Convert-Pheno

 view release on metacpan or  search on metacpan

t/omop2bff/out/individuals.json  view on Meta::CPAN

   "id" : "662",
   "info" : {
      "PERSON" : {
         "OMOP_columns" : {
            "birth_datetime" : "1960-09-21 00:00:00",
            "care_site_id" : "\\N",
            "day_of_birth" : 21,
            "ethnicity_concept_id" : 0,
            "ethnicity_source_concept_id" : 0,
            "ethnicity_source_value" : "english",
            "gender_concept_id" : 8507,
            "gender_source_concept_id" : 0,
            "gender_source_value" : "M",
            "location_id" : "\\N",
            "month_of_birth" : 9,
            "person_id" : 662,
            "person_source_value" : "1e695c5b-6b31-4373-910a-6dc5af4d02b1",
            "provider_id" : "\\N",
            "race_concept_id" : 8527,
            "race_source_concept_id" : 0,
            "race_source_value" : "white",
            "year_of_birth" : 1960
         }
      },
      "dateOfBirth" : "1960-09-21T00:00:00Z"
   },
   "interventionsOrProcedures" : [
      {
         "_info" : {
            "PROCEDURE_OCCURRENCE" : {
               "OMOP_columns" : {
                  "modifier_concept_id" : 0,
                  "modifier_source_value" : null,
                  "person_id" : 662,
                  "procedure_concept_id" : 4216130,
                  "procedure_date" : "2012-06-06",
                  "procedure_datetime" : "2012-06-06 00:00:00",
                  "procedure_occurrence_id" : 7120,
                  "procedure_source_concept_id" : 4216130,
                  "procedure_source_value" : 415070008,
                  "procedure_type_concept_id" : 38000275,
                  "provider_id" : "\\N",
                  "quantity" : "\\N",
                  "visit_detail_id" : 0,
                  "visit_occurrence_id" : 43754
               }
            }
         },
         "ageAtProcedure" : {
            "age" : {
               "iso8601duration" : "P51Y"
            }
         },
         "bodySite" : {
            "id" : "NCIT:C126101",
            "label" : "Not Available"
         },
         "dateOfProcedure" : "2012-06-06",
         "procedureCode" : {
            "id" : "SNOMED:415070008",
            "label" : "Percutaneous coronary intervention"
         }
      },
      {
         "_info" : {
            "PROCEDURE_OCCURRENCE" : {
               "OMOP_columns" : {
                  "modifier_concept_id" : 0,
                  "modifier_source_value" : null,
                  "person_id" : 662,
                  "procedure_concept_id" : 4336464,
                  "procedure_date" : "2012-06-06",
                  "procedure_datetime" : "2012-06-06 00:00:00",
                  "procedure_occurrence_id" : 7121,
                  "procedure_source_concept_id" : 4336464,
                  "procedure_source_value" : 232717009,
                  "procedure_type_concept_id" : 38000275,
                  "provider_id" : "\\N",
                  "quantity" : "\\N",
                  "visit_detail_id" : 0,
                  "visit_occurrence_id" : 43754
               }
            }
         },
         "ageAtProcedure" : {
            "age" : {
               "iso8601duration" : "P51Y"
            }
         },
         "bodySite" : {
            "id" : "NCIT:C126101",
            "label" : "Not Available"
         },
         "dateOfProcedure" : "2012-06-06",
         "procedureCode" : {
            "id" : "SNOMED:232717009",
            "label" : "Coronary artery bypass graft"
         }
      },
      {
         "_info" : {
            "PROCEDURE_OCCURRENCE" : {
               "OMOP_columns" : {
                  "modifier_concept_id" : 0,
                  "modifier_source_value" : null,
                  "person_id" : 662,
                  "procedure_concept_id" : 4293740,
                  "procedure_date" : "1993-10-01",
                  "procedure_datetime" : "1993-10-01 00:00:00",
                  "procedure_occurrence_id" : 7122,
                  "procedure_source_concept_id" : 4293740,
                  "procedure_source_value" : 384700001,
                  "procedure_type_concept_id" : 38000275,
                  "provider_id" : "\\N",
                  "quantity" : "\\N",
                  "visit_detail_id" : 0,
                  "visit_occurrence_id" : 43752
               }
            }
         },
         "ageAtProcedure" : {

