglhpedfikkvdlavvqktpekinegtdqngqvmnitnnghenetkgdyvqkeknanpteslekesafrtkaepisssisnmelelnihsskapkknrlrrksstrhihalelvvsrnpsppnhtelq...
vnewfsrsde+ ts+d +d + ek+dl asdp++a++c++ r ++ + + ++edk+fgktyrrk sl nlsh + +tqe+plt+++krkrrt s+lhpedfikk+ la +qktpek ++g++q++qv++i nn+ enet+g vq+ +n++p++slekes+ + +ep+sss ++mele+n++ ap+ nrlr++ss+r+++ + spp h elq...
Abrocoma_bennettii 2037 XXVNEWFSRSDEMETSEDGCDWEXEKTDLKASDPQRAVTCATVRGCPSAGKGSVEDKVFGKTYRRKGSLANLSHSAXVTQECPLTSTVKRKRRTLSCLHPEDFIKKAGLAAAQKTPEKDTQGMKQSSQVTSIPNNN-ENETEGVAVQRXQNPSPVQSLEKESVPGMGTEPQSSSGNSMELEWNVCPPGAPQGNRLRKRSSARQVP--------HLSPPGHPELQ...
679**********************************************************************************************************************************985.9*******************************************************************........779********...
== domain 3 score: 4943.5 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssg+ksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPi+AKDLVIEPDVRPaF+s...
Abrocoma_bennettii 4691 XXNSSGMKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSEKWSECARVKSLEAVITNLTQGEEYLFRVVAVNEKGRSDPRSLAVPIIAKDLVIEPDVRPAFSS...
57******************************************************************************************************************************************************************************************************************************...
>> Aepyprymnus_rufescens
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 757.3 18.3 4.1e-231 4.1e-231 1 340 [. 1 340 [. 1 347 [. 0.99
2 ! 11808.5 45.4 0 0 580 6705 .] 580 6642 .] 573 6642 .] 0.99
Alignments for each domain:
== domain 1 score: 757.3 bits; conditional E-value: 4.1e-231
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwli...
c+f+sv+rmdymvyfsfftwil+plv+mcaiy+difyvirn+ +q fs+sketgafygrefktaksl+l+lflfa+swlplsiinc++yfp+++l+lgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfr+twcevylaldvlfctssivhlcaisldryw+vsraleynskrtprrik+iiltvwli...
Aepyprymnus_rufescens 1 CRFSSVIRMDYMVYFSFFTWILVPLVIMCAIYMDIFYVIRNNXRQXFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINCVSYFPKELLCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLI...
9*****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 11808.5 bits; conditional E-value: 0
Meredith169AA 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLn...
pltipemtlpytttp+++dfslwe+tgLK+fLkTtKQsfDLsv+aqYkKN d+h +p+pL+++y++++ +in++++hfek+rdk+ldfltksYn+ak+kfdkykve+Sl+klprt++ipgY+iP+ni vspft+em+a+gy++Pke++tp+ftipg+gfs+psyt+vlple+pvLhvp++l+kl+Lpdf+++++s++I iPA+GN+TYdFSFKSsviTLn...
Aepyprymnus_rufescens 580 XPLTIPEMTLPYTTTPPLRDFSLWERTGLKDFLKTTKQSFDLSVNAQYKKNTDRHFVPFPLGAVYDALSPDINAVHHHFEKGRDKMLDFLTKSYNKAKVKFDKYKVETSLDKLPRTIRIPGYYIPFNIIVSPFTAEMPAIGYMVPKEMRTPGFTIPGIGFSLPSYTFVLPLEFPVLHVPTSLQKLTLPDFEIPRPSDHIPIPALGNFTYDFSFKSSVITLN...
79***************************************************************************************************************************************************************************************************************************...
>> Acrobates_pygmaeus
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 762.4 17.1 1.2e-232 1.2e-232 1 340 [. 1 340 [. 1 347 [. 0.99
2 ! 1351.8 18.0 0 0 580 1298 .. 580 1298 .. 573 1304 .. 0.99
3 ! 5245.2 11.3 0 0 1504 4546 .. 1504 4509 .. 1497 4515 .. 0.99
4 ! 4873.3 11.5 0 0 4778 6705 .] 4741 6667 .] 4733 6667 .] 1.00
Alignments for each domain:
== domain 1 score: 762.4 bits; conditional E-value: 1.2e-232
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaav...
c+frsvmr+dymvyfsfftwiliplv+mc+iy+difyvirnkl+qnfs+sketgafygrefktaksl+l+lflfa+swlplsiin i+yfpq++++lgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfr+twcevylaldvlfctssivhlcaisldryw+vsraleynskrtprrik+iiltvwliaa+...
