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t/data/interpro.xml  view on Meta::CPAN

    <db_xref db="BLOCKS" dbkey="IPB000010"/>
    <db_xref db="MEROPS" dbkey="C1"/>
    <db_xref db="MEROPS" dbkey="C13"/>
    <db_xref db="MEROPS" dbkey="I25"/>
    <db_xref db="MEROPS" dbkey="M10"/>
    <db_xref db="MEROPS" dbkey="M12"/>
    <db_xref db="PROSITEDOC" dbkey="PDOC00259"/>
  </external_doc_list>
  <structure_db_links>
    <db_xref db="PDB" dbkey="1a67"/>
    <db_xref db="PDB" dbkey="1a90"/>
    <db_xref db="PDB" dbkey="1cew"/>
    <db_xref db="PDB" dbkey="1cyu"/>
    <db_xref db="PDB" dbkey="1cyv"/>
    <db_xref db="PDB" dbkey="1dvc"/>
    <db_xref db="PDB" dbkey="1dvd"/>
    <db_xref db="PDB" dbkey="1eqk"/>
    <db_xref db="PDB" dbkey="1g96"/>
    <db_xref db="PDB" dbkey="1gd3"/>
    <db_xref db="PDB" dbkey="1gd4"/>
    <db_xref db="PDB" dbkey="1n9j"/>
    <db_xref db="PDB" dbkey="1nb3"/>
    <db_xref db="PDB" dbkey="1nb5"/>
    <db_xref db="PDB" dbkey="1r4c"/>
    <db_xref db="PDB" dbkey="1rn7"/>
    <db_xref db="PDB" dbkey="1roa"/>
    <db_xref db="PDB" dbkey="1stf"/>
    <db_xref db="PDB" dbkey="1tij"/>
    <db_xref db="PDB" dbkey="1yvb"/>
    <db_xref db="CATH" dbkey="3.10.450.10"/>
    <db_xref db="SCOP" dbkey="d.17.1.2"/>
  </structure_db_links>
  <taxonomy_distribution>
    <taxon_data name="Bacteria" proteins_count="39"/>
    <taxon_data name="Eukaryota" proteins_count="873"/>
    <taxon_data name="Arabidopsis thaliana" proteins_count="11"/>
    <taxon_data name="Rice spp." proteins_count="35"/>
    <taxon_data name="Other Eukaryotes" proteins_count="3"/>
    <taxon_data name="Other Eukaryotes" proteins_count="3"/>
    <taxon_data name="Nematoda" proteins_count="3"/>
    <taxon_data name="Caenorhabditis elegans" proteins_count="3"/>
    <taxon_data name="Arthropoda" proteins_count="122"/>
    <taxon_data name="Fruit Fly" proteins_count="6"/>
    <taxon_data name="Chordata" proteins_count="376"/>
    <taxon_data name="Human" proteins_count="40"/>
    <taxon_data name="Mouse" proteins_count="69"/>
    <taxon_data name="Virus" proteins_count="44"/>
    <taxon_data name="Plastid Group" proteins_count="305"/>
    <taxon_data name="Green Plants" proteins_count="305"/>
    <taxon_data name="Metazoa" proteins_count="546"/>
    <taxon_data name="Plastid Group" proteins_count="11"/>
    <taxon_data name="Other Eukaryotes" proteins_count="4"/>
  </taxonomy_distribution>
  <sec_list>
    <sec_ac acc="IPR001713"/>
  </sec_list>
</interpro>
<interpro id="IPR000011" protein_count="359" short_name="UBQ-activ_enz_E1-like" type="Region">
  <name>Ubiquitin-activating enzyme, E1-like</name>
  <abstract>
<p>The post-translational attachment of ubiquitin (<db_xref db="INTERPRO" dbkey="IPR000626"/>) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [<cite idref=...
</abstract>
  <class_list>
    <classification id="GO:0006464" class_type="GO">
      <category>Biological Process</category>
      <description>protein modification process</description>
    </classification>
    <classification id="GO:0008641" class_type="GO">
      <category>Molecular Function</category>
      <description>small protein activating enzyme activity</description>
    </classification>
  </class_list>
  <example_list>
    <example>
      <db_xref db="SWISSPROT" dbkey="A2VE14"/>
    </example>
    <example>
      <db_xref db="SWISSPROT" dbkey="O42939"/>
    </example>
    <example>
      <db_xref db="SWISSPROT" dbkey="P22515"/>
    </example>
    <example>
      <db_xref db="SWISSPROT" dbkey="Q02053"/>
    </example>
    <example>
      <db_xref db="SWISSPROT" dbkey="Q9UBE0"/>
    </example>
  </example_list>
  <pub_list>
    <publication id="PUB00015619">
      <author_list>Burger AM, Seth AK.</author_list>
      <title>The ubiquitin-mediated protein degradation pathway in cancer: therapeutic implications.</title>
      <db_xref db="PUBMED" dbkey="15454246"/>
      <journal>Eur. J. Cancer</journal>
      <location issue="15" pages="2217-29" volume="40"/>
      <year>2004</year>
    </publication>
    <publication id="PUB00015620">
      <author_list>Passmore LA, Barford D.</author_list>
      <title>Getting into position: the catalytic mechanisms of protein ubiquitylation.</title>
      <db_xref db="PUBMED" dbkey="14998368"/>
      <journal>Biochem. J.</journal>
      <location issue="Pt 3" pages="513-25" volume="379"/>
      <year>2004</year>
    </publication>
    <publication id="PUB00015621">
      <author_list>Pickart CM, Fushman D.</author_list>
      <title>Polyubiquitin chains: polymeric protein signals.</title>
      <db_xref db="PUBMED" dbkey="15556404"/>
      <location issue="6" pages="610-6" volume="8"/>
      <year>2004</year>
    </publication>
    <publication id="PUB00015625">
      <author_list>Sun L, Chen ZJ.</author_list>
      <title>The novel functions of ubiquitination in signaling.</title>
      <db_xref db="PUBMED" dbkey="15196553"/>
      <journal>Curr. Opin. Cell Biol.</journal>
      <location issue="2" pages="119-26" volume="16"/>
      <year>2004</year>
    </publication>