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test/blastn2.xml view on Meta::CPAN
<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
<BlastOutput_program>blastn</BlastOutput_program>
<BlastOutput_version>BLASTN 2.2.26+</BlastOutput_version>
<BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference>
<BlastOutput_db>chlamy_mito</BlastOutput_db>
<BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
<BlastOutput_query-def>gi|11465907|ref|NC_001872.1| Chlamydomonas eugametos mitochondrion, complete genome</BlastOutput_query-def>
<BlastOutput_query-len>22897</BlastOutput_query-len>
<BlastOutput_param>
<Parameters>
<Parameters_expect>10</Parameters_expect>
<Parameters_sc-match>1</Parameters_sc-match>
<Parameters_sc-mismatch>-2</Parameters_sc-mismatch>
<Parameters_gap-open>0</Parameters_gap-open>
<Parameters_gap-extend>0</Parameters_gap-extend>
<Parameters_filter>L;m;</Parameters_filter>
</Parameters>
</BlastOutput_param>
<BlastOutput_iterations>
<Iteration>
<Iteration_iter-num>1</Iteration_iter-num>
<Iteration_query-ID>Query_1</Iteration_query-ID>
<Iteration_query-def>gi|11465907|ref|NC_001872.1| Chlamydomonas eugametos mitochondrion, complete genome</Iteration_query-def>
<Iteration_query-len>22897</Iteration_query-len>
<Iteration_hits>
<Hit>
<Hit_num>1</Hit_num>
<Hit_id>gnl|BL_ORD_ID|0</Hit_id>
<Hit_def>gi|11465907|ref|NC_001872.1| Chlamydomonas eugametos mitochondrion, complete genome</Hit_def>
<Hit_accession>0</Hit_accession>
<Hit_len>22897</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>42283.9</Hsp_bit-score>
<Hsp_score>22897</Hsp_score>
<Hsp_evalue>0</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>22897</Hsp_query-to>
<Hsp_hit-from>1</Hsp_hit-from>
<Hsp_hit-to>22897</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>22897</Hsp_identity>
<Hsp_positive>22897</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>22897</Hsp_align-len>
<Hsp_qseq>AGATTTAAAGAACTAAAATTTTACGTATTGTATAAAGATCTCATAAAGATTAGCTTAGAAGCAGTTATTCTATAATGAAAGCGTAGTAGCTCATATGTTTAGTACAGTAAGTAAACAAATGTCCGGGAATAAGAAAGAACTGAAACTCACTAAAAGAAAGTAAAAAATAGAAGATTAAGTAAATAAAGATGTTTATTGGACCCGAAACTGCTACGAGCTTGTTATT...
<Hsp_hseq>AGATTTAAAGAACTAAAATTTTACGTATTGTATAAAGATCTCATAAAGATTAGCTTAGAAGCAGTTATTCTATAATGAAAGCGTAGTAGCTCATATGTTTAGTACAGTAAGTAAACAAATGTCCGGGAATAAGAAAGAACTGAAACTCACTAAAAGAAAGTAAAAAATAGAAGATTAAGTAAATAAAGATGTTTATTGGACCCGAAACTGCTACGAGCTTGTTATT...
<Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||...
</Hsp>
<Hsp>
<Hsp_num>2</Hsp_num>
<Hsp_bit-score>529.262</Hsp_bit-score>
<Hsp_score>286</Hsp_score>
<Hsp_evalue>4.19129e-151</Hsp_evalue>
<Hsp_query-from>18144</Hsp_query-from>
<Hsp_query-to>18491</Hsp_query-to>
<Hsp_hit-from>11535</Hsp_hit-from>
<Hsp_hit-to>11884</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>331</Hsp_identity>
<Hsp_positive>331</Hsp_positive>
<Hsp_gaps>6</Hsp_gaps>
<Hsp_align-len>352</Hsp_align-len>
<Hsp_qseq>ATAGCTATACATTTTTA-TAACTAAAAAAATTCTGATTAAGTTTTTCGTATAAAGGGAGAAATTTCGATACGTG--GGAGGGGGGTATATGGGTAGGGTTCTATCAGGTCCTGTTAAGGGCCTGTATAGGACCCGGGGGTTCTATTAGGTCTTATATATAGGTTAGTTATATATAGGTCCTGTTAAGGGCCTATATATTGACATGGGAGACTATATCAGGTAGTGA...
