Bio-RetrieveAssemblies
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accession genus species sub_species_or_strain bioproject_accession comment link_to_raw_data
AROB01 Salmonella enterica SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. L945 More than 1 contig per expected gene
AROC01 Salmonella enterica SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. L852 More than 1 contig per expected gene and total size too small
AROD01 Salmonella enterica SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. L927 More than 1 contig per expected gene
AROE01 Salmonella enterica SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. L904 More than 1 contig per expected gene and total size too small
CAAQ01 Salmonella enterica SUBSP. ENTERICA SEROVAR TYPHI STR. 404TY More than 1 contig per expected gene
CAAY01 Salmonella enterica SUBSP. ENTERICA SEROVAR TYPHI STR. AG3 More than 1 contig per expected gene
CBWF01 Klebsiella pneumoniae IS22 Too many proteins
CCBJ01 Salmonella enterica SUBSP. ENTERICA SEROVAR MANHATTAN ENA SAMEA3158455 40 times bigger than a normal Salmonella
CCCD01 Escherichia coli Fragmented and genome much larger than expected
CCCH01 Escherichia coli Fragmented and genome much larger than expected
CCCJ01 Escherichia coli Fragmented and genome much larger than expected
CCCK01 Escherichia coli Fragmented and genome much larger than expected
CDQN01 Escherichia coli Fragmented and genome much larger than expected
CDQS01 Escherichia coli Fragmented and genome much larger than expected
CDQW01 Escherichia coli Fragmented and genome much larger than expected
CDRO01 Escherichia coli Fragmented and genome much larger than expected
CFAX01 Streptococcus pneumoniae Too fragmented
CFDG01 Streptococcus pneumoniae Too small
CFDO01 Streptococcus pneumoniae Too small
CFEQ01 Streptococcus pneumoniae Too big
CFFF01 Streptococcus pneumoniae Too big
CFFU01 Streptococcus pneumoniae Too small
CFFY01 Streptococcus pneumoniae Too big
CFGZ01 Streptococcus pneumoniae Too fragmented
CFYQ01 Bordetella pertussis Too fragmented
CFYS01 Staphylococcus aureus Too many contigs
CFZH01 Bordetella pertussis Too fragmented
CGCX01 Mycobacterium tuberculosis Too fragmented
CGDO01 Mycobacterium tuberculosis Too fragmented
CGFZ01 Bordetella pertussis Too fragmented
CGWE01 Streptococcus pneumoniae Too fragmented
CGWL01 Streptococcus pneumoniae Too big
CGXO01 Streptococcus pneumoniae Too big
CHCS01 Streptococcus pneumoniae Too fragmented
CHCU01 Streptococcus pneumoniae Too fragmented
CHDS01 Mycobacterium tuberculosis Too fragmented
CHED01 Mycobacterium tuberculosis Too fragmented
CHEE01 Mycobacterium tuberculosis Too fragmented
CHHQ01 Streptococcus pneumoniae Too small
CHIQ01 Streptococcus pneumoniae Too small
CHKU01 Bordetella pertussis Too fragmented
CHKZ01 Bordetella pertussis Too fragmented
CHOP01 Streptococcus pneumoniae Too small
CHQU01 Streptococcus pneumoniae Too fragmented
CHRW01 Streptococcus pneumoniae Too big
CHTU01 Streptococcus pneumoniae Too big
CHVB01 Streptococcus pneumoniae Too big
CHVD01 Streptococcus pneumoniae Too big
CHXN01 Streptococcus pneumoniae Too Fragmented
CIBW01 Streptococcus pneumoniae Too fragmented
CIDG01 Streptococcus pneumoniae Too big
CIDK01 Streptococcus pneumoniae Too big
CIGT01 Bordetella pertussis Too fragmented
CIGY01 Bordetella pertussis Too fragmented
CIIO01 Streptococcus pneumoniae Too big
CKLU01 Streptococcus pneumoniae Too fragmented
CKMB01 Streptococcus pneumoniae Too fragmented
CKMC01 Streptococcus pneumoniae Too fragmented
CKMD01 Streptococcus pneumoniae Too fragmented
CKME01 Streptococcus pneumoniae Too fragmented
CKMG01 Streptococcus pneumoniae Too fragmented
CKML01 Streptococcus pneumoniae Too fragmented
