BioPerl
view release on metacpan or search on metacpan
t/data/entrezgene_bug3453.dat view on Meta::CPAN
strand plus,
id gi 224589823
},
int {
from 59335576,
to 59335689,
strand plus,
id gi 224589823
},
int {
from 59336119,
to 59336230,
strand plus,
id gi 224589823
},
int {
from 59336347,
to 59336525,
strand plus,
id gi 224589823
},
int {
from 59337090,
to 59337235,
strand plus,
id gi 224589823
},
int {
from 59337948,
to 59338149,
strand plus,
id gi 224589823
},
int {
from 59338753,
to 59338858,
strand plus,
id gi 224589823
},
int {
from 59340193,
to 59340277,
strand plus,
id gi 224589823
},
int {
from 59342486,
to 59343487,
strand plus,
id gi 224589823
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
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source {
{
src {
db "CCDS",
tag str "CCDS14771.4"
},
anchor "CCDS14771.4"
}
},
genomic-coords {
mix {
int {
from 59330430,
to 59330457,
strand plus,
id gi 224589823
},
int {
from 59335576,
to 59335689,
strand plus,
id gi 224589823
},
int {
from 59336119,
to 59336230,
strand plus,
id gi 224589823
},
int {
from 59336347,
to 59336525,
strand plus,
id gi 224589823
},
int {
from 59337090,
to 59337235,
strand plus,
id gi 224589823
},
int {
from 59337948,
to 59338149,
strand plus,
id gi 224589823
},
int {
from 59338753,
to 59338858,
strand plus,
id gi 224589823
},
int {
from 59340193,
to 59340277,
strand plus,
id gi 224589823
t/data/entrezgene_bug3453.dat view on Meta::CPAN
strand plus,
id gi 224589822
},
int {
from 155232570,
to 155232683,
strand plus,
id gi 224589822
},
int {
from 155233113,
to 155233224,
strand plus,
id gi 224589822
},
int {
from 155233341,
to 155233519,
strand plus,
id gi 224589822
},
int {
from 155234084,
to 155234229,
strand plus,
id gi 224589822
},
int {
from 155234942,
to 155235143,
strand plus,
id gi 224589822
},
int {
from 155235747,
to 155235852,
strand plus,
id gi 224589822
},
int {
from 155237187,
to 155237271,
strand plus,
id gi 224589822
},
int {
from 155239480,
to 155240481,
strand plus,
id gi 224589822
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
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source {
{
src {
db "CCDS",
tag str "CCDS14771.4"
},
anchor "CCDS14771.4"
}
},
genomic-coords {
mix {
int {
from 155227424,
to 155227451,
strand plus,
id gi 224589822
},
int {
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to 155232683,
strand plus,
id gi 224589822
},
int {
from 155233113,
to 155233224,
strand plus,
id gi 224589822
},
int {
from 155233341,
to 155233519,
strand plus,
id gi 224589822
},
int {
from 155234084,
to 155234229,
strand plus,
id gi 224589822
},
int {
from 155234942,
to 155235143,
strand plus,
id gi 224589822
},
int {
from 155235747,
to 155235852,
strand plus,
id gi 224589822
},
int {
from 155237187,
to 155237271,
strand plus,
id gi 224589822
t/data/entrezgene_bug3453.dat view on Meta::CPAN
strand plus,
id gi 261823945
},
int {
from 10325,
to 10438,
strand plus,
id gi 261823945
},
int {
from 10868,
to 10979,
strand plus,
id gi 261823945
},
int {
from 11096,
to 11274,
strand plus,
id gi 261823945
},
int {
from 11839,
to 11984,
strand plus,
id gi 261823945
},
int {
from 12697,
to 12898,
strand plus,
id gi 261823945
},
int {
from 13502,
to 13607,
strand plus,
id gi 261823945
},
int {
from 14942,
to 15026,
strand plus,
id gi 261823945
},
int {
from 17235,
to 18236,
strand plus,
id gi 261823945
