CBC results from the CPAN

BioPerl

BLASTP 2.0MP-WashU [04-May-2006] [linux26-x64-I32LPF64 2006-05-10T17:22:28]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  Celegans_dcr1
        (1845 letters)

Database:  swissprot
           353,658 sequences; 132,868,552 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

sp|P34529.2|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1   9560  0.        1
sp|Q9VCU9.1|DCR1_DROME RecName: Full=Endoribonuclease Dcr...  1792  1.5e-232  3
sp|Q9UPY3.2|DICER_HUMAN RecName: Full=Endoribonuclease Di...  2152  6.4e-223  1
sp|Q8R418.2|DICER_MOUSE RecName: Full=Endoribonuclease Di...  2120  1.6e-219  1
sp|P84634.1|DCL4_ARATH RecName: Full=Dicer-like protein 4      471  8.6e-72   5
sp|Q7S8J7.1|DCL1_NEUCR RecName: Full=Dicer-like protein 1...   505  3.0e-69   6
sp|A4RKC3.2|DCL1_MAGGR RecName: Full=Dicer-like protein 1...   481  3.5e-69   6
sp|Q0CW42.2|DCL1_ASPTN RecName: Full=Dicer-like protein 1...   464  4.8e-65   6
sp|Q1DKI1.2|DCL1_COCIM RecName: Full=Dicer-like protein 1...   498  8.4e-64   6
sp|A2RAF3.2|DCL1_ASPNC RecName: Full=Dicer-like protein 1...   466  5.3e-62   5
sp|Q09884.1|DCR1_SCHPO RecName: Full=Protein Dicer; AltNa...   415  7.7e-61   4
sp|A1CBC9.2|DCL1_ASPCL RecName: Full=Dicer-like protein 1...   428  1.2e-60   6
sp|A1DE13.1|DCL1_NEOFI RecName: Full=Dicer-like protein 1...   457  1.6e-60   6
sp|Q2VF19.1|DCL1_CRYPA RecName: Full=Dicer-like protein 1...   465  4.2e-60   4
sp|Q0UI93.2|DCL1_PHANO RecName: Full=Dicer-like protein 1...   490  3.8e-59   5
sp|Q4WVE3.3|DCL1_ASPFU RecName: Full=Dicer-like protein 1...   466  4.8e-59   6
sp|Q2U6C4.2|DCL1_ASPOR RecName: Full=Dicer-like protein 1...   474  8.5e-58   4
sp|Q2UNX5.1|DCL2_ASPOR RecName: Full=Dicer-like protein 2...   396  1.0e-53   5
sp|Q4WA22.2|DCL2_ASPFU RecName: Full=Dicer-like protein 2...   369  1.7e-51   5


>sp|P34529.2|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1
        Length = 1845

 Score = 9560 (3370.3 bits), Expect = 0., P = 0.
 Identities = 1845/1845 (100%), Positives = 1845/1845 (100%)
 Links = (1)

Query:     1 MVRVRADLQCFNPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQ 60
             MVRVRADLQCFNPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQ
Sbjct:     1 MVRVRADLQCFNPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQ 60

Query:    61 GGKRAFFVVEKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVI 120
             GGKRAFFVVEKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVI
Sbjct:    61 GGKRAFFVVEKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVI 120

Query:   121 TAQCLLDLIRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPVPRVLGLT 180
             TAQCLLDLIRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPVPRVLGLT
Sbjct:   121 TAQCLLDLIRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPVPRVLGLT 180

Query:   181 ASLIKAKVAPEKLMEQLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLG 240
             ASLIKAKVAPEKLMEQLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLG
Sbjct:   181 ASLIKAKVAPEKLMEQLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLG 240

Query:   241 IPNFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQ 300
             IPNFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQ
Sbjct:   241 IPNFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQ 300

Query:   301 VWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIR 360
             VWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIR
Sbjct:   301 VWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIR 360

Query:   361 LFEILETFNPEFQKERMKLEKAEHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPD 420
             LFEILETFNPEFQKERMKLEKAEHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPD
Sbjct:   361 LFEILETFNPEFQKERMKLEKAEHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPD 420

Query:   421 YVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDR 480
             YVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDR
Sbjct:   421 YVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDR 480

Query:   481 PLDMRSYVQSKGRARRAGSRYVITVEEKDTAAYCSKLPSDIFTRLVPHNQIIPIEENGVT 540
             PLDMRSYVQSKGRARRAGSRYVITVEEKDTAAYCSKLPSDIFTRLVPