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t/data/dcr1_sp.WUBLASTP view on Meta::CPAN
Links = 1-4-5-7-3-(2)
Query: 1497 LLTQ-QH-ISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQK--DQKSDVPSPL 1552
+L+Q +H + +K+IAD EALIG LL+ GP MG+K + D S S
Sbjct: 1170 MLSQAKHALGEKTIADVCEALIGACLLSGGPEHRFD----MGVKAVSVFVDSPSHAVSRW 1225
Query: 1553 LRFIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINN---RV 1609
+I PN + Q+EEK+GY F+ L A TH S + RV
Sbjct: 1226 KEYIGLYKPPNYQVRKAEGAETNLAL-QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRV 1284
Query: 1610 TGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKH 1669
CYQRLEFLGD++LD + LF P LT+ + A+V+N +LAVK F KH
Sbjct: 1285 P-CYQRLEFLGDSLLDMVCVEDLFHRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKH 1343
Query: 1670 FIAMCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFE 1729
A L I +V+ ++ A Y V ++ PK + D+ E
Sbjct: 1344 IKAFSNPLQAQITYYVEEIETAEAESE-GAVDYWVVAKDP-----------PKCLPDMVE 1391
Query: 1730 SVAGAIYLDSGRNLDTTWQVI 1750
+ GAI++DS D +++VI
Sbjct: 1392 AYLGAIFVDS----DFSFEVI 1408
Score = 93 (37.8 bits), Expect = 1.2e-60, Sum P(6) = 1.2e-60
Identities = 26/74 (35%), Positives = 34/74 (45%)
Links = 1-4-5-7-(3)-2
Query: 1344 GMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQL 1403
G + ER E +GD FLK AT+ L+ D E R + N NL+ KK I +
Sbjct: 1083 GKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKRQIYRY 1142
Query: 1404 IVANKFDAHDSWLP 1417
I + F H W P
Sbjct: 1143 IRSRSFSRH-VWYP 1155
Score = 66 (28.3 bits), Expect = 1.2e-60, Sum P(6) = 1.2e-60
Identities = 31/113 (27%), Positives = 48/113 (42%)
Links = 1-(4)-5-7-3-2
Query: 483 DMRSYVQ-SKGR----ARRAGSRYVITVEEKDTAAYCSKLPSDIFTRLVPHNQIIPIEEN 537
D+ S +Q +GR + G+R A Y S L + T P + ++
Sbjct: 620 DLDSLLQHEEGRRTFTVKSTGARLTYHSAIAILARYASSLQYEKET--TPQATYV-VQSV 676
Query: 538 GVTKYCAELLLPINSPIKHAIVLKNPMPNKKTAQMAVALEACRQLHLEGELDD 590
G T C E++LP SPI+ + +P K A+ + A + C L LDD
Sbjct: 677 GNTYVC-EVILPEKSPIRG--LTGSPAIRKSIAKQSAAFDTCLLLRRHKLLDD 726
Score = 50 (22.7 bits), Expect = 1.2e-60, Sum P(6) = 1.2e-60
Identities = 12/55 (21%), Positives = 31/55 (56%)
Links = 1-4-(5)-7-3-2
Query: 687 LSAKEIPKIPPFPVFLRQGNMKVRLIVAPKKT--TVTAAQLQEIQLFHNYLFTQV 739
L+ +++P P FP++L + +++ +++ T ++A +L+ + F +F V
Sbjct: 797 LTREKLPDFPAFPIYLDE-DIETKVVPRSLDTGMELSAEELRALTTFTLRIFRDV 850
Score = 45 (20.9 bits), Expect = 4.1e-54, Sum P(3) = 4.1e-54
Identities = 39/168 (23%), Positives = 66/168 (39%)
Links = 1-(6)-2
Query: 1232 QENQEDENTPTNFPKTIDEEIEELSIGARKKQEID-----DNAAKTDVLERENCEVL--- 1283
+E +E E T NF +T+ E+ + G ++D + +T ++ +
Sbjct: 592 REVREAEKTMQNFCETLPED--RILHG--NDHDLDSLLQHEEGRRTFTVKSTGARLTYHS 647
Query: 1284 PVAINEK-SRSFSFEKESKAINGRLIRQRSEEYVSHI----DSDI-GLGVSPCLLLTALT 1337
+AI + + S +EKE+ +++ YV + S I GL SP + +
Sbjct: 648 AIAILARYASSLQYEKETTPQATYVVQSVGNTYVCEVILPEKSPIRGLTGSPAIRKSIAK 707
Query: 1338 TSNAADGMSLERFETIGDSFLKFATTDYLYHTLLD-QHEGKLSFARSK 1384
S A D L R + D F K +YH L KL+ K
Sbjct: 708 QSAAFDTCLLLRRHKLLDDFFKS-----IYHKRLPAMRNAKLAITSKK 750
Score = 44 (20.5 bits), Expect = 1.2e-60, Sum P(6) = 1.2e-60
Identities = 17/61 (27%), Positives = 30/61 (49%)
Links = 1-4-5-(7)-3-2
Query: 932 ELMDIHPISATLWNVIAALPSIFYRVNQLLLT----DELRETILVKAFGKEK-TKLDDNV 986
E + I I ++ + A P+I R++ L++ DEL + ++ + E TK DN
Sbjct: 1010 EPLKISAIPPSIASTCLAFPAIITRLDSYLISIEACDEL-DLVIRSDYALEAVTKDSDNT 1068
Query: 987 E 987
E
Sbjct: 1069 E 1069
Score = 39 (18.8 bits), Expect = 6.9e-58, Sum P(4) = 6.9e-58
Identities = 19/76 (25%), Positives = 31/76 (40%)
Links = 1-(8)-3-2
Query: 933 LMDIHPISATLWNVIAALPS--IFYR----VNQLLLTDELRETILVKAFGKEKTKLDDNV 986
L ++ T+ N LP I + ++ LL +E R T VK+ G T
Sbjct: 591 LREVREAEKTMQNFCETLPEDRILHGNDHDLDSLLQHEEGRRTFTVKSTGARLTYHSAIA 650
Query: 987 EWNSLAYATEYEEKQT 1002
A + +YE++ T
Sbjct: 651 ILARYASSLQYEKETT 666
>sp|A1DE13.1|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent
helicase dcl1
Length = 1538
Score = 457 (165.9 bits), Expect = 1.6e-60, Sum P(6) = 1.6e-60
Identities = 157/517 (30%), Positives = 237/517 (45%)
Links = (1)-4-6-5-3-2
Query: 12 NPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQ--GGKR---AF 66
+PR+YQ+EL ++A +NTI L TGSGKT IAVLLL+ + LD GK +F
Sbjct: 126 DPREYQIELFERAKTQNTIAVLDTGSGKTLIAVLLLRH---TILNELDNRANGKPHRVSF 182
Query: 67 FVVEKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLL 126
F+V+ V L QQA + + V G + LWD K D+ ++R+ V+V TA+ L
Sbjct: 183 FLVDSVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWD-KRTWDEHLQRNMVIVCTAEILN 241
Query: 127 DLIRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPVPRVLGLTASLIKA 186
+ ++Y+K++ + +LIFDE HHA HPY I+ D + PRV G+TAS I
Sbjct: 242 QCLLNSYVKMDQINLLIFDEAHHAK-KDHPYARIIRDSYFKAQPSQRPRVFGMTASPIDT 300
Query: 187 KVAPEKLMEQLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLGIPNFDT 246
K + E +LE+ +DS I T S + L + ++P E V + L P
Sbjct: 301 K---GDITEAATRLETLLDSRIATTSKITLLREVVSRPIEKV-----WAYNRLESPFATE 352
Query: 247 VIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQVWEKEL 306
+ ++ D + ++ + +LG W + R W L
Sbjct: 353 LYKLMDTRYGNIKV---------------LEGVYRFAWHASSELGKWCSDRA---WWHAL 394
Query: 307 GKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIRLFEILE 366
VLP + +++ + + K I I V E+
Sbjct: 395 A----DDVLPKLEGNISKLVESNTLNAEH--GAVFKDIIRIREASETVKNYSFADPELPG 448
Query: 367 TFNPEFQKERMKLEKAEHLS------AIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPD 420
+P+ Q RM+L K H S I+F +RY A L + + P + P
Sbjct: 449 ELSPKVQLLRMELSK--HFSDTTGTKCIVFTQKRYTAKILNELFTVLNI--PHLR---PG 501
Query: 421 YVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDR 480
++G ++ + ++Q L +F EINCL ATSV EEG+D+ CNLV++FD
Sbjct: 502 VLIGVRPGDIGGMNVT--FRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDL 559
Query: 481 PLDMRSYVQSKGRARRAGSRYVITVEEKDTAAYCSKL 517