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
version 2,
source {
{
src {
db "CCDS",
tag str "CCDS14771.4"
},
anchor "CCDS14771.4"
}
},
genomic-coords {
mix {
int {
from 5179,
to 5206,
strand plus,
id gi 261823945
},
int {
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to 10438,
strand plus,
id gi 261823945
},
int {
from 10868,
to 10979,
strand plus,
id gi 261823945
},
int {
from 11096,
to 11274,
strand plus,
id gi 261823945
},
int {
from 11839,
to 11984,
strand plus,
id gi 261823945
},
int {
from 12697,
to 12898,
strand plus,
id gi 261823945
},
int {
from 13502,
to 13607,
strand plus,
id gi 261823945
},
int {
from 14942,
to 15026,
strand plus,
id gi 261823945
t/data/entrezgene_bug3453.dat view on Meta::CPAN
strand plus,
id gi 528476524
},
int {
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to 155144303,
strand plus,
id gi 528476524
},
int {
from 155144733,
to 155144844,
strand plus,
id gi 528476524
},
int {
from 155144961,
to 155145139,
strand plus,
id gi 528476524
},
int {
from 155145704,
to 155145849,
strand plus,
id gi 528476524
},
int {
from 155146562,
to 155146763,
strand plus,
id gi 528476524
},
int {
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to 155147472,
strand plus,
id gi 528476524
},
int {
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to 155148892,
strand plus,
id gi 528476524
},
int {
from 155151087,
to 155152088,
strand plus,
id gi 528476524
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
version 2,
genomic-coords {
mix {
int {
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to 155139068,
strand plus,
id gi 528476524
},
int {
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to 155144303,
strand plus,
id gi 528476524
},
int {
from 155144733,
to 155144844,
strand plus,
id gi 528476524
},
int {
from 155144961,
to 155145139,
strand plus,
id gi 528476524
},
int {
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to 155145849,
strand plus,
id gi 528476524
},
int {
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to 155146763,
strand plus,
id gi 528476524
},
int {
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to 155147472,
strand plus,
id gi 528476524
},
int {
from 155148808,
to 155148892,
strand plus,
id gi 528476524
},
int {
from 155151087,
to 155151680,
strand plus,
id gi 528476524
}
}
},
t/data/entrezgene_bug3453.dat view on Meta::CPAN
strand plus,
id gi 157734237
},
int {
from 143715504,
to 143715617,
strand plus,
id gi 157734237
},
int {
from 143716047,
to 143716158,
strand plus,
id gi 157734237
},
int {
from 143716275,
to 143716453,
strand plus,
id gi 157734237
},
int {
from 143717018,
to 143717163,
strand plus,
id gi 157734237
},
int {
from 143717876,
to 143718077,
strand plus,
id gi 157734237
},
int {
from 143718681,
to 143718786,
strand plus,
id gi 157734237
},
int {
from 143720118,
to 143720202,
strand plus,
id gi 157734237
},
int {
from 143722405,
to 143723406,
strand plus,
id gi 157734237
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
version 2,
genomic-coords {
mix {
int {
from 143710354,
to 143710381,
strand plus,
id gi 157734237
},
int {
from 143715504,
to 143715617,
strand plus,
id gi 157734237
},
int {
from 143716047,
to 143716158,
strand plus,
id gi 157734237
},
int {
from 143716275,
to 143716453,
strand plus,
id gi 157734237
},
int {
from 143717018,
to 143717163,
strand plus,
id gi 157734237
},
int {
from 143717876,
