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                  <symbol>adhB</symbol>
                  <accession source="ncbi">AAB80874</accession>
                  <name>alcohol dehydrogenase</name>
               </sequence>
            </clade>
            <clade>
               <taxonomy>
                  <scientific_name>Bacillus subtilis</scientific_name>
               </taxonomy>
               <sequence id_source="y">
                  <symbol>gbsB</symbol>
                  <accession source="ncbi">CAB15083</accession>
                  <name>alcohol dehydrogenase</name>
               </sequence>
            </clade>
         </clade>
         <clade>
            <taxonomy>
               <scientific_name>Caenorhabditis elegans</scientific_name>
            </taxonomy>
            <sequence id_source="z">
               <symbol>ADHX</symbol>
               <accession source="ncbi">Q17335</accession>
               <name>alcohol dehydrogenase</name>
               <annotation ref="InterPro:IPR002085"/>
            </sequence>
         </clade>
      </clade>
      <sequence_relation id_ref_0="x" id_ref_1="y" type="paralogy"/>
      <sequence_relation id_ref_0="x" id_ref_1="z" type="orthology"/>
      <sequence_relation id_ref_0="y" id_ref_1="z" type="orthology"/>
   </phylogeny>
   <phylogeny rooted="true">
      <name>similar example, with more detailed sequence data</name>
      <clade>
         <clade>
            <clade>
               <taxonomy>
                  <id provider="NCBI">6645</id>
                  <code>OCTVU</code>
                  <scientific_name>Octopus vulgaris</scientific_name>
               </taxonomy>
               <sequence>
                  <symbol>ADHX</symbol>
                  <accession source="UniProtKB">P81431</accession>
                  <name>Alcohol dehydrogenase class-3</name>
                  <mol_seq>TDATGKPIKCMAAIAWEAKKPLSIEEVEVAPPKSGEVRIKILHSGVCHTD</mol_seq>
                  <annotation ref="EC:1.1.1.1"/>
                  <annotation ref="GO:0004022"/>
               </sequence>
            </clade>
            <clade>
               <taxonomy>
                  <id provider="NCBI">44689</id>
                  <code>DICDI</code>
                  <scientific_name>Dictyostelium discoideum</scientific_name>
               </taxonomy>
               <sequence>
                  <symbol>RT4I1</symbol>
                  <accession source="UniProtKB">Q54II4</accession>
                  <name>Reticulon-4-interacting protein 1 homolog, mitochondrial precursor</name>
                  <mol_seq>MKGILLNGYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRK</mol_seq>
                  <annotation ref="GO:0008270"/>
                  <annotation ref="GO:0016491"/>
               </sequence>
            </clade>
         </clade>
         <clade>
            <taxonomy>
               <id provider="NCBI">1488</id>
               <code>CLOAB</code>
               <scientific_name>Clostridium acetobutylicum</scientific_name>
            </taxonomy>
            <sequence>
               <symbol>ADHB</symbol>
               <accession source="UniProtKB">Q04945</accession>
               <name>NADH-dependent butanol dehydrogenase B</name>
               <mol_seq>MVDFEYSIPTRIFFGKDKINVLGRELKKYGSKVLIVYGGGSIKRNGIYDK</mol_seq>
               <annotation ref="GO:0046872"/>
               <annotation ref="KEGG:Tetrachloroethene degradation"/>
            </sequence>
         </clade>
      </clade>
   </phylogeny>
   <phylogeny rooted="false">
      <name>network, node B is connected to TWO nodes: AB and C</name>
      <clade>
         <clade id_source="ab" branch_length="0.06">
            <name>AB</name>
            <clade id_source="a" branch_length="0.102">
               <name>A</name>
            </clade>
            <clade id_source="b" branch_length="0.23">
               <name>B</name>
            </clade>
         </clade>
         <clade id_source="c" branch_length="0.4">
            <name>C</name>
         </clade>
      </clade>
      <clade_relation id_ref_0="b" id_ref_1="c" type="network_connection"/>
   </phylogeny>
   <phylogeny rooted="true">
      <name>same example, using property elements to indicate a "depth" value for marine organisms</name>
      <clade>
         <clade>
            <name>AB</name>
            <clade>
               <name>A</name>
               <property datatype="xsd:integer" ref="NOAA:depth" applies_to="clade" unit="METRIC:m"> 1200 </property>
            </clade>
            <clade>
               <name>B</name>
               <property datatype="xsd:integer" ref="NOAA:depth" applies_to="clade" unit="METRIC:m"> 2300 </property>
            </clade>
         </clade>
         <clade>
            <name>C</name>
            <property datatype="xsd:integer" ref="NOAA:depth" applies_to="clade" unit="METRIC:m"> 200 </property>
         </clade>
      </clade>