AI-Gene-Sequence

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  ok($gene->d eq 'abcdefghij');
  # hammer randomness
  $rt = 0;
  for (1..$hammer) {
    $gene = $main->clone;
    eval '$gene->mutate_insert';
    $rt = 1 if $@;
  }
  ok($rt,0);
}

{ print "# mutate_overwrite\n";
  my $gene = $main->clone;
  my $rt = $gene->mutate_overwrite(1,0,1); # first to second
  ok($rt,1);
  ok($gene->d, 'aacdefghij');
  $gene = $main->clone;
  $rt = $gene->mutate_overwrite(1,0,4,3); # has length
  ok($rt,1);
  ok($gene->d, 'abcdabchij');
  $gene = $main->clone;
  $rt = $gene->mutate_overwrite(1,3,4,3); # overlap
  ok($rt,1);
  ok($gene->d, 'abcddefhij');
  $gene = $main->clone;
  $rt = $gene->mutate_overwrite(1,0,10,3); # dump lies at end of gene
  ok($rt,1);
  ok($gene->d, 'abcdefghijabc');
  $gene = $main->clone;
  $rt = $gene->mutate_overwrite(1,0,11); # dump lies beyond end of gene
  ok($rt,0);
  ok($gene->d, 'abcdefghij');
  $gene = $main->clone;
  $rt = $gene->mutate_overwrite(1,11,4); # area to copy lies outside gene
  ok($rt,0);
  ok($gene->d, 'abcdefghij');
  # hammer randomness
  $rt = 0;
  for (1..$hammer) {
    $gene = $main->clone;
    eval '$gene->mutate_overwrite(1,undef,undef,0)';
    $rt = 1 if $@;
  }
  ok($rt,0);
}

{ print "# mutate_reverse\n";
  my $gene = $main->clone;
  my $rt = $gene->mutate_reverse(1,0,2);
  ok($rt,1);
  ok($gene->d, 'bacdefghij');
  $gene = $main->clone;
  $rt = $gene->mutate_reverse(1,0,10); # whole gene
  ok($rt,1);
  ok($gene->d, 'jihgfedcba');
  $gene = $main->clone;
  $rt = $gene->mutate_reverse(1,8,4); # extends beyond gene
  ok($rt,0);
  ok($gene->d, 'abcdefghij');
  $gene = $main->clone;
  $rt = $gene->mutate_reverse(1,10,1); # starts outside gene
  ok($rt,0);
  ok($gene->d, 'abcdefghij');
  # hammer randomness
  $rt = 0;
  for (1..$hammer) {
    $gene = $main->clone;
    eval '$gene->mutate_reverse(1,undef,0)';
    $rt = 1 if $@;
  }
  ok($rt,0);
}

{ print "# mutate_duplicate\n";
  my $gene = $main->clone;
  my $rt = $gene->mutate_duplicate(1,0,0);
  ok($rt,1);
  ok($gene->d, 'aabcdefghij');
  $gene = $main->clone;
  $rt = $gene->mutate_duplicate(1,9,0); # from end of gene to front
  ok($rt,1);
  ok($gene->d, 'jabcdefghij');
  $gene = $main->clone;
  $rt = $gene->mutate_duplicate(1,10,0); # from outside of gene
  ok($rt,0);
  ok($gene->d, 'abcdefghij');
  $gene = $main->clone;
  $rt = $gene->mutate_duplicate(1,0,11); # to posn beyond end of gene
  ok($rt,0);
  ok($gene->d, 'abcdefghij');
  $gene = $main->clone;
  $rt = $gene->mutate_duplicate(1,0,10); # to posn at very end of gene
  ok($rt,1);
  ok($gene->d, 'abcdefghija');
  $gene = $main->clone;
  $rt = $gene->mutate_duplicate(1,0,10,10); # double the gene
  ok($rt,1);
  ok($gene->d, 'abcdefghijabcdefghij');
  # hammer randomness
  $rt = 0;
  for (1..$hammer) {
    $gene = $main->clone;
    eval '$gene->mutate_duplicate(1,undef,undef,0)';
  }
  ok($rt,0);
}

{ print "# mutate_switch\n";
  my $gene = $main->clone;
  my $rt = $gene->mutate_switch(1,0,9); # first and last
  ok($rt,1);
  ok($gene->d, 'jbcdefghia');
  $gene = $main->clone;
  $rt = $gene->mutate_switch(1,0,8,2,2); # 1st 2 and last 2
  ok($rt,1);
  ok($gene->d, 'ijcdefghab');
  $gene = $main->clone;
  $rt = $gene->mutate_switch(1,0,5,2,4); # different lengths
  ok($rt,1);
  ok($gene->d, 'fghicdeabj');
  $gene = $main->clone;



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