to 143718077,
strand plus,
id gi 157734237
},
int {
from 143718681,
to 143718786,
strand plus,
id gi 157734237
},
int {
from 143720118,
to 143720202,
strand plus,
id gi 157734237
},
int {
from 143722405,
to 143722998,
strand plus,
id gi 157734237
}
}
},
t/data/entrezgene_bug3453.dat view on Meta::CPAN
pmid 15621723,
pmid 15591265,
pmid 12477932,
pmid 11868823,
pmid 11588013,
pmid 11418623,
pmid 11160343,
pmid 11039580,
pmid 10657622,
pmid 10655549,
pmid 10642536,
pmid 10486269,
pmid 10329852,
pmid 9535918,
pmid 9002663,
pmid 8756628,
pmid 8666384,
pmid 8193355,
pmid 7718508,
pmid 1376929
}
},
{
type comment,
heading "NCBI Reference Sequences (RefSeq)",
comment {
{
type comment,
heading "RefSeqs maintained independently of Annotated Genomes",
products {
{
type mRNA,
heading "mRNA Sequence",
accession "NM_002186",
version 2,
source {
{
src {
db "Nucleotide",
tag id 29171681
},
anchor "NM_002186"
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Product",
accession "NP_002177",
version 2,
source {
{
src {
db "Protein",
tag id 29171682
},
anchor "NP_002177",
post-text "interleukin-9 receptor isoform 1 precursor"
}
},
seqs {
whole gi 29171682
},
comment {
{
type other,
heading "Related",
source {
{
src {
db "Ensembl",
tag str "ENSP00000244174"
}
}
}
},
{
type other,
heading "UniProtKB",
source {
},
comment {
{
type other,
source {
{
src {
db "UniProtKB/Swiss-Prot",
tag str "Q01113"
},
anchor "Q01113"
}
}
}
}
},
{
type other,
heading "Consensus CDS (CCDS)",
source {
{
src {
db "CCDS",
tag str "CCDS14771.4"
},
anchor "CCDS14771.4"
}
}
},
{
type other,
heading "Related",
source {
{
src {
db "Vega",
tag str "OTTHUMP00000024332"
}
t/data/entrezgene_bug3453.dat view on Meta::CPAN
src-int 56111,
src-str2 "56111"
},
locus {
{
type genomic,
heading "Reference GRCh37.p13 Primary Assembly",
label "chromosome 5 reference GRCh37.p13 Primary Assembly",
accession "NC_000005",
version 9,
seqs {
int {
from 140734767,
to 140892545,
strand plus,
id gi 224589817
}
},
products {
{
type mRNA,
heading "Reference",
label "transcript variant 1",
accession "NM_018917",
version 2,
genomic-coords {
mix {
int {
from 140734767,
to 140737187,
strand plus,
id gi 224589817
},
int {
from 140874373,
to 140874431,
strand plus,
id gi 224589817
},
int {
from 140884959,
to 140885047,
strand plus,
id gi 224589817
},
int {
from 140890513,
to 140892545,
strand plus,
id gi 224589817
}
}
},
seqs {
whole gi 14196466
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_061740",
version 1,
source {
{
src {
db "CCDS",
tag str "CCDS58979.1"
},
anchor "CCDS58979.1"
}
},
genomic-coords {
mix {
int {
from 140734767,
to 140737187,
strand plus,
id gi 224589817
},
int {
from 140874373,
to 140874431,
strand plus,
id gi 224589817
},
int {
from 140884959,
to 140885047,
strand plus,
id gi 224589817
},
int {
from 140890513,
to 140890739,
strand plus,
id gi 224589817
}
}
},
seqs {
whole gi 11056026
}
}
}
},
{
type mRNA,
heading "Reference",
label "transcript variant 2",
accession "NM_032053",
version 1,
genomic-coords {
int {
from 140734767,
to 140737295,
strand plus,
id gi 224589817
}
},
seqs {
t/data/entrezgene_bug3453.dat view on Meta::CPAN
products {
{
type mRNA,
heading "Reference",
label "transcript variant 1",
accession "NM_018917",
version 3,
genomic-coords {
mix {
int {
from 65221,
to 67817,
strand plus,
id gi 50284693
},
int {
from 205003,
to 205061,
