BioPerl-Run

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t/data/test-spa-p.fas  view on Meta::CPAN

KLKMVQS*WRQVKF*KVERLDIHLQMILKIRLM*RLN*KLIYLLILKLYKLMEIKL*LQH
*MKNKLQRN*MLNIKMVLGIIMPI*MDRLRHLIKRIIDFRMLHLLNLIMVKRQV*LLLEL
**KVVIRMEINQKLGYLNTWVIMKT*RRVYMQIRQILLNLKKSQVI*VGI*IYKIMEAIH
*I*KI*IKLMLFTMMESI*MVLMKLILEHKW*DIQSNFISIIMIEDIP*LGIMV*FYTVI
KRTEMGKMVRLFKIINLNIKKIQLKKLLQVNMIRI**LLLKRNMIHQLLTLITTQL*MVE
VDMLMDTLKQ*KKRIHQLLISITILLWIAKQVTLEDTLSPLRNQIQLTLKNRHMKIQNIM
LMLLNMKKIQTQVVVRLLLSLT*LNLTKILQKVL*LVLLAIIQQLKIRKNIRLKVI*LN*
*MNYLKNMVKRKDQSRKLLKTIIIFLILV*ELKMVTVIMA*LKKSKKIATWILRVN*VRK
VAKIAVISHLRKTQKKINRNMNKVAIS*ISISIVYLKFMVKIMVTNHSKKIQRKTNLSMN
KVVISLISTSTVCHIFTDSISTLKLLKKIQIKINQIINSVDTIVLTLKKIHFHK*VVIMK
VNKRLKKIQHLQSCHQRHRHQKYQASRKHQHHRHQKYQASRKHQHRQRQRYQLNLVNQYH
LLKKNLKNLLNQWNKVK**HLLLKSMKRLKQWYQLKKHNLRNLNYLKQVEKNQQTTACCS
ADYLAF*V*HYYAEIKRITKHN*TKIDGFIS*II*SKPVFLY*IKFLIEN*SVF*LLHWL
DLR
>gi|51965169|emb|AJ829762.1| Staphylococcus aureus subsp. aureus partial spa gene for protein A
CCATR*SSTKCFLSSVKYA*LKR*ST*WFYPKP*R*SKPKC*RFR*S*KT**LSSSKS*C
ATK*LQQRSTKRLL*NFEHA*LKRSATQWFHSKS*RRSKPKH*RFR*S*KIK*ISSTES*
QQFQQRTTKCFL*NLEHA*LERRTTQWFHPKLKR*PKSKC*PIVRS*KVK*ISSTES**Q
IQQRTTKCFL*NLTFT*LKRRTTKCFL*NFTFT*LN*RTT*RLHPKP*RRSFSEQRNFSR
S*KAKRCSSTKRGRQ*QA**RRQQQTWQR*RQQAW*RRWQQTWQR*RQQTW*RRQQQTW*
RRRQQAW*RRRQQTW*RRRQQTW*RRRQQTW*RRRQQTW*RRR
>gi|16151623|dbj|AB050857.1| Staphylococcus aureus spa gene for Protein A, complete cds
*FCGFKPFTS*INLSAKYLFYKL*NLHLNLIINIDFSIAIHNSLYYDDFTNTYRGY*FEK
EKHLFNS*TRCRYCICNFRYITYIWWRNTCCKCCATR*SSTKCFLSSVKYA*LKR*ST*W
FYPKP*R*SKPKC*RFR*SSKT**LSSSKS*CATK*LQQRSTKRLL*NLEHA*LKRSAT*
RLHSKS*RRPKPKH*CFR*S*KIKRISSTES**QFQQRTTKCFL*NLEYA*LKRRTTQWF
HPKLKR*PKPKC*PIVRS*KVK*ISSTESG*QIQQRTTKCFL*NLTFT*LKRRTT*RLHP
KP*RRSFSEQRNFSRS*KAKRCSSTKRGRQQKTW*RRRQQTWQRRRQQAW*RRQQKTW*R
RRQQAW*RRQQQTWQRRRQQAW*RRQQQAW*RRRQQAW*RRRQQTW*RRRQRSTCR*TW*
YSK*HCKSKRHYC*QNCCR*QIS**KHDQTWSRTCC**EATSKPCRC*QSSSITRNW*RK
SIHRYNCIWWIIISLRCSVISWTSSRTIKTNNTQR*ISFYPNQF*LIYVD*HI
>gi|46694|emb|X00342.1| Staphylococcus aureus 3' end of the gene for protein A
LNDAQAPKEEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDG
NKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDGNGVHVVKPGDTV
NDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKKQPQTMQMLTKLKHYQKLAKKIHS
SVQLYLVDYH*
>gi|412213|emb|A04518.1| S.aureus gene for structural protein A, duplicate
SK*RDFAVLSLLLPE*IFQQNIYFISCKTYL*I*L*I*ILVLQYIIRYIMMTIQIHTGGI
NLKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNAD
QRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFDKDQQSAFYEILNMPNLNE
AQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYEILNMPNLNEEQ
RNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEILHLPNLNEEQRN
GFIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLTEEQRNGF
IQSLKDDPSVSKEILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPG
KEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDG
NKPGKEDGNGVHVVKLGDTVNDIAKANGTTADKIAADNKLADKNMIKLGQELVVDKKQPQ
TMQS*QSSSIIRNWRRKSIHRYNCIWWIIISLRCSVISWTSSRTIKTNNTQR*IS
>gi|412212|emb|A04517.1| S.aureus gene for structural protein A
LKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANA
>gi|412210|emb|A04512.1| S.aureus gene for structural protein A
SK*RDFAVLSLLLPE*IFQQNIYFISCKTYL*I*L*I*ILVLQYIIRYIMMTIQIHTGGI
NLKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNAD
QRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFDKDQQSAFYEILNMPNLNE
AQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYEILNMPNLNEEQ
RNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEILHLPNLNEEQRN
GFIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLTEEQRNGF
IQSLKDDPSVSKEILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPG
KEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDG
NKPGKEDGNGVHVVKLGDTVNDIAKANGTTADKIAADNKLADKNMIKLGQELVVDKKQPQ
TMQS*QSSSIIRNWRRKSIHRYNCIWWIIISLRCSVISWTSSRTIKTNNTQR*IS
>gi|46692|emb|V01287.1| Staphylococcus aureus gene (spa) fragment encoding protein A
IDFSIAIHNSLYYDDYTNTYRGY*LKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANA
AQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQ
QNNFDKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADN
NFNKEQQNAFYEILNMPNLNEEQRNGFIQS



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