CKMN01 Streptococcus pneumoniae Too fragmented
CLCA01 Streptococcus pneumoniae Too fragmented
CLCF01 Streptococcus pneumoniae Too fragmented
CLCT01 Streptococcus pneumoniae Too fragmented
CLCV01 Streptococcus pneumoniae Too fragmented
CLCW01 Streptococcus pneumoniae Too fragmented
CLDM01 Streptococcus pneumoniae Too fragmented
CLMB01 Streptococcus pneumoniae Too fragmented
CMMW01 Streptococcus pneumoniae Too fragmented
CMQU01 Streptococcus pneumoniae Too fragmented
CMTL01 Streptococcus pneumoniae Too fragmented
CNAO01 Streptococcus pneumoniae Too fragmented
CNBX01 Mycobacterium tuberculosis Too fragmented
CNCN01 Mycobacterium tuberculosis Too fragmented
CNCO01 Mycobacterium tuberculosis Too fragmented
CNDE01 Mycobacterium tuberculosis Too fragmented
CNDG01 Mycobacterium tuberculosis Too fragmented
CNFP01 Mycobacterium tuberculosis Too fragmented
CNFQ01 Mycobacterium tuberculosis Too fragmented
CNFR01 Mycobacterium tuberculosis Too fragmented
CNFS01 Mycobacterium tuberculosis Too fragmented
CNFT01 Mycobacterium tuberculosis Too fragmented
CNFU01 Mycobacterium tuberculosis Too fragmented
CNFV01 Mycobacterium tuberculosis Too fragmented
CNFW01 Mycobacterium tuberculosis Too fragmented
CNGE01 Mycobacterium tuberculosis Too fragmented
CNGG01 Mycobacterium tuberculosis Too fragmented
CNIS01 Mycobacterium tuberculosis Too fragmented
CNMV01 Mycobacterium tuberculosis Too fragmented
COIL01 Mycobacterium tuberculosis Too fragmented
CP002797 Escherichia coli UPEC ST131 See PubMed 24706808 for discussion on the quality of this genome
CP006958 Achromobacter xylosoxidans NBRC15126 ATCC27061 NCBI PRJNA209573 Illumina adapter contamination NA
CPAQ01 Mycobacterium tuberculosis Too fragmented
CPMC01 Streptococcus pneumoniae Too fragmented
CPMI01 Streptococcus pneumoniae Too fragmented
CPMN01 Streptococcus pneumoniae Too fragmented
CPNM01 Streptococcus pneumoniae Too fragmented
CPOJ01 Streptococcus pneumoniae Too fragmented
CPPR01 Streptococcus pneumoniae Too fragmented
CPQT01 Streptococcus pneumoniae Too fragmented
CPRN01 Streptococcus pneumoniae Too fragmented
CPSE01 Streptococcus pneumoniae Too fragmented
CPSU01 Streptococcus pneumoniae Too fragmented
CPUM01 Streptococcus pneumoniae Too fragmented
CPWZ01 Mycobacterium tuberculosis Too fragmented
CPZG01 Mycobacterium tuberculosis Too fragmented
CQPL01 Mycobacterium tuberculosis Too fragmented
CQPT01 Mycobacterium tuberculosis Too fragmented
CQPW01 Mycobacterium tuberculosis Too fragmented
CQQC01 Mycobacterium tuberculosis Too fragmented
CQTO01 Mycobacterium tuberculosis Too fragmented
CRBZ01 Streptococcus pneumoniae Too fragmented
CRCI01 Streptococcus pneumoniae Too fragmented
CRCN01 Streptococcus pneumoniae Too fragmented
CRCO01 Streptococcus pneumoniae Too fragmented
CRGB01 Streptococcus pneumoniae Too fragmented
CRRN01 Streptococcus pneumoniae Too fragmented
CRSC01 Streptococcus pneumoniae Too fragmented
CSAU01 Mycobacterium tuberculosis Too fragmented
CSAV01 Mycobacterium tuberculosis Too fragmented
CSAY01 Mycobacterium tuberculosis Too fragmented
CSBI01 Mycobacterium tuberculosis Too fragmented
CSBK01 Mycobacterium tuberculosis Too fragmented
CSLY01 Bordetella pertussis Too fragmented
CSMT01 Staphylococcus aureus Too fragmented
CSNC01 Staphylococcus aureus Too fragmented
CSPC01 Staphylococcus haemolyticus Too fragmented
CSPN01 Staphylococcus aureus Too fragmented
CSQX01 Bordetella pertussis Too fragmented
CSST01 Staphylococcus aureus Too fragmented
CSTN01 Chlamydia trachomatis Too fragmented
CSTQ01 Chlamydia trachomatis Too fragmented
CSTU01 Mycobacterium abscessus Too fragmented
CSVM01 Mycobacterium abscessus Too fragmented
CSVS01 Mycobacterium abscessus Too fragmented
