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t/data/echofilter.wublastn  view on Meta::CPAN

Sbjct:  1441 CTTACTGTCTTTTTTCTAAAGTAAAAACAAAGAAATTATGTGCCAGATTTATGCATATTA 1500

Query:  1501 TTTTATGTTGCATAGAATAAAATTTTTAATCTTTAATTTTACATTTCCTAAATATATTTT 1560
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1501 TTTTATGTTGCATAGAATAAAATTTTTAATCTTTAATTTTACATTTCCTAAATATATTTT 1560

Query:  1561 AAGACGAAACATTTGTTCTATAGCTTTTCCCTTTTTTTAAGTAAGGAATTTTATTTTTTT 1620
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1561 AAGACGAAACATTTGTTCTATAGCTTTTCCCTTTTTTTAAGTAAGGAATTTTATTTTTTT 1620

Query:  1621 CTGAATTATTTTCTCTCGTGAGTATATTGATCCAGAAAGAAAACTTGTATTATGTGTGTT 1680
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1621 CTGAATTATTTTCTCTCGTGAGTATATTGATCCAGAAAGAAAACTTGTATTATGTGTGTT 1680

Query:  1681 TTAAAATGAGAAATCTAAAAAACGAAAAGTCTCCAAAGTCTCTGGAATTTGAAACACTTT 1740
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1681 TTAAAATGAGAAATCTAAAAAACGAAAAGTCTCCAAAGTCTCTGGAATTTGAAACACTTT 1740

Query:  1741 GCATAACGTATAAAAGCCTGTTTAAGAGACAGCCAACTATGGCCTGTGGATCAAATCCAG 1800
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1741 GCATAACGTATAAAAGCCTGTTTAAGAGACAGCCAACTATGGCCTGTGGATCAAATCCAG 1800

Query:  1801 CCTGCTGCCTGCTTTTTATGGCCTGTGAGCTAGGAATTGTGTTTATAATTTTAAATGTTT 1860
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1801 CCTGCTGCCTGCTTTTTATGGCCTGTGAGCTAGGAATTGTGTTTATAATTTTAAATGTTT 1860

Query:  1861 TTTTTTAAAGACTTTTATGATACTTGAAAATTAACATGAATATTTAGTGTTCATAAATAA 1920
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1861 TTTTTTAAAGACTTTTATGATACTTGAAAATTAACATGAATATTTAGTGTTCATAAATAA 1920

Query:  1921 AGTTTGTTGAAACACA 1936
             ||||||||||||||||
Sbjct:  1921 AGTTTGTTGAAACACA 1936


Parameters:
  echofilter

  ctxfactor=2.00
  E=10

  Query                        -----  As Used  -----    -----  Computed  ----
  Strand MatID Matrix name     Lambda    K       H      Lambda    K       H
   +1      0   +5,-4           0.192   0.182   0.357    same    same    same
               Q=10,R=10       0.104   0.0151  0.0600    n/a     n/a     n/a
   -1      0   +5,-4           0.192   0.182   0.357    same    same    same
               Q=10,R=10       0.104   0.0151  0.0600    n/a     n/a     n/a

  Query
  Strand MatID  Length  Eff.Length     E    S  W   T   X   E2     S2
   +1      0     1936      1936       9.2  89 11 n/a  73  0.042   83
                                                     134  2.1     89
   -1      0     1936      1936       9.2  89 11 n/a  73  0.042   83
                                                     134  2.1     89


Statistics:

  Database:  NM_003201.fa
   Title:  NM_003201.fa
   Posted:  7:39:50 PM CET Nov 2, 2007
   Created:  7:39:50 PM CET Nov 2, 2007
   Format:  XDF-1
   # of letters in database:  1936
   # of sequences in database:  1
   # of database sequences satisfying E:  1
  No. of states in DFA:  257 (257 KB)
  Total size of DFA:  344 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  1
  Search cpu time:  0.00u 0.01s 0.01t   Elapsed:  00:00:00
  Total cpu time:  0.00u 0.01s 0.01t   Elapsed:  00:00:00
  Start:  Fri Nov  2 19:42:26 2007   End:  Fri Nov  2 19:42:26 2007