+ YVQS+GRAR S Y I VE KD A + +L
Sbjct: 560 YRTLIQYVQSRGRARHCTSTYAIMVE-KDNAEHEGRL 595
Score = 210 (79.0 bits), Expect = 1.6e-60, Sum P(6) = 1.6e-60
Identities = 74/248 (29%), Positives = 111/248 (44%)
Links = 1-4-6-5-3-(2)
Query: 1497 LLTQ-QH-ISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLR 1554
LL++ +H + +K+IAD EALIG LL+ GP + ++ D S S
Sbjct: 1174 LLSEGKHALGEKTIADVCEALIGASLLSGGPENRFDMATKAVTALV--DSPSHRVSCWKE 1231
Query: 1555 FIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINN---RVTG 1611
t/data/dcr1_sp.WUBLASTP view on Meta::CPAN
Score = 40 (19.1 bits), Expect = 4.8e-59, Sum P(6) = 4.8e-59
Identities = 10/32 (31%), Positives = 16/32 (50%)
Links = 1-4-5-(7)-3-2
Query: 865 DQNQSLLDVDFTSTRLNLLQPRIQNQPRRSRT 896
D NQ +L + R NLL ++ Q + +T
Sbjct: 976 DWNQPVLQAELVRLRRNLLD-KMTTQEKEMQT 1006
Score = 39 (18.8 bits), Expect = 1.7e-56, Sum P(4) = 1.7e-56
Identities = 14/43 (32%), Positives = 19/43 (44%)
Links = 1-(8)-3-2
Query: 543 CAE-LLLPINSPIKHAIVLKNPMPNKKTAQMAVALEACRQLHL 584
CAE L + P + L P + +ALEAC +L L
Sbjct: 1011 CAEPLRISALPPSIVSTCLAFPAIISRLDSYLIALEACDELEL 1053
>sp|Q2U6C4.2|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent
helicase dcl1
Length = 1523
Score = 474 (171.9 bits), Expect = 8.5e-58, Sum P(4) = 8.5e-58
Identities = 196/684 (28%), Positives = 307/684 (44%)
Links = (1)-4-3-2
Query: 12 NPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQG-GKR---AFF 67
+PR+YQVEL ++A +NTI L TGSGKT IAVLLLK +Q +D+ GK +FF
Sbjct: 115 DPREYQVELFERAKSQNTIAVLDTGSGKTLIAVLLLKHI-IQNEL-IDRANGKPPRISFF 172
Query: 68 VVEKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLD 127
+V+ V L QQA + + V Q G + LW SK+ D + + V+V TA+ L
Sbjct: 173 LVDSVTLAFQQAAVLRNNLDQNVAQFFGAMGTDLW-SKQTWDHQFENNMVIVCTAEILNQ 231
Query: 128 LIRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPV-PRVLGLTASLIKA 186
+ ++Y++++ + +LIFDE HH HPY I+ + LK D PR+ G+TAS I
Sbjct: 232 CLLNSYIRMDQINLLIFDEAHHTK-KDHPYARIIRE-SYLKADPTKRPRIFGMTASPIDT 289
Query: 187 KVAPEKLMEQLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLGIPNFDT 246
K ++E KLE +DS I T S L + +P E + +E L P F T
Sbjct: 290 K---GDIIESATKLEVLLDSKIATTSKPNLLREVVRRPIE-----ESWEYDKLD-PPFAT 340
Query: 247 VIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQVWEKEL 306
+++ A F D+ +P+ + T +LGP A R W L
Sbjct: 341 --KLYQILQA------RFG---DISSLQPV---FRFTLQASSELGPCCADRA---WAYAL 383
Query: 307 GKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIRLFEILE 366
VLP L N+ K + + + +K+I I+ V +
Sbjct: 384 A----DDVLPK--LEG-NVRKLAQSISSPIPQCALKEISRIQEASDIVKNHSFNSPNVPG 436
Query: 367 TFNPEFQKERMKLEKA-EH---LSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPDYV 422
+P+ Q R KL K EH I+F +RY A L + ++ ++ P +
Sbjct: 437 ELSPKVQLLRQKLIKYFEHPTKTKCIVFTQKRYTAKMLFDLFSTLE-----IPYLRPGVL 491
Query: 423 VGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPL 482
+G ++ + ++Q L +F EINCL ATSV EEG+D+ CNLV++FD