strand plus,
id gi 50284693
},
int {
from 215589,
to 215677,
strand plus,
id gi 50284693
},
int {
from 221143,
to 223175,
strand plus,
id gi 50284693
}
}
},
seqs {
whole gi 523567547
}
},
{
type mRNA,
heading "Reference",
label "transcript variant 2",
accession "NM_032053",
version 2,
genomic-coords {
int {
from 65221,
to 67926,
strand plus,
id gi 50284693
}
},
seqs {
whole gi 523567549
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_061740",
version 2,
source {
{
src {
db "CCDS",
tag str "CCDS58979.1"
},
anchor "CCDS58979.1"
}
},
genomic-coords {
mix {
int {
from 65304,
to 67817,
strand plus,
id gi 50284693
},
int {
from 205003,
to 205061,
strand plus,
id gi 50284693
},
int {
from 215589,
to 215677,
strand plus,
id gi 50284693
},
int {
from 221143,
to 221369,
strand plus,
id gi 50284693
}
}
},
seqs {
whole gi 523567548
}
},
{
type peptide,
heading "Reference",
label "isoform 2 precursor",
accession "NP_114442",
version 2,
genomic-coords {
int {
from 65304,
to 67859,
strand plus,
id gi 50284693
}
},
seqs {
whole gi 523567550
}
}
}
}
}
},
{
type genomic,
heading "Alternate CHM1_1.1",
label "chromosome 5 alternate CHM1_1.1",
accession "NC_018916",
version 2,
seqs {
int {
from 140167974,
to 140325822,
strand plus,
id gi 528476642
}
},
products {
{
type mRNA,
heading "Reference",
label "transcript variant 1",
accession "NM_018917",
version 2,
genomic-coords {
mix {
int {
from 140167974,
to 140170394,
strand plus,
id gi 528476642
},
int {
from 140307638,
to 140307696,
strand plus,
id gi 528476642
},
int {
from 140318237,
to 140318325,
strand plus,
id gi 528476642
},
int {
from 140323790,
to 140325822,
strand plus,
id gi 528476642
}
}
},
seqs {
whole gi 14196466
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_061740",
version 1,
genomic-coords {
mix {
int {
from 140167974,
to 140170394,
strand plus,
id gi 528476642
},
int {
from 140307638,
to 140307696,
strand plus,
id gi 528476642
},
int {
from 140318237,
to 140318325,
strand plus,
id gi 528476642
},
int {
from 140323790,
to 140324016,
strand plus,
id gi 528476642
}
}
},
seqs {
whole gi 11056026
}
}
}
},
{
type mRNA,
heading "Reference",
label "transcript variant 2",
accession "NM_032053",
version 1,
genomic-coords {
int {
from 140167974,
to 140170502,
strand plus,
id gi 528476642
}
},
seqs {
whole gi 14196467
},
products {
{
type peptide,
heading "Reference",
label "isoform 2",
accession "NP_114442",
version 1,
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
}
},
{
type genomic,
heading "Alternate HuRef",
label "chromosome 5 alternate HuRef",
accession "AC_000137",
version 1,
seqs {
int {
from 135879842,
to 136037385,
strand plus,
id gi 157734151
}
},
products {
{
type mRNA,
heading "Reference",
label "transcript variant 1",
accession "NM_018917",
version 2,
genomic-coords {
mix {
int {
from 135879842,
to 135882262,
strand plus,
id gi 157734151
},
int {
from 136019211,
to 136019269,
strand plus,
id gi 157734151
},
int {
from 136029799,
to 136029887,
strand plus,
id gi 157734151
},
int {
from 136035353,
to 136037385,
strand plus,
id gi 157734151
}
}
},
seqs {
whole gi 14196466
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_061740",
version 1,
genomic-coords {
mix {
int {
from 135879842,
to 135882262,
strand plus,
id gi 157734151
},
int {
from 136019211,
to 136019269,
strand plus,
id gi 157734151
},
int {
from 136029799,
to 136029887,
