Bio-GFF3

 view release on metacpan or  search on metacpan

t/data/knownGene_out_of_order.dumped_result  view on Meta::CPAN

              'score' => undef,
              'end' => '90527968',
              'derived_features' => [],
              'phase' => undef,
              'strand' => '-',
              'type' => 'mRNA',
              'attributes' => {
                                'Alias' => [
                                             'OMD'
                                           ],
                                'ID' => [
                                          'AB000114'
                                        ],
                                'Ontology_term' => [
                                                     'GO:0007155',
                                                     'GO:0005194',
                                                     'GO:0005578'
                                                   ],
                                'Note' => [
                                            'osteomodulin'
                                          ],
                                'Dbxref' => [
                                              'AFFX-U95:41031_at',
                                              'Genbank-protein:BAA19055',
                                              'Unigene:Hs.94070',
                                              'AFFX-U133:205907_s_at',
                                              'Genbank-mRNA:AB000114',
                                              'Locuslink:4958',
                                              'Swissprot:Q99983',
                                              'Swissprot:OMD_HUMAN',
                                              'Refseq-mRNA:NM_005014',
                                              'Refseq-protein:NP_005005',
                                              'PFAM:PF01462',
                                              'PFAM:00560'
                                            ]
                              },
              'start' => '90517946'
            },
            {
              'source' => 'UCSC',
              'seq_id' => 'chr30',
              'child_features' => [
                                    [],
                                    [],
                                    [],
                                    [],
                                    [],
                                    []
                                  ],
              'score' => undef,
              'end' => '45664',
              'derived_features' => [],
              'phase' => undef,
              'strand' => '-',
              'type' => 'mRNA',
              'attributes' => {
                                'ID' => [
                                          'AB000114'
                                        ],
                                'Note' => [
                                            'guess what this thing has another location'
                                          ]
                              },
              'start' => '11234'
            }
          ],
          [
            {
              'source' => 'BLASTN',
              'seq_id' => 'chr9',
              'child_features' => [],
              'score' => '0.0',
              'end' => '90521248',
              'derived_features' => [],
              'phase' => undef,
              'strand' => '+',
              'type' => 'match',
              'attributes' => {
                                'ID' => [
                                          'blastresult.1'
                                        ],
                                'Target' => [
                                              'BC046356.1 178 1828'
                                            ],
                                'Gap' => [
                                           'M78 I759 M1561'
                                         ]
                              },
              'start' => '90518850'
            }
          ],
        ];
$VAR1->[2][0]{'derived_features'}[0] = $VAR1->[2][0]{'child_features'}[1];
$VAR1->[2][0]{'derived_features'}[1] = $VAR1->[2][0]{'child_features'}[8];
$VAR1->[3][0]{'child_features'}[0] = $VAR1->[2][0]{'child_features'}[1];
$VAR1->[3][0]{'child_features'}[4] = $VAR1->[2][0]{'child_features'}[8];
$VAR1->[3][1]{'child_features'}[0] = $VAR1->[3][0]{'child_features'}[1];
$VAR1->[3][1]{'child_features'}[1] = $VAR1->[3][0]{'child_features'}[2];
$VAR1->[3][1]{'child_features'}[2] = $VAR1->[3][0]{'child_features'}[3];
$VAR1->[3][1]{'child_features'}[3] = $VAR1->[2][0]{'child_features'}[8];
$VAR1->[3][1]{'child_features'}[4] = $VAR1->[3][0]{'child_features'}[5];
$VAR1->[3][1]{'child_features'}[5] = $VAR1->[3][0]{'child_features'}[6];
$VAR1;



( run in 1.245 second using v1.01-cache-2.11-cpan-5b529ec07f3 )