view release on metacpan or  search on metacpan

t/data/phi.out  view on Meta::CPAN

            P-PROTEIN B)
          Length = 1034

 Score =  9.5 bits (30), Expect = 1.4
 Identities = 21/79 (26%), Positives = 39/79 (48%), Gaps = 13/79 (16%)

Query:  231 NSANIGPEEQAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPN 290
pattern 237       ****
            NSA   PEEQ K++ F   P  +++    I +T P +I  D++++  +  G+ +     +
Sbjct:  80  NSAT--PEEQTKMAEFVGFPNLDSL----IDATVPKSIRLDSMKYSKFDEGLTESQMIAH 133

Query:  291 SLDHGILIVGYSAKNTIFR 309
              D        ++KN IF+
Sbjct:  134 MQD-------LASKNKIFK 145


>sp|P49361|GCSA_FLAPR GLYCINE DEHYDROGENASE [DECARBOXYLATING] A, MITOCHONDRIAL PRECURSOR
            (GLYCINE DECARBOXYLASE A) (GLYCINE CLEAVAGE SYSTEM
            P-PROTEIN A)
          Length = 1037

 Score =  9.5 bits (30), Expect = 1.4
 Identities = 21/79 (26%), Positives = 39/79 (48%), Gaps = 13/79 (16%)

Query:  231 NSANIGPEEQAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPN 290
pattern 237       ****
            NSA   PEEQ K++ F   P  +++    I +T P +I  D++++  +  G+ +     +
Sbjct:  83  NSAT--PEEQTKMAEFVGFPNLDSL----IDATVPKSIRLDSMKYSKFDEGLTESQMIAH 136

Query:  291 SLDHGILIVGYSAKNTIFR 309
              D        ++KN IF+
Sbjct:  137 MQD-------LASKNKIFK 148


>sp|O49852|GCSP_FLATR GLYCINE DEHYDROGENASE [DECARBOXYLATING], MITOCHONDRIAL PRECURSOR
            (GLYCINE DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM
            P-PROTEIN)
          Length = 1034

 Score =  7.8 bits (25), Expect = 4.8
 Identities = 21/79 (26%), Positives = 38/79 (47%), Gaps = 13/79 (16%)

Query:  231 NSANIGPEEQAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPN 290
pattern 237       ****
            NSA   PEEQ K++ F      +++    I +T P AI  D++++  +  G+ +     +
Sbjct:  80  NSAT--PEEQTKMAEFVGFSNLDSL----IDATVPKAIRLDSMKYSKFDEGLTESQMIAH 133

Query:  291 SLDHGILIVGYSAKNTIFR 309
              D        ++KN IF+
Sbjct:  134 MQD-------LASKNKIFK 145


>sp|P32767|PDR6_YEAST PLEIOTROPIC DRUG RESISTANCE REGULATORY PROTEIN 6
          Length = 1081

 Score =  7.4 bits (24), Expect = 6.0
 Identities = 25/93 (26%), Positives = 37/93 (38%), Gaps = 17/93 (18%)

Query:  159 HFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEGCNGGLQPNAYNYI-IKNGGIQTESS 217
            +F S+N+   +S   L     E M  +      E C   L P   ++I   N  I  +S+
Sbjct:  642 NFTSKNEQEKISNDKL-----EVMVIKTVSTLCETCREELTPYLMHFISFLNTVIMPDSN 696

Query:  218 YPYTAETG--------TQCNFNSANIGPEEQAK 242
pattern 237                            ****
              +   T          QC  ++   GPEEQAK
Sbjct:  697 VSHFTRTKLVRSIGYVVQCQVSN---GPEEQAK 726


>sp|O49850|GCSP_FLAAN GLYCINE DEHYDROGENASE [DECARBOXYLATING], MITOCHONDRIAL PRECURSOR
            (GLYCINE DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM
            P-PROTEIN)
          Length = 1034

 Score =  6.8 bits (22), Expect = 9.6
 Identities = 20/79 (25%), Positives = 38/79 (47%), Gaps = 13/79 (16%)

Query:  231 NSANIGPEEQAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPN 290
pattern 237       ****
            NSA   PEEQ K++ F      +++    I +T P +I  D++++  +  G+ +     +
Sbjct:  80  NSAT--PEEQTKMAEFVGFSNLDSL----IDATVPKSIRLDSMKYSKFDEGLTESQMIAH 133

Query:  291 SLDHGILIVGYSAKNTIFR 309
              D        ++KN IF+
Sbjct:  134 MQD-------LASKNKIFK 145


  Database: /home/peter/blast/data/swissprot
    Posted date:  Oct 10, 2000 10:43 AM
  Number of letters in database: 31,984,247
  Number of sequences in database:  88,780
  
Lambda     K      H      C
   0.270   0.0470    0.230    0.500 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1047
Number of Sequences: 88780
Number of extensions: 1047
Number of successful extensions: 36
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 351
length of database: 31,984,247
effective HSP length: 50
effective length of query: 301
effective length of database: 27,545,247
effective search space: 8291119347
effective search space used: 8291119347
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 65 (29.7 bits)