strand plus,
id gi 157734151
},
int {
from 136035353,
to 136035579,
strand plus,
id gi 157734151
}
}
},
seqs {
whole gi 11056026
}
}
}
},
{
type mRNA,
heading "Reference",
label "transcript variant 2",
accession "NM_032053",
version 1,
genomic-coords {
int {
from 135879842,
to 135882370,
strand plus,
id gi 157734151
}
},
seqs {
whole gi 14196467
},
products {
{
type peptide,
heading "Reference",
label "isoform 2",
accession "NP_114442",
version 1,
t/data/entrezgene_bug3453.dat view on Meta::CPAN
&fill=10"
}
}
}
},
comments {
{
type comment,
heading "RefSeq Status",
label "REVIEWED"
},
{
type comment,
refs {
pmid 16344560,
pmid 11230163,
pmid 10835267,
pmid 10817752,
pmid 10716726,
pmid 10380929
}
},
{
type comment,
heading "NCBI Reference Sequences (RefSeq)",
comment {
{
type comment,
heading "RefSeqs maintained independently of Annotated Genomes",
products {
{
type mRNA,
heading "mRNA Sequence",
accession "NM_018917",
version 3,
source {
{
src {
db "Nucleotide",
tag id 523567547
},
anchor "NM_018917"
}
},
seqs {
whole gi 523567547
},
products {
{
type peptide,
heading "Product",
accession "NP_061740",
version 2,
source {
{
src {
db "Protein",
tag id 523567548
},
anchor "NP_061740",
post-text "protocadherin gamma-A4 isoform 1 precursor"
}
},
seqs {
whole gi 523567548
},
comment {
{
type other,
heading "Conserved Domains",
source {
{
pre-text "(6)",
anchor "summary"
}
},
comment {
{
type other,
source {
{
src {
db "CDD",
tag id 206637
},
anchor "cd11304: Cadherin_repeat; Cadherin
tandem repeat domain"
}
},
comment {
{
type other,
text "Location: 277 - 374 Blast Score: 278"
},
{
type other,
text "Location: 393 - 479 Blast Score: 236"
},
{
type other,
text "Location: 170 - 269 Blast Score: 227"
},
{
type other,
text "Location: 610 - 697 Blast Score: 223"
},
{
type other,
text "Location: 487 - 589 Blast Score: 221"
},
{
type other,
text "Location: 64 - 160 Blast Score: 123"
}
}
}
}
},
{
type other,
heading "Related",
t/data/entrezgene_bug3453.dat view on Meta::CPAN
anchor "AF152324,DA392480"
}
}
},
{
type other,
heading "Related",
source {
{
src {
db "Ensembl",
tag str "ENST00000571252"
}
}
}
},
{
type other,
heading "Related",
source {
{
src {
db "Vega",
tag str "OTTHUMT00000437959"
}
}
}
}
}
},
{
type mRNA,
heading "mRNA Sequence",
accession "NM_032053",
version 2,
source {
{
src {
db "Nucleotide",
tag id 523567549
},
anchor "NM_032053"
}
},
seqs {
whole gi 523567549
},
products {
{
type peptide,
heading "Product",
accession "NP_114442",
version 2,
source {
{
src {
db "Protein",
tag id 523567550
},
anchor "NP_114442",
post-text "protocadherin gamma-A4 isoform 2 precursor"
}
},
seqs {
whole gi 523567550
},
comment {
{
type other,
heading "Conserved Domains",
source {
{
pre-text "(6)",
anchor "summary"
}
},
comment {
{
type other,
source {
{
src {
db "CDD",
tag id 206637
},
anchor "cd11304: Cadherin_repeat; Cadherin
tandem repeat domain"
}
},
comment {
{
type other,
text "Location: 277 - 374 Blast Score: 275"
},
{
type other,
text "Location: 393 - 479 Blast Score: 233"
},
{
type other,
text "Location: 170 - 269 Blast Score: 224"
},
{
type other,
text "Location: 610 - 697 Blast Score: 220"
},
{
type other,
text "Location: 487 - 589 Blast Score: 218"
},
{
type other,
text "Location: 64 - 160 Blast Score: 121"
}
}
}
}
},
{
type other,
heading "UniProtKB",
( run in 2.071 seconds using v1.01-cache-2.11-cpan-39bf76dae61 )