<Hsp_hseq>ATAACTATACAATTCTAGT-ACTAAATAATTTTTGTTTAAGTTTTTCGTATAAAGGGAAAAATTTTGATACGTGTTGG-GGGGGGGGGGGGGGTAGGGTTCTATCAGGTCCTGTTAAGGGCCTGTATAGGACCCGGGGGTTCTATTAGGTCTTATATATAGGTTAGTTATATATAGGTCCTGTTAAGGGCCTATATATTGACATGGGAGACTATATCAGGTAGTGA...
<Hsp_midline>||| ||||||| || || | |||||| || || || |||||||||||||||||||||| |||||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||...
</Hsp>
<Hsp>
<Hsp_num>3</Hsp_num>
<Hsp_bit-score>529.262</Hsp_bit-score>
<Hsp_score>286</Hsp_score>
<Hsp_evalue>4.19129e-151</Hsp_evalue>
<Hsp_query-from>11535</Hsp_query-from>
<Hsp_query-to>11884</Hsp_query-to>
<Hsp_hit-from>18144</Hsp_hit-from>
<Hsp_hit-to>18491</Hsp_hit-to>
test/blastn2.xml view on Meta::CPAN
<Hsp_bit-score>159.932</Hsp_bit-score>
<Hsp_score>86</Hsp_score>
<Hsp_evalue>4.3584e-40</Hsp_evalue>
<Hsp_query-from>14999</Hsp_query-from>
<Hsp_query-to>15084</Hsp_query-to>
<Hsp_hit-from>15758</Hsp_hit-from>
<Hsp_hit-to>15673</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>-1</Hsp_hit-frame>
<Hsp_identity>86</Hsp_identity>
<Hsp_positive>86</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>86</Hsp_align-len>
<Hsp_qseq>ACTACGCATGCCTAAGTGCGCAAACAGTATCGGTTTGGTTGATCTGCATCCTACCAGCCGTCTTCTACGACTCGCACGATCCTATA</Hsp_qseq>
<Hsp_hseq>ACTACGCATGCCTAAGTGCGCAAACAGTATCGGTTTGGTTGATCTGCATCCTACCAGCCGTCTTCTACGACTCGCACGATCCTATA</Hsp_hseq>
<Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>2</Hit_num>
<Hit_id>gnl|BL_ORD_ID|0</Hit_id>
<Hit_def>gi|11465907|ref|NC_001872.1| Chlamydomonas eugametos mitochondrion, complete genome</Hit_def>
<Hit_accession>0</Hit_accession>
<Hit_len>22897</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>98.9927</Hsp_bit-score>
<Hsp_score>53</Hsp_score>
<Hsp_evalue>9.63664e-22</Hsp_evalue>
<Hsp_query-from>12953</Hsp_query-from>
<Hsp_query-to>13068</Hsp_query-to>
<Hsp_hit-from>2831</Hsp_hit-from>
<Hsp_hit-to>2946</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>99</Hsp_identity>
<Hsp_positive>99</Hsp_positive>
<Hsp_gaps>8</Hsp_gaps>
<Hsp_align-len>120</Hsp_align-len>
<Hsp_qseq>CGATGTTGGATCATCGCGTCCTGTGGCTGAAGGAGGTCGCAAGGGTT-GGATTGTTCGTCC-ATTAAAGCGGTACGTGATCTGAGTTCAGACCG-TCGTGA-GACAGGTCGGTTTCTATC</Hsp_qseq>
<Hsp_hseq>CGATGTTGGATCATCGCGTCCTAAAGCTGCACAAGGTTTTAAGGGTTAGG-TTGTTC-ACCTATTAAAGCGGTACGTGATCTGAGTTCAGAACGCT-GCGAAG-CAGTTCGGTTTCTATC</Hsp_hseq>
<Hsp_midline>|||||||||||||||||||||| |||| | |||| ||||||| || |||||| || ||||||||||||||||||||||||||||| || | | || | ||| ||||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
</Iteration_hits>
<Iteration_stat>
<Statistics>
<Statistics_db-num>2</Statistics_db-num>
<Statistics_db-len>38655</Statistics_db-len>
<Statistics_hsp-len>20</Statistics_hsp-len>
<Statistics_eff-space>607722870</Statistics_eff-space>
<Statistics_kappa>0.46</Statistics_kappa>
<Statistics_lambda>1.28</Statistics_lambda>
<Statistics_entropy>0.85</Statistics_entropy>
</Statistics>
</Iteration_stat>
</Iteration>
</BlastOutput_iterations>
</BlastOutput>
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