Bio-Graphics-Glyph-decorated_gene
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}
sub add_tracks{
my $panel = shift;
# ruler
can_ok($panel, qw(add_track));
$panel->add_track(
Bio::Graphics::Feature->new(-start => $gene_minus->start-100, -end => $gene_minus->end),
-glyph => 'arrow',
-bump => 0,
-double => 1,
-tick => 2
);
ok(1, 'ruler made');
$panel->add_track
(
$gene_minus,
-glyph => 'decorated_gene',
-decoration_visible => 1,
-height => 12,
-decoration_color => 'black',
#-decoration_height => #default is 2 less than the track height
);
ok(1, 'track1 added');
$panel->add_track
(
$gene_minus,
-glyph => 'decorated_gene',
-decoration_visible => 1,
-height => 12,
-decoration_color => 'black',
-decoration_height => 5
);
ok(1, 'track2 added');
$panel->add_track
(
$gene_minus,
-glyph => 'decorated_gene',
-decoration_visible => 1,
-height => 12,
-decoration_color => 'black',
-decoration_height => 24
);
ok(1, 'track3 added');
$panel->add_track
(
$utr_gene,
-glyph => 'decorated_gene',
-decoration_visible => 1,
-height => 12,
-decoration_color => 'black',
-decoration_height => 24
);
ok(1, 'track4 added');
#can be used with transparent boxes to show highlights
$panel->add_track
(
$gene_minus,
-glyph => 'decorated_gene',
-decoration_visible => 1,
-height => 12,
-decoration_color => 'transparent', #special colour to make outlines
-decoration_border => 'solid',
-decoration_border_color => 'red',
-decoration_height => 24
);
ok(1, 'track5 added');
$panel->add_track
(
$gene_minus,
-glyph => 'decorated_gene',
-decoration_visible => 1,
-height => 12,
-decoration_color => 'black',
-decoration_height => sub {
my ($feature, $option_name, $part_no, $total_parts, $glyph) = @_;
return '5' if ($glyph->active_decoration->name eq "TM");
return '24' if ($glyph->active_decoration->type eq "SignalP4");
return '10';
},
);
ok(1, 'track6 added');
};
# write image
my $png = $panel->png;
is($png,$panel->png,'png created');
my $imgfile = "t/data/heights.png";
system("rm $imgfile") if (-e $imgfile);
open(IMG,">$imgfile") or die "could not write to file $imgfile";
print IMG $png;
close(IMG);
ok(-e $imgfile, 'imgfile created');
my $filesize = -s $imgfile;
isnt($filesize,0, 'check nonzero filesize');
SKIP: {
eval{ require GD::SVG };
skip "GD::SVG not installed", 2 if $@;
my $svg = $panel2->svg;
#is($svg,$panel2->svg,'svg created');
my $svgfile = "t/data/heights.svg";
system("rm $svgfile") if (-e $svgfile);
open(IMG,">$svgfile") or die "could not write to file $svgfile";
print IMG $svg;
close(IMG);
ok(-e $svgfile, 'svgfile created');
$filesize = -s $svgfile;
isnt($filesize,0, 'check nonzero filesize');
}
( run in 1.887 second using v1.01-cache-2.11-cpan-7fcb06a456a )