AI-Gene-Sequence
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ok($rt,0);
}
{ print "# mutate_remove\n";
my $gene = $main->clone;
my $rt = $gene->mutate_remove(1,0);
ok($rt,1);
ok($gene->d eq 'bcdefghij');
$rt = $gene->mutate_remove(1,0,2);
ok($rt,1);
ok($gene->d eq 'defghij');
$rt = $gene->mutate_remove(1,7); # outside of gene
ok($rt,0);
ok($gene->d eq 'defghij');
$rt = $gene->mutate_remove(1,5,5); # extends beyond gene
ok($rt,1);
ok($gene->d eq 'defgh');
# hammer randomness
$rt = 0;
for (1..$hammer) {
$gene = $main->clone;
eval '$gene->mutate_remove(1,undef,0)';
$rt = 1 if $@;
}
ok($rt,0);
}
{ print "# mutate_insert\n";
my $gene = $main->clone;
my $rt = $gene->mutate_insert(1,0);
ok($rt,1);
ok($gene->d eq 'Nabcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_insert(1,10); # last possible pos
ok($rt,1);
ok($gene->d eq 'abcdefghijN');
$gene = $main->clone;
$rt = $gene->mutate_insert;
ok($rt,1);
ok($gene->d ne 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_insert(1,11); # outside of gene
ok($rt,0);
ok($gene->d eq 'abcdefghij');
# hammer randomness
$rt = 0;
for (1..$hammer) {
$gene = $main->clone;
eval '$gene->mutate_insert';
$rt = 1 if $@;
}
ok($rt,0);
}
{ print "# mutate_overwrite\n";
my $gene = $main->clone;
my $rt = $gene->mutate_overwrite(1,0,1); # first to second
ok($rt,1);
ok($gene->d, 'aacdefghij');
$gene = $main->clone;
$rt = $gene->mutate_overwrite(1,0,4,3); # has length
ok($rt,1);
ok($gene->d, 'abcdabchij');
$gene = $main->clone;
$rt = $gene->mutate_overwrite(1,3,4,3); # overlap
ok($rt,1);
ok($gene->d, 'abcddefhij');
$gene = $main->clone;
$rt = $gene->mutate_overwrite(1,0,10,3); # dump lies at end of gene
ok($rt,1);
ok($gene->d, 'abcdefghijabc');
$gene = $main->clone;
$rt = $gene->mutate_overwrite(1,0,11); # dump lies beyond end of gene
ok($rt,0);
ok($gene->d, 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_overwrite(1,11,4); # area to copy lies outside gene
ok($rt,0);
ok($gene->d, 'abcdefghij');
# hammer randomness
$rt = 0;
for (1..$hammer) {
$gene = $main->clone;
eval '$gene->mutate_overwrite(1,undef,undef,0)';
$rt = 1 if $@;
}
ok($rt,0);
}
{ print "# mutate_reverse\n";
my $gene = $main->clone;
my $rt = $gene->mutate_reverse(1,0,2);
ok($rt,1);
ok($gene->d, 'bacdefghij');
$gene = $main->clone;
$rt = $gene->mutate_reverse(1,0,10); # whole gene
ok($rt,1);
ok($gene->d, 'jihgfedcba');
$gene = $main->clone;
$rt = $gene->mutate_reverse(1,8,4); # extends beyond gene
ok($rt,0);
ok($gene->d, 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_reverse(1,10,1); # starts outside gene
ok($rt,0);
ok($gene->d, 'abcdefghij');
# hammer randomness
$rt = 0;
for (1..$hammer) {
$gene = $main->clone;
eval '$gene->mutate_reverse(1,undef,0)';
$rt = 1 if $@;
}
ok($rt,0);
}
{ print "# mutate_duplicate\n";
my $gene = $main->clone;
my $rt = $gene->mutate_duplicate(1,0,0);
ok($rt,1);
ok($gene->d, 'aabcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_duplicate(1,9,0); # from end of gene to front
ok($rt,1);
ok($gene->d, 'jabcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_duplicate(1,10,0); # from outside of gene
ok($rt,0);
ok($gene->d, 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_duplicate(1,0,11); # to posn beyond end of gene
ok($rt,0);
ok($gene->d, 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_duplicate(1,0,10); # to posn at very end of gene
ok($rt,1);
ok($gene->d, 'abcdefghija');
$gene = $main->clone;
$rt = $gene->mutate_duplicate(1,0,10,10); # double the gene
ok($rt,1);
ok($gene->d, 'abcdefghijabcdefghij');
# hammer randomness
$rt = 0;
for (1..$hammer) {
$gene = $main->clone;
eval '$gene->mutate_duplicate(1,undef,undef,0)';
}
ok($rt,0);
}
{ print "# mutate_switch\n";
my $gene = $main->clone;
my $rt = $gene->mutate_switch(1,0,9); # first and last
ok($rt,1);
ok($gene->d, 'jbcdefghia');
$gene = $main->clone;
$rt = $gene->mutate_switch(1,0,8,2,2); # 1st 2 and last 2
ok($rt,1);
ok($gene->d, 'ijcdefghab');
$gene = $main->clone;
$rt = $gene->mutate_switch(1,0,5,2,4); # different lengths
ok($rt,1);
ok($gene->d, 'fghicdeabj');
$gene = $main->clone;
$rt = $gene->mutate_switch(1,0,10); # pos2 outside gene
ok($rt,0);
ok($gene->d, 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_switch(1,10,0); # pos1 outside gene (silently same as)
ok($rt,0);
ok($gene->d, 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_switch(1,0,9,1,2); # second section extends beyond
ok($rt,0);
ok($gene->d, 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_switch(1,0,2,5,3); # overlap of sections
ok($rt,0);
ok($gene->d, 'abcdefghij');
# hammer randomness
$rt = 0;
for (1..$hammer) {
$gene = $main->clone;
eval '$gene->mutate_switch(1,undef,undef,0,0)';
$rt = 1 if $@;
}
ok($rt,0);
}
{ print "# mutate_shuffle\n";
my $gene = $main->clone;
my $rt = $gene->mutate_shuffle(1,5,0); # from after to
ok($rt,1);
ok($gene->d, 'fabcdeghij');
$gene = $main->clone;
$rt = $gene->mutate_shuffle(1,5,0,2); # extended sequence
ok($rt,1);
ok($gene->d, 'fgabcdehij');
$gene = $main->clone;
$rt = $gene->mutate_shuffle(1,0,5,2); # to after from
ok($rt,1);
ok($gene->d, 'cdeabfghij');
$gene = $main->clone;
$rt = $gene->mutate_shuffle(1,0,9,1); # 1st to last
ok($rt,1);
ok($gene->d, 'bcdefghiaj');
$gene = $main->clone;
$rt = $gene->mutate_shuffle(1,0,3,8); # overlap
ok($rt,0);
ok($gene->d, 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_shuffle(1,0,10,1); # to posn outside gene
ok($rt,0);
ok($gene->d, 'abcdefghij');
$gene = $main->clone;
$rt = $gene->mutate_shuffle(1,0,8,5); # should suceed
ok($rt,1);
ok($gene->d, 'fghabcdeij');
$gene = $main->clone;
$rt = $gene->mutate_shuffle(1,8,5,5); # extends beyond gene
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