Sbjct: 492 IGVRSGDIVGMNVS--FRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRFDLYN 549
Query: 483 DMRSYVQSKGRARRAGSRYVITVEE--KDTAAY------CSKLPSDIFTRLVPHNQIIPI 534
+ YVQS+GRAR + S Y +E D AA KL F +P ++I+
Sbjct: 550 TLIQYVQSRGRARHSSSTYASMIERYNADHAARLVEVREAEKLMQS-FCETLPEDRIL-- 606
Query: 535 EENGVTKYCAELLLPINSPIKHAIVLKNPMPNKKTAQMAVALEA--CRQLHLEGELDDN- 591
+G+ +L K +++ K T A+A+ A L E E
Sbjct: 607 --HGIDSEIDSILQ--GEEEKRTFIIR-ATGAKLTYHSALAILARYASSLQYEKETSAQA 661
Query: 592 ---LLPKGRESIAKLLEHIDEEPDEYAPGI-AAKVGSSKRKQLYDKKIARALNESFVEAD 647
+LP+ + +++ ++ P G+ A+K ++K+ +D + L + + D
Sbjct: 662 TYVVLPQNNSFVCEVILP-EKSPVRGLTGVPASKKSAAKQSAAFDTCVL--LRKHKLLDD 718
Query: 648 KECFIYAFELERFREAELTLNPKR 671
+Y L R A L + R
Sbjct: 719 HFNSVYHRRLPAMRNARLAITSSR 742
Score = 204 (76.9 bits), Expect = 8.5e-58, Sum P(4) = 8.5e-58
Identities = 95/348 (27%), Positives = 153/348 (43%)
Links = 1-4-3-(2)
Query: 1503 ISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPS-PLLRFIDTPTN 1561
+ +K++AD EALIG LL+ G + M +K + D P+ L + D ++
Sbjct: 1169 LREKTVADVCEALIGASLLSGGLHNQFD----MAVKAVTA--VVDSPNHKALCWADYTSS 1222
Query: 1562 ---PNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRV-TGCYQRLE 1617
P + ++ ++EEK+GYRFK L AFTH SY + CYQRLE
Sbjct: 1223 YMLPKYQTQSPDG-YELDLGRKVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLE 1281
Query: 1618 FLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGL 1677
FLGD++LD + LF P LT+ + A+V+N +LAVK H L
Sbjct: 1282 FLGDSLLDMVCVDDLFYRYPDKDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPL 1341
Query: 1678 YHMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYL 1737
I + + ++ + ++VT + PK + D+ E+ GA ++
Sbjct: 1342 QSQITHYAEEIQAAENESQGAVDYWLVTKDP------------PKCLPDMVEAYLGAAFV 1389
Query: 1738 DSG---RNLDTTWQ----VIFHMMRGTIELCCANP-PRSPIRELMEFEQSKVRFS-KMER 1788
DS R ++ +Q FH M TI AN P + ++ + E + K
Sbjct: 1390 DSDFQFRVVEDFFQRHVKSYFHDM--TIYDTFANKHPTTFLQNRLTNEYGCTNYCLKAGE 1447
Query: 1789 I--LESGKVRVTVEVVNN--MRFTGMGRNYRIAKATAAKRALKYLHQI 1832
I ++ G V V V+ + + G + R AK A+++AL L +
Sbjct: 1448 IPVVDGGTVSVLAAVIVHEVVIAEGTASSGRYAKVKASEKALSVLENM 1495
Score = 84 (34.6 bits), Expect = 8.5e-58, Sum P(4) = 8.5e-58
Identities = 24/74 (32%), Positives = 33/74 (44%)
Links = 1-4-(3)-2
Query: 1344 GMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQL 1403
G + ER E +GD FLK AT+ L+ D E R + N NL+ K + Q
Sbjct: 1074 GKNYERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTALKKELYQY 1133
Query: 1404 IVANKFDAHDSWLP 1417
+ F H +W P
Sbjct: 1134 TRSRGFSRH-TWYP 1146
Score = 39 (18.8 bits), Expect = 8.5e-58, Sum P(4) = 8.5e-58
Identities = 10/50 (20%), Positives = 22/50 (44%)
Links = 1-(4)-3-2
Query: 687 LSAKEIPKIPPFPVFLRQGNMKVRLIVAPKKTTVTAAQLQEIQLFHNYLF 736
L+ + +P P F +FL +++ ++V QE++ + F
Sbjct: 789 LTRERLPDFPSFTIFL-DDDIET-IVVTESVEEALHISSQELEYLSTFTF 836
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