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format-version: 1.2
date: 14:07:2009 13:33
auto-generated-by: OBO-Edit 2.0
subsetdef: goslim_generic "Generic GO slim"
subsetdef: goslim_goa "GOA and proteome slim"
subsetdef: goslim_pir "PIR GO slim"
subsetdef: goslim_plant "Plant GO slim"
subsetdef: test_goslim "Test GO slim"
subsetdef: test_next_goslim "Second test set"
synonymtypedef: systematic_synonym "Systematic synonym" EXACT
default-namespace: test_ontology
remark: cvs version: $Revision: 1.239 $
data-version: dv-1
saved-by: cjm
subsetdef: ss1 "ss1 desc"
subsetdef: ss2 "ss2 desc"
subsetdef: relslim "relslim"
import: round_import.obo
synonymtypedef: st1 "synonym type 1"
synonymtypedef: st2 "synonym type 2" EXACT
idspace: X http://x.org/
default-namespace: default
!default-relationship-id
idmapping: abc def
remark: this is a meaningless file designed to test roundtripping of all tags
relax-unique-name-assumption-for-idspace: FOO
treat-xrefs-as-equivalent: FOO
treat-xrefs-as-is_a: FOO
treat-xrefs-as-genus-differentia: CL part_of organism
treat-xrefs-as-relationship: GO part_of
treat-xrefs-as-unique: FOO

[Term]
id: id-x
name: name-x
namespace: ns-x
alt_id: id-x-alt1
alt_id: id-x-alt2
def: "foo" [PMID:1, foo:bar "bleh"]
comment: hjkjh
subset: ss1
subset: ss2
synonym: "s1-exact" EXACT []
synonym: "s1-exact-cited" EXACT [PMID:2]
synonym: "s1-exact-t" EXACT st2 [PMID:2]
xref: X:1
xref: CL:1
xref: GO:2
is_a: x-p1
is_a: x-p2
is_a: x-p2-i {implied="true"}
intersection_of: x-g
intersection_of: x-r x-d
union_of: xu1
union_of: xu2
disjoint_from: x-c
relationship: part_of id-y
relationship: develops_from id-z {implied="true"}
equivalent_to: a^b^rel(c)
formula: "" KIF []
created_by: someone
creation_date: 2009-04-28T04:41:16Z

[Term]
id: id-y
name: name-y
def: "foo" []
is_a: y-p1
is_a: y-p2 {implied="true",method="reasoner-1"}
union_of: yu1
union_of: yu2
disjoint_from: y-c

[Term]
id: obs-1
is_obsolete: true
replaced_by: obs-1-r1
replaced_by: obs-1-r2

[Term]
id: obs-2
is_obsolete: true
consider: obs-2-r1
consider: obs-2-r2

[Typedef]
id: r1
name: r1-name
namespace: r1-ont
alt_id: r1-old1
alt_id: r1-old2
def: "x ends_before j iff ω(x) < j" [SO:cjm]
comment: ...
subset: relslim
synonym: "r1s1" EXACT []
xref: Y:1
domain: a
range: a
is_anti_symmetric: true
is_cyclic: true 
is_reflexive: true 
is_irreflexive: true 
is_symmetric: true 
is_transitive: true 
is_functional: true 
is_inverse_functional: true 
is_metadata_tag: false
is_a: r1-p1  
intersection_of: r1i1
intersection_of: r1i2
union_of: r1u1
union_of: r1u2
inverse_of: r1inv
inverse_of_on_instance_level: r1inv_i
transitive_over: r1to
holds_over_chain: r1x r1y
holds_over_chain: r1x2 r1y2
equivalent_to_chain: r1x r1y
equivalent_to_chain: r1x2 r1y2
disjoint_over: r1disc
relationship: meta-r r2
equivalent_to: r1-eq
is_obsolete: false
formula: "r1(x,y) <-> ω(x) < j" Prover9 []
complement_of: r1neg

[Instance]
id: i1
name: i1-name
namespace: i1-ns
alt_id: i1-id2
comment: test
synonym: "i1 s1" RELATED []
xref: X:i1
instance_of: C1
instance_of: C2 {implied="true"}
property_value: p1 "foo" xsd:string

[Term]
id: GO:0000001
name: test term GO:0000001
subset: test_goslim
subset: test_next_goslim
is_a: GO:0000008 ! test term GO:0000008
relationship: part_of GO:0000008 ! test term GO:0000008
relationship: regulates GO:0000008 ! test term GO:0000008

[Term]
id: GO:0000002
name: test term GO:0000002
subset: test_goslim
subset: test_next_goslim
is_a: GO:0000006 ! test term GO:0000006
is_a: GO:0000007 ! test term GO:0000007

[Term]
id: GO:0000003
name: test term GO:0000003
subset: test_goslim
subset: test_next_goslim
relationship: part_of GO:0000007 ! test term GO:0000007

[Term]
id: GO:0000004
name: test term GO:0000004
subset: test_goslim
is_a: GO:0000012 ! test term GO:0000012
relationship: positively_regulates GO:0000015 ! test term GO:0000015
relationship: negatively_regulates GO:0000016 ! test term GO:0000016

[Term]
id: GO:0000005
name: test term GO:0000005
subset: test_goslim
subset: test_next_goslim
relationship: regulates GO:0000008 ! test term GO:0000008

[Term]
id: GO:0000006
name: test term GO:0000006
subset: test_goslim
is_a: GO:0000009 ! test term GO:0000009

[Term]