Bio-GFF3
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t/data/knownGene_out_of_order.dumped_result view on Meta::CPAN
'score' => undef,
'end' => '90527968',
'derived_features' => [],
'phase' => undef,
'strand' => '-',
'type' => 'mRNA',
'attributes' => {
'Alias' => [
'OMD'
],
'ID' => [
'AB000114'
],
'Ontology_term' => [
'GO:0007155',
'GO:0005194',
'GO:0005578'
],
'Note' => [
'osteomodulin'
],
'Dbxref' => [
'AFFX-U95:41031_at',
'Genbank-protein:BAA19055',
'Unigene:Hs.94070',
'AFFX-U133:205907_s_at',
'Genbank-mRNA:AB000114',
'Locuslink:4958',
'Swissprot:Q99983',
'Swissprot:OMD_HUMAN',
'Refseq-mRNA:NM_005014',
'Refseq-protein:NP_005005',
'PFAM:PF01462',
'PFAM:00560'
]
},
'start' => '90517946'
},
{
'source' => 'UCSC',
'seq_id' => 'chr30',
'child_features' => [
[],
[],
[],
[],
[],
[]
],
'score' => undef,
'end' => '45664',
'derived_features' => [],
'phase' => undef,
'strand' => '-',
'type' => 'mRNA',
'attributes' => {
'ID' => [
'AB000114'
],
'Note' => [
'guess what this thing has another location'
]
},
'start' => '11234'
}
],
[
{
'source' => 'BLASTN',
'seq_id' => 'chr9',
'child_features' => [],
'score' => '0.0',
'end' => '90521248',
'derived_features' => [],
'phase' => undef,
'strand' => '+',
'type' => 'match',
'attributes' => {
'ID' => [
'blastresult.1'
],
'Target' => [
'BC046356.1 178 1828'
],
'Gap' => [
'M78 I759 M1561'
]
},
'start' => '90518850'
}
],
];
$VAR1->[2][0]{'derived_features'}[0] = $VAR1->[2][0]{'child_features'}[1];
$VAR1->[2][0]{'derived_features'}[1] = $VAR1->[2][0]{'child_features'}[8];
$VAR1->[3][0]{'child_features'}[0] = $VAR1->[2][0]{'child_features'}[1];
$VAR1->[3][0]{'child_features'}[4] = $VAR1->[2][0]{'child_features'}[8];
$VAR1->[3][1]{'child_features'}[0] = $VAR1->[3][0]{'child_features'}[1];
$VAR1->[3][1]{'child_features'}[1] = $VAR1->[3][0]{'child_features'}[2];
$VAR1->[3][1]{'child_features'}[2] = $VAR1->[3][0]{'child_features'}[3];
$VAR1->[3][1]{'child_features'}[3] = $VAR1->[2][0]{'child_features'}[8];
$VAR1->[3][1]{'child_features'}[4] = $VAR1->[3][0]{'child_features'}[5];
$VAR1->[3][1]{'child_features'}[5] = $VAR1->[3][0]{'child_features'}[6];
$VAR1;
( run in 1.245 second using v1.01-cache-2.11-cpan-5b529ec07f3 )