BioPerl
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t/data/phipsi.out view on Meta::CPAN
P-PROTEIN B)
Length = 1034
Score = 9.5 bits (30), Expect = 1.4
Identities = 21/79 (26%), Positives = 39/79 (48%), Gaps = 13/79 (16%)
Query: 231 NSANIGPEEQAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPN 290
pattern 237 ****
NSA PEEQ K++ F P +++ I +T P +I D++++ + G+ + +
Sbjct: 80 NSAT--PEEQTKMAEFVGFPNLDSL----IDATVPKSIRLDSMKYSKFDEGLTESQMIAH 133
Query: 291 SLDHGILIVGYSAKNTIFR 309
D ++KN IF+
Sbjct: 134 MQD-------LASKNKIFK 145
>sp|P49361|GCSA_FLAPR GLYCINE DEHYDROGENASE [DECARBOXYLATING] A, MITOCHONDRIAL PRECURSOR
(GLYCINE DECARBOXYLASE A) (GLYCINE CLEAVAGE SYSTEM
P-PROTEIN A)
Length = 1037
Score = 9.5 bits (30), Expect = 1.4
Identities = 21/79 (26%), Positives = 39/79 (48%), Gaps = 13/79 (16%)
Query: 231 NSANIGPEEQAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPN 290
pattern 237 ****
NSA PEEQ K++ F P +++ I +T P +I D++++ + G+ + +
Sbjct: 83 NSAT--PEEQTKMAEFVGFPNLDSL----IDATVPKSIRLDSMKYSKFDEGLTESQMIAH 136
Query: 291 SLDHGILIVGYSAKNTIFR 309
D ++KN IF+
Sbjct: 137 MQD-------LASKNKIFK 148
>sp|O49852|GCSP_FLATR GLYCINE DEHYDROGENASE [DECARBOXYLATING], MITOCHONDRIAL PRECURSOR
(GLYCINE DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM
P-PROTEIN)
Length = 1034
Score = 7.8 bits (25), Expect = 4.8
Identities = 21/79 (26%), Positives = 38/79 (47%), Gaps = 13/79 (16%)
Query: 231 NSANIGPEEQAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPN 290
pattern 237 ****
NSA PEEQ K++ F +++ I +T P AI D++++ + G+ + +
Sbjct: 80 NSAT--PEEQTKMAEFVGFSNLDSL----IDATVPKAIRLDSMKYSKFDEGLTESQMIAH 133
Query: 291 SLDHGILIVGYSAKNTIFR 309
D ++KN IF+
Sbjct: 134 MQD-------LASKNKIFK 145
>sp|P32767|PDR6_YEAST PLEIOTROPIC DRUG RESISTANCE REGULATORY PROTEIN 6
Length = 1081
Score = 7.4 bits (24), Expect = 6.0
Identities = 25/93 (26%), Positives = 37/93 (38%), Gaps = 17/93 (18%)
Query: 159 HFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEGCNGGLQPNAYNYI-IKNGGIQTESS 217
+F S+N+ +S L E M + E C L P ++I N I +S+
Sbjct: 642 NFTSKNEQEKISNDKL-----EVMVIKTVSTLCETCREELTPYLMHFISFLNTVIMPDSN 696
Query: 218 YPYTAETG--------TQCNFNSANIGPEEQAK 242
pattern 237 ****
+ T QC ++ GPEEQAK
Sbjct: 697 VSHFTRTKLVRSIGYVVQCQVSN---GPEEQAK 726
>sp|O49850|GCSP_FLAAN GLYCINE DEHYDROGENASE [DECARBOXYLATING], MITOCHONDRIAL PRECURSOR
(GLYCINE DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM
P-PROTEIN)
Length = 1034