Acrobates_pygmaeus 1 CRFRSVMRLDYMVYFSFFTWILIPLVIMCVIYVDIFYVIRNKLRQNFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINTISYFPQELVCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLIAAF...
test/hmmer_double_short.stdout view on Meta::CPAN
Meredith169AA 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntna...
pltipe+tlpyt tp++kdfslwe+tgL++fLkTtKQsfDLsv+aqYkKN d+hsip+pL+++y++++ n + l+rhfek+rdk+ldfltksY+eak+kf+kykve+Sl+klprt+++pg++iP+ni vspft+em+afgy++Pke+stp ftip +gfs+psytlvlple+pvLhvp++l++l+Lpd+k+l++s++I iPAmGN+TYdFSFKSsviTLntn+...
Acrobates_pygmaeus 580 XPLTIPEITLPYTXTPPLKDFSLWERTGLRNFLKTTKQSFDLSVNAQYKKNTDSHSIPFPLGAIYDALSPNTDDLHRHFEKARDKTLDFLTKSYDEAKVKFEKYKVETSLHKLPRTLTVPGFYIPMNIVVSPFTAEMPAFGYMVPKEMSTPAFTIPAIGFSLPSYTLVLPLEFPVLHVPTSLRELTLPDIKILRPSDHISIPAMGNLTYDFSFKSSVITLNTNV...
79******************************************************************************************************************************************************************************************************************************...
== domain 3 score: 5245.2 bits; conditional E-value: 0
Meredith169AA 1504 tlygggfqtgtsslhvydgkflarvervivvsmnyrvgalgflalpgnpeapgnmglfdqqlalqwvqkniaafggnpksvtlfgesagaasvslhllspkshplftrailqsgssnapwavmslsearnrtltlakflgcsreneteiikclrnkdpqeillnevfvvpydtllsvnfgptvdgdfltdmpdtllqlgqfkktqilvgvnkdegtaflvygap...
ygg+f++gtsslhvydgkf+arvervivvsmnyrvgalgflalpgn+eapgnmglfdqqlalqwvq+niaafggn+ks+tlfgesagaasvs+h+lspksh lftrailqsgs+napwavms+searnrtl+lak+l+csrenet +ikclrnk+pqeil + ++++++ll++nf+p+vdgdfltdmpd+l+q+g+fk+tqil+gvnkdegt+flvygap...
Acrobates_pygmaeus 1504 XXYGGSFESGTSSLHVYDGKFMARVERVIVVSMNYRVGALGFLALPGNSEAPGNMGLFDQQLALQWVQENIAAFGGNSKSITLFGESAGAASVSFHILSPKSHLLFTRAILQSGSANAPWAVMSPSEARNRTLDLAKSLSCSRENETDLIKCLRNKNPQEILSHVSPILSSGSLLKINFCPIVDGDFLTDMPDNLIQQGHFKQTQILMGVNKDEGTYFLVYGAP...
67******************************************************************************************************************************************************************************************************************************...
== domain 4 score: 4873.3 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrk+YaAvvTnchK+sWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhs+KWSeCARVK+LEAVITNL+QGEEYLFRVvAVNEKGRSDPRSLAVP++AKDLVIEPDVRPaFns...
Acrobates_pygmaeus 4741 XXNSSGTKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKAYAAVVTNCHKHSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSDKWSECARVKNLEAVITNLAQGEEYLFRVVAVNEKGRSDPRSLAVPVIAKDLVIEPDVRPAFNS...
57******************************************************************************************************************************************************************************************************************************...