CSZG01 Mycobacterium abscessus Too fragmented
CSZP01 Mycobacterium abscessus Too fragmented
CSZS01 Mycobacterium abscessus Too fragmented
CSZT01 Mycobacterium abscessus Too fragmented
CTBL01 Chlamydia trachomatis Too fragmented
CTRE01 Yersinia enterocolitica Too fragmented
CTZB01 Staphylococcus aureus Too fragmented
CTZD01 Staphylococcus aureus Too fragmented
CUAH01 Staphylococcus aureus Too fragmented
CUAL01 Staphylococcus aureus Too fragmented
CUAN01 Staphylococcus aureus Too fragmented
CUAQ01 Staphylococcus aureus Too fragmented
CUBB01 Staphylococcus aureus Too fragmented
CUCA01 Staphylococcus aureus Too fragmented
CUCB01 Staphylococcus aureus Too fragmented
CUDA01 Staphylococcus aureus Too fragmented
CUDH01 Staphylococcus aureus Too fragmented
CUDK01 Staphylococcus aureus Too fragmented
CUEG01 Staphylococcus aureus Too fragmented
CUEP01 Staphylococcus aureus Too fragmented
CVKS01 Streptococcus pneumoniae Too small
CVLR01 Streptococcus pneumoniae Too fragmented
CVLS01 Streptococcus pneumoniae Too big
CVNZ01 Chlamydia trachomatis More than 1 contig per expected gene NA
CVOF01 Streptococcus pneumoniae Too big
JPIO01 Salmonella enterica SUBSP. ENTERICA SEROVAR WELTEVREDEN Too few proteins
JSHN01 Escherichia coli Half expected size and highly fragmented
JSIP01 Escherichia coli Half expected size and highly fragmented
JSIZ01 Escherichia coli Half expected size and highly fragmented
JSJC01 Escherichia coli Half expected size and highly fragmented
JSJD01 Escherichia coli Half expected size and highly fragmented
JSJH01 Escherichia coli Half expected size and highly fragmented
JSJR01 Escherichia coli Half expected size and highly fragmented
JSJU01 Escherichia coli Half expected size and highly fragmented
JSJV01 Escherichia coli Half expected size and highly fragmented
JSJY01 Escherichia coli Half expected size and highly fragmented
JSKH01 Escherichia coli Half expected size and highly fragmented
JSKQ01 Escherichia coli Half expected size and highly fragmented
JSKV01 Escherichia coli Half expected size and highly fragmented
JSKW01 Escherichia coli Half expected size and highly fragmented
JSKY01 Escherichia coli Half expected size and highly fragmented
JSLH01 Escherichia coli Half expected size and highly fragmented
JSLM01 Escherichia coli Half expected size and highly fragmented
JSLO01 Escherichia coli Half expected size and highly fragmented
JSLS01 Escherichia coli Half expected size and highly fragmented
JSME01 Escherichia coli Half expected size and highly fragmented
JSMM01 Escherichia coli Half expected size and highly fragmented
JSPL01 Escherichia coli Fragmented and genome much larger than expected
JXSA01 Staphylococcus aureus Too many contigs
JXSG01 Staphylococcus aureus Too many contigs
JXSH01 Staphylococcus aureus Too many contigs
NC_017644 Escherichia coli UPEC ST131 See PubMed 24706808 for discussion on the quality of this genome
NZ_AEJH01 Salmonella enterica SUBSP. ENTERICA SEROVAR CHOLERAESUIS STR. SCSA50 Too many proteins
NZ_AEJH01 Salmonella enterica SUBSP. ENTERICA SEROVAR CHOLERAESUIS STR. SCSA50 Number of proteins more than 50% greater than average for Salmonella enterica
NZ_AEUK01 Salmonella enterica SUBSP. ENTERICA SEROVAR DUBLIN STR. SD3246 Too many proteins
NZ_AEUL01 Salmonella enterica SUBSP. ENTERICA SEROVAR GALLINARUM STR. SG9 Too many proteins
NZ_AEUL01 Salmonella enterica SUBSP. ENTERICA SEROVAR GALLINARUM STR. SG9 Number of proteins more than 50% greater than average for Salmonella enterica
NZ_APAG01 Salmonella enterica SUBSP. ENTERICA SEROVAR CUBANA STR. CFSAN001083 Number of proteins more than 50% greater than average for Salmonella enterica
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