Score = 6.8 bits (22), Expect = 9.6
Identities = 20/79 (25%), Positives = 38/79 (47%), Gaps = 13/79 (16%)
Query: 231 NSANIGPEEQAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPN 290
pattern 237 ****
NSA PEEQ K++ F +++ I +T P +I D++++ + G+ + +
Sbjct: 80 NSAT--PEEQTKMAEFVGFSNLDSL----IDATVPKSIRLDSMKYSKFDEGLTESQMIAH 133
Query: 291 SLDHGILIVGYSAKNTIFR 309
D ++KN IF+
Sbjct: 134 MQD-------LASKNKIFK 145
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
Sequences not found previously or not previously below threshold:
sp|P04988|CYS1_DICDI CYSTEINE PROTEINASE 1 PRECURSOR 709 0.0
sp|P43295|A494_ARATH PROBABLE CYSTEINE PROTEINASE A494 PRECURSOR 273 4e-73
sp|P25804|CYSP_PEA CYSTEINE PROTEINASE 15A PRECURSOR (TURGOR-RES... 270 2e-72
sp|P43296|RD19_ARATH CYSTEINE PROTEINASE RD19A PRECURSOR 266 6e-71
sp|Q10716|CYS1_MAIZE CYSTEINE PROTEINASE 1 PRECURSOR 252 6e-67
sp|P04989|CYS2_DICDI CYSTEINE PROTEINASE 2 PRECURSOR (PRESTALK C... 250 2e-66
sp|P54640|CYS5_DICDI CYSTEINE PROTEINASE 5 PRECURSOR 238 1e-62
sp|P14658|CYSP_TRYBB CYSTEINE PROTEINASE PRECURSOR 236 4e-62
sp|Q26534|CATL_SCHMA CATHEPSIN L PRECURSOR (SMCL1) 233 3e-61
sp|P35591|CYS1_LEIPI CYSTEINE PROTEINASE 1 PRECURSOR (AMASTIGOTE... 233 3e-61
sp|P25775|LCPA_LEIME CYSTEINE PROTEINASE A PRECURSOR 231 1e-60
sp|P13277|CYS1_HOMAM DIGESTIVE CYSTEINE PROTEINASE 1 PRECURSOR 221 1e-57
sp|P25779|CYSP_TRYCR CRUZIPAIN PRECURSOR (MAJOR CYSTEINE PROTEIN... 221 2e-57
sp|P41721|CATV_NPVBM VIRAL CATHEPSIN (V-CATH) 216 5e-56
sp|P25782|CYS2_HOMAM DIGESTIVE CYSTEINE PROTEINASE 2 PRECURSOR 215 1e-55
sp|P41715|CATV_NPVCF VIRAL CATHEPSIN (V-CATH) 214 2e-55
sp|P25784|CYS3_HOMAM DIGESTIVE CYSTEINE PROTEINASE 3 PRECURSOR 214 2e-55
sp|P07154|CATL_RAT CATHEPSIN L PRECURSOR (MAJOR EXCRETED PROTEIN... 212 7e-55
sp|P06797|CATL_MOUSE CATHEPSIN L PRECURSOR (MAJOR EXCRETED PROTE... 212 1e-54
sp|P12412|CYSP_VIGMU VIGNAIN PRECURSOR (BEAN ENDOPEPTIDASE) (CYS... 209 8e-54
sp|P25783|CATV_NPVAC VIRAL CATHEPSIN (V-CATH) 209 8e-54
sp|P25975|CATL_BOVIN CATHEPSIN L PRECURSOR 208 1e-53
sp|Q40143|CYS3_LYCES CYSTEINE PROTEINASE 3 PRECURSOR 207 2e-53
t/data/phipsi.out view on Meta::CPAN
Sbjct: 271 AIEAGGRAFQLYDSGIFDGSCG-TQLDHGVVAVGYGTEN-----GKDYWIVRNSWGKSWG 324
Query: 327 EQGYIYLRR----GKNTCGVS 343
E GY+ + R CG++
Sbjct: 325 ESGYLRMARNIASSSGKCGIA 345
>sp|Q10717|CYS2_MAIZE CYSTEINE PROTEINASE 2 PRECURSOR
Length = 360
Score = 193 bits (485), Expect = 5e-49
