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genewise $Name: not supported by cvs2svn $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright

Query protein:       SINFRUP00000067802
Comp Matrix:         blosum62.bla
Gap open:            12
Gap extension:       2
Start/End            default
Target Sequence      Scaffold_2042.1
Strand:              forward
Start/End (protein)  default
Gene Paras:          human.gf
Codon Table:         codon.table
Subs error:          1e-05
Indel error:         1e-05
Model splice?        model
Model codon bias?    flat
Model intron bias?   tied
Null model           syn
Algorithm            623

genewise output
Score 2054.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SINFRUP00000067    1 LDEDQLSHSSSRLSRSPLKGVKKAKIMQCKVTLLDNSDYTIDVE      
                     LDEDQLSHSSSRLSRSPLKGVKKAKIMQCKVTLLDNSDYTIDVE      
                     LDEDQLSHSSSRLSRSPLKGVKKAKIMQCKVTLLDNSDYTIDVE      
Scaffold_2042.122265 cgggcttcaaacctatccaggaagaaactagatcgatgtaaggg      
                     taaaatcaggggtcgcctagtaacattagatcttaacaactata      
                     gcgcgactccttccgtcgaacgaggaggtacaggcccccattag      


SINFRUP00000067   45                            KGARGQMLFDKVCEHLNLLERD 
                                                KGARGQMLFDKVCEHLNLLERD 
                                                KGARGQMLFDKVCEHLNLLERD 
Scaffold_2042.122397 GTGAGCA  Intron 1       CAGaggagcactgagtgccatcgag 
                     <0-----[22397  :  24223]-0>agcggatttaatgaatattaga 
                                                aacgcagcttaatgtatacgac 


SINFRUP00000067   67 YFGITYRDVENQK                           NWLDPSKEL 
                     YFGITYRDVENQK                           NWLDPSKEL 
                     YFGITYRDVENQK                           NWLDPSKEL 
Scaffold_2042.124290 ttgaatagggacaGTAAATA  Intron 2       CAGatcgctagc 
                     atgtcagataaaa<0-----[24329  :  24470]-0>agtaccaat 
                     ctccatactgtgg                           tggtttagg 


SINFRUP00000067   89 KKQIR                              GPWNFAFNVKFYPP 
                     KKQIR                              GPWNFAFNVKFYPP 
                     KKQIR          T:T[act]            GPWNFAFNVKFYPP 
Scaffold_2042.124498 aacacAGTAAGCA  Intron 3       CAGCTgctatgtagattcc 
                     aaatg <1-----[24514  :  24586]-1>  gcgatctatatacc 
                     aggcg                              tcgctcctcgtcta 


SINFRUP00000067  109 DPVQLAEDIT                              YYLCLQLRD 
                     DPVQLAEDIT                              YYLCLQLRD 
                     DPVQLAEDIT           R:R[agg]           YYLCLQLRD 
Scaffold_2042.124631 gcgccgggaaAGGTAAGAG  Intron 4       CAGGttttcccag 
                     actatcaatc  <2-----[24663  :  24816]-2> aatgtatga 
                     ttcggtgcca                              ctgtgggat 


SINFRUP00000067  129 DVVSGRLPCSFATHTVLGSYTVQSELGDYDHEELGSDYLSELRLAPNQT 
                     DVVSGRLPCSFATHTVLGSYTVQSELGDYDHEELGSDYLSELRLAPNQT 
                     DVVSGRLPCSFATHTVLGSYTVQSELGDYDHEELGSDYLSELRLAPNQT 
Scaffold_2042.124845 gggtgccctttgacagcgttagctgcggtgcggcgagtcagcccgcaca 
                     attcggtcgctccacttgcactacatgaaaaaatggaatgatgtccaac 
                     tgtgctgccttcccatactcgggtagactctgggccccctggctaccgc 


SINFRUP00000067  178 KELEEKVMELHKSY                              GMTPG 
                     KELEEKVMELHKSY                              GMTPG 
                     KELEEKVMELHKSY           K:K[aag]           GMTPG 
Scaffold_2042.124992 agcggagagccaatAAGTTGGTT  Intron 5       CAGGgaacg 
                     aataaattataaga  <2-----[25036  :  25161]-2> gtccg 
                     agtgagcgaccgcc                              ggatg