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (6705 nodes)
Target sequences: 4 (26502 residues searched)
Passed MSV filter: 4 (1); expected 0.1 (0.02)
Passed bias filter: 4 (1); expected 0.1 (0.02)
Passed Vit filter: 4 (1); expected 0.0 (0.001)
Passed Fwd filter: 4 (1); expected 0.0 (1e-05)
Initial search space (Z): 4 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 4.92u 0.35s 00:00:05.27 Elapsed: 00:00:05.27
# Mc/sec: 33.72
//
Query: Meredith169AA [M=6705]
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 14785.9 16.7 0 13218.3 0.0 2.0 2 Ailuropoda_melanoleuca
0 12909.9 47.3 0 4943.5 15.5 3.0 3 Abrocoma_bennettii
0 12562.0 71.7 0 11808.5 45.4 2.8 2 Aepyprymnus_rufescens
0 12214.1 81.9 0 5245.2 11.3 4.0 4 Acrobates_pygmaeus
Domain annotation for each sequence (and alignments):
>> Ailuropoda_melanoleuca
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1554.0 29.0 0 0 1 640 [. 1 640 [. 1 643 [. 1.00
2 ! 13218.3 0.0 0 0 767 6705 .] 643 6574 .] 640 6574 .] 1.00
Alignments for each domain:
== domain 1 score: 1554.0 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
cqfrsvmrmdymvyfsfftwilipl+vmcaiyldifyvirnkl+qnfs+sk+tgafygrefktakslflvlflfalswlplsiinci+yfpq++lylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
Ailuropoda_melanoleuca 1 CQFRSVMRMDYMVYFSFFTWILIPLIVMCAIYLDIFYVIRNKLNQNFSGSKDTGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCITYFPQILLYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWL...
9****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 13218.3 bits; conditional E-value: 0
Meredith169AA 767 pdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntnaglYnqsDivahflssSssvidaLqykleGtssltrkRglKlAtalslsnkfvegnhdstiSltkknmeasvtttakvqipilrmnfkqelnGntkskptvsssielkYdfnspklystakGavdhklslesltsyfsiesstkgdikgsvlseysgtiaseastYlnskgtrssvklqgaskv...
df+vlst+n+I+iPAmGNiTYdFSFKS +iTLntn+glYnqsDivahfl+sSssv+daLqykleGtssltrkR lKlAtalslsnkfvegnhdstiSltkknmeasvtt+akvqipilrmnfkqelnGntkskptvs siel+Yd+ns++ ysta+G+v hk++lesltsyfsiesstkgdikgsv+s+ysgtiaseastYlnsk+trssvklqgaskv...
Ailuropoda_melanoleuca 643 KDFQVLSTPNDIFIPAMGNITYDFSFKSGIITLNTNVGLYNQSDIVAHFLTSSSSVTDALQYKLEGTSSLTRKRDLKLATALSLSNKFVEGNHDSTISLTKKNMEASVTTSAKVQIPILRMNFKQELNGNTKSKPTVSASIELTYDLNSAEQYSTATGTVSHKFNLESLTSYFSIESSTKGDIKGSVFSKYSGTIASEASTYLNSKSTRSSVKLQGASKV...
69**************************************************************************************************************************************************************************************************************************...
>> Abrocoma_bennettii
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3876.6 2.8 0 0 1 1789 [. 1 1788 [. 1 1795 [. 1.00
2 ! 4102.0 13.3 0 0 2038 4546 .. 2037 4459 .. 2026 4465 .. 0.99
3 ! 4943.5 15.5 0 0 4778 6705 .] 4691 6619 .] 4683 6619 .] 1.00
Alignments for each domain:
== domain 1 score: 3876.6 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaa...
c+f +m+m+ymv+fsfftwi+iplvvmcaiyl+if+virnklsqn+s+sketgafygref+takslflvlflfal+wlplsiinc++yfp+ +++lgillsh i gnal ilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlc isldrywavsraleynskrtprrikciiltvwliaa...
Abrocoma_bennettii 1 CSFLPTMSMEYMVFFSFFTWIFIPLVVMCAIYLNIFHVIRNKLSQNLSASKETGAFYGREFRTAKSLFLVLFLFALCWLPLSIINCALYFPDDIMFLGILLSHXXXXXXILGNALGILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCXISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAA...
99******************************************************************************************************************************************************************************************************************************...
== domain 2 score: 4102.0 bits; conditional E-value: 0
Meredith169AA 2038 qkvnewfsrsdeiltsddshdggsekidllasdphdaliceservhskpvesniedkifgktyrrkaslpnlshiteitqerpltnklkrkrrttsglhpedfikkvdlavvqktpekinegtdqngqvmnitnnghenetkgdyvqkeknanpteslekesafrtkaepisssisnmelelnihsskapkknrlrrksstrhihalelvvsrnpsppnhtelq...
vnewfsrsde+ ts+d +d + ek+dl asdp++a++c++ r ++ + + ++edk+fgktyrrk sl nlsh + +tqe+plt+++krkrrt s+lhpedfikk+ la +qktpek ++g++q++qv++i nn+ enet+g vq+ +n++p++slekes+ + +ep+sss ++mele+n++ ap+ nrlr++ss+r+++ + spp h elq...
Abrocoma_bennettii 2037 XXVNEWFSRSDEMETSEDGCDWEXEKTDLKASDPQRAVTCATVRGCPSAGKGSVEDKVFGKTYRRKGSLANLSHSAXVTQECPLTSTVKRKRRTLSCLHPEDFIKKAGLAAAQKTPEKDTQGMKQSSQVTSIPNNN-ENETEGVAVQRXQNPSPVQSLEKESVPGMGTEPQSSSGNSMELEWNVCPPGAPQGNRLRKRSSARQVP--------HLSPPGHPELQ...
679**********************************************************************************************************************************985.9*******************************************************************........779********...
== domain 3 score: 4943.5 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssg+ksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPi+AKDLVIEPDVRPaF+s...
Abrocoma_bennettii 4691 XXNSSGMKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSEKWSECARVKSLEAVITNLTQGEEYLFRVVAVNEKGRSDPRSLAVPIIAKDLVIEPDVRPAFSS...
57******************************************************************************************************************************************************************************************************************************...
>> Aepyprymnus_rufescens
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 757.3 18.3 4.1e-231 4.1e-231 1 340 [. 1 340 [. 1 347 [. 0.99
2 ! 11808.5 45.4 0 0 580 6705 .] 580 6642 .] 573 6642 .] 0.99
Alignments for each domain:
== domain 1 score: 757.3 bits; conditional E-value: 4.1e-231
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwli...
c+f+sv+rmdymvyfsfftwil+plv+mcaiy+difyvirn+ +q fs+sketgafygrefktaksl+l+lflfa+swlplsiinc++yfp+++l+lgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfr+twcevylaldvlfctssivhlcaisldryw+vsraleynskrtprrik+iiltvwli...
Aepyprymnus_rufescens 1 CRFSSVIRMDYMVYFSFFTWILVPLVIMCAIYMDIFYVIRNNXRQXFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINCVSYFPKELLCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLI...
9*****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 11808.5 bits; conditional E-value: 0
Meredith169AA 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLn...
pltipemtlpytttp+++dfslwe+tgLK+fLkTtKQsfDLsv+aqYkKN d+h +p+pL+++y++++ +in++++hfek+rdk+ldfltksYn+ak+kfdkykve+Sl+klprt++ipgY+iP+ni vspft+em+a+gy++Pke++tp+ftipg+gfs+psyt+vlple+pvLhvp++l+kl+Lpdf+++++s++I iPA+GN+TYdFSFKSsviTLn...
Aepyprymnus_rufescens 580 XPLTIPEMTLPYTTTPPLRDFSLWERTGLKDFLKTTKQSFDLSVNAQYKKNTDRHFVPFPLGAVYDALSPDINAVHHHFEKGRDKMLDFLTKSYNKAKVKFDKYKVETSLDKLPRTIRIPGYYIPFNIIVSPFTAEMPAIGYMVPKEMRTPGFTIPGIGFSLPSYTFVLPLEFPVLHVPTSLQKLTLPDFEIPRPSDHIPIPALGNFTYDFSFKSSVITLN...
79***************************************************************************************************************************************************************************************************************************...
>> Acrobates_pygmaeus
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 762.4 17.1 1.2e-232 1.2e-232 1 340 [. 1 340 [. 1 347 [. 0.99
2 ! 1351.8 18.0 0 0 580 1298 .. 580 1298 .. 573 1304 .. 0.99
3 ! 5245.2 11.3 0 0 1504 4546 .. 1504 4509 .. 1497 4515 .. 0.99
4 ! 4873.3 11.5 0 0 4778 6705 .] 4741 6667 .] 4733 6667 .] 1.00
Alignments for each domain:
== domain 1 score: 762.4 bits; conditional E-value: 1.2e-232
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaav...
c+frsvmr+dymvyfsfftwiliplv+mc+iy+difyvirnkl+qnfs+sketgafygrefktaksl+l+lflfa+swlplsiin i+yfpq++++lgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfr+twcevylaldvlfctssivhlcaisldryw+vsraleynskrtprrik+iiltvwliaa+...
Acrobates_pygmaeus 1 CRFRSVMRLDYMVYFSFFTWILIPLVIMCVIYVDIFYVIRNKLRQNFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINTISYFPQELVCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLIAAF...
( run in 0.584 second using v1.01-cache-2.11-cpan-39bf76dae61 )