Identities = 115/329 (34%), Positives = 172/329 (51%), Gaps = 32/329 (9%)
Query: 28 QFLEFQDKFNKKY-SHEEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSD 86
+F F ++ K Y S E +RF IF +L + N ++++ G+N+FAD+S +
Sbjct: 58 RFARFAVRYGKSYESAAEVHKRFRIFSESLQLVRSTNRKGLSYR----LGINRFADMSWE 113
Query: 87 EFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPPEEQTAFDWRTRGAVTPVKNQGQCGSC 146
EF+ L + A + + + DWR G V+PVKNQG CGSC
Sbjct: 114 EFRATRLGAAQNCS------ATLTGNHRMRAAAVALPETKDWREDGIVSPVKNQGHCGSC 167
Query: 147 WSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEGCNGGLQPNAYNYI 206
W+FSTTG +E + + K +SLSEQ LVDC + GCNGGL A+ YI
Sbjct: 168 WTFSTTGALEAAYTQATGKPISLSEQQLVDCGFAFNNF--------GCNGGLPSQAFEYI 219
Query: 207 IKNGGIQTESSYPYTAETGTQCNFNSANIGPEEQAKISNFTMIPKNETVMAGYIVSTGPL 266
pattern 237 ****
NGG+ TE SYPY G C F + N+G + + N T+ ++E A +V P+
Sbjct: 220 KYNGGLDTEESYPYQGVNGI-CKFKNENVGVKVLDSV-NITLGAEDELKDAVGLVR--PV 275
Query: 267 AIAADAVE-WQFYIGGVF---DIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWG 322
++A + + ++ Y GV+ P ++H +L VGY ++ +PYW++KNSWG
Sbjct: 276 SVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVED-----GVPYWLIKNSWG 330
Query: 323 ADWGEQGYIYLRRGKNTCGVSNFVSTSII 351
ADWG++GY + GKN CGV+ S I+
Sbjct: 331 ADWGDEGYFKMEMGKNMCGVATCASYPIV 359
>sp|P14080|PAP2_CARPA CHYMOPAPAIN PRECURSOR (PAPAYA PROTEINASE II) (PPII)
Length = 352
Score = 192 bits (482), Expect = 1e-48
Identities = 128/319 (40%), Positives = 169/319 (52%), Gaps = 43/319 (13%)
Query: 35 KFNKKY-SHEEYLERFEIFKSNLGKIEELNLIAINHKADTKF--GVNKFADLSSDEFKNY 91
K NK Y S +E + RFEIF+ NL I+E N K + + G+N FADLS+DEFK
Sbjct: 54 KHNKIYESIDEKIYRFEIFRDNLMYIDETN------KKNNSYWLGLNGFADLSNDEFKKK 107
Query: 92 YLNNKEAIFTDDLPVADYLDDE-FINSIPPEEQTAFDWRTRGAVTPVKNQGQCGSCWSFS 150
Y+ +D ++ D+E F + DWR +GAVTPVKNQG CGSCW+FS
Sbjct: 108 YVG----FVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFS 163
Query: 151 TTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEGCNGGLQPNAYNYIIKNG 210
T VEG + I L+ LSEQ LVDCD GC GG Q + Y + N
Sbjct: 164 TIATVEGINKIVTGNLLELSEQELVDCDKH----------SYGCKGGYQTTSLQY-VANN 212
Query: 211 GIQTESSYPYTAETGTQCNFNSANIGPEEQAKISNFTMIPKN-ETVMAGYIVSTGPLAIA 269
pattern 237 ****
G+ T YPY A+ +C A P + KI+ + +P N ET G + + PL++
Sbjct: 213 GVHTSKVYPYQAKQ-YKCR---ATDKPGPKVKITGYKRVPSNCETSFLGALANQ-PLSVL 267
Query: 270 ADA--VEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGE 327
+A +Q Y GVFD PC LDH + VGY + KN Y I+KNSWG +WGE
Sbjct: 268 VEAGGKPFQLYKSGVFDGPCG-TKLDHAVTAVGYGTSD---GKN--YIIIKNSWGPNWGE 321