t/omop2bff/out/individuals.json  view on Meta::CPAN

                  "procedure_datetime" : "2005-08-28 00:00:00",
                  "procedure_occurrence_id" : 7723,
                  "procedure_source_concept_id" : 4336464,
                  "procedure_source_value" : 232717009,
                  "procedure_type_concept_id" : 38000275,
                  "provider_id" : "\\N",
                  "quantity" : "\\N",
                  "visit_detail_id" : 0,
                  "visit_occurrence_id" : 46975
               }
            }
         },
         "ageAtProcedure" : {
            "age" : {
               "iso8601duration" : "P56Y"
            }
         },
         "bodySite" : {
            "id" : "NCIT:C126101",
            "label" : "Not Available"
         },
         "dateOfProcedure" : "2005-08-28",
         "procedureCode" : {
            "id" : "SNOMED:232717009",
            "label" : "Coronary artery bypass graft"
         }
      },
      {
         "_info" : {
            "PROCEDURE_OCCURRENCE" : {
               "OMOP_columns" : {
                  "modifier_concept_id" : 0,
                  "modifier_source_value" : null,
                  "person_id" : 709,
                  "procedure_concept_id" : 4216130,
                  "procedure_date" : "2005-08-28",
                  "procedure_datetime" : "2005-08-28 00:00:00",
                  "procedure_occurrence_id" : 7724,
                  "procedure_source_concept_id" : 4216130,
                  "procedure_source_value" : 415070008,
                  "procedure_type_concept_id" : 38000275,
                  "provider_id" : "\\N",
                  "quantity" : "\\N",
                  "visit_detail_id" : 0,
                  "visit_occurrence_id" : 46975
               }
            }
         },
         "ageAtProcedure" : {
            "age" : {
               "iso8601duration" : "P56Y"
            }
         },
         "bodySite" : {
            "id" : "NCIT:C126101",
            "label" : "Not Available"
         },
         "dateOfProcedure" : "2005-08-28",
         "procedureCode" : {
            "id" : "SNOMED:415070008",
            "label" : "Percutaneous coronary intervention"
         }
      },
      {
         "_info" : {
            "PROCEDURE_OCCURRENCE" : {
               "OMOP_columns" : {
                  "modifier_concept_id" : 0,
                  "modifier_source_value" : null,
                  "person_id" : 709,
                  "procedure_concept_id" : 4151422,
                  "procedure_date" : "1973-11-24",
                  "procedure_datetime" : "1973-11-24 00:00:00",
                  "procedure_occurrence_id" : 7725,
                  "procedure_source_concept_id" : 4151422,
                  "procedure_source_value" : 269911007,
                  "procedure_type_concept_id" : 38000275,
                  "provider_id" : "\\N",
                  "quantity" : "\\N",
                  "visit_detail_id" : 0,
                  "visit_occurrence_id" : 46964
               }
            }
         },
         "ageAtProcedure" : {
            "age" : {
               "iso8601duration" : "P24Y"
            }
         },
         "bodySite" : {
            "id" : "NCIT:C126101",
            "label" : "Not Available"
         },
         "dateOfProcedure" : "1973-11-24",
         "procedureCode" : {
            "id" : "SNOMED:269911007",
            "label" : "Sputum examination"
         }
      }
   ],
   "sex" : {
      "id" : "NCIT:C20197",
      "label" : "Male"
   }
},
{
   "ethnicity" : {
      "id" : "NCIT:C41261",
      "label" : "White"
   },
   "geographicOrigin" : {
      "id" : "NCIT:NA0000",
      "label" : "NA"
   },
   "id" : "710",
   "info" : {
      "PERSON" : {
         "OMOP_columns" : {
            "birth_datetime" : "1961-04-18 00:00:00",
            "care_site_id" : "\\N",
            "day_of_birth" : 18,



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