Query: 328 QGYIYLRR----GKNTCGV 342
+GY+ L+R + TCGV
Sbjct: 322 KGYMRLKRQSGNSQGTCGV 340
>sp|P00786|CATH_RAT CATHEPSIN H PRECURSOR (CATHEPSIN B3) (CATHEPSIN BA)
Length = 333
Score = 192 bits (482), Expect = 1e-48
Identities = 121/333 (36%), Positives = 173/333 (51%), Gaps = 38/333 (11%)
Query: 25 EQSQFLEFQDKFNKKYSHEEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLS 84
E+ F + + K YS EY R ++F +N KI+ N NH K G+N+F+D+S
Sbjct: 29 EKFHFTSWMKQHQKTYSSREYSHRLQVFANNWRKIQAHN--QRNHTF--KMGLNQFSDMS 84
Query: 85 SDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPPEEQTAFDWRTRG-AVTPVKNQGQC 143
E K+ YL ++ ++ P ++ DWR +G V+PVKNQG C
Sbjct: 85 FAEIKHKYLWSEPQN-------CSATKSNYLRGTGPYP-SSMDWRKKGNVVSPVKNQGAC 136
Query: 144 GSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEGCNGGLQPNAY 203
GSCW+FSTTG +E I+ K+++L+EQ LVDC + + GC GGL A+
Sbjct: 137 GSCWTFSTTGALESAVAIASGKMMTLAEQQLVDC--------AQNFNNHGCQGGLPSQAF 188
Query: 204 NYIIKNGGIQTESSYPYTAETGTQCNFNSANIGPEEQ-AKISNFTMIPKN-ETVMAGYIV 261
pattern 237 ****
YI+ N GI E SYPY + G QC FN PE+ A + N I N E M +
Sbjct: 189 EYILYNKGIMGEDSYPYIGKNG-QCKFN-----PEKAVAFVKNVVNITLNDEAAMVEAVA 242
Query: 262 STGPLAIAADAVE-WQFYIGGVFDI-PCN--PNSLDHGILIVGYSAKNTIFRKNMPYWIV 317
P++ A + E + Y GV+ C+ P+ ++H +L VGY +N + YWIV
Sbjct: 243 LYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLL-----YWIV 297
Query: 318 KNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSI 350
KNSWG++WG GY + RGKN CG++ S I
Sbjct: 298 KNSWGSNWGNNGYFLIERGKNMCGLAACASYPI 330
>sp|P25251|CYS4_BRANA CYSTEINE PROTEINASE COT44 PRECURSOR
Length = 328
Score = 190 bits (477), Expect = 5e-48
Identities = 114/304 (37%), Positives = 164/304 (53%), Gaps = 29/304 (9%)
Query: 47 ERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPV 106
ERF IFK NL I+ N N A K G+ FA+L++DE+++ YL + +
Sbjct: 27 ERFNIFKDNLRFIDLHN--ENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRR-ITK 83
Query: 107 ADYLDDEFINSIPPEE-QTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNK 165
A ++ ++ ++ +E DWR +GAV +K+QG CGSCW+FST VEG + I +
Sbjct: 84 AKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGE 143
Query: 166 LVSLSEQNLVDCDHECMEYEGEEACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETG 225
LVSLSEQ LVDCD ++ ++GCNGGL A+ +I+KNGG+ TE YPY G
Sbjct: 144 LVSLSEQELVDCD---------KSYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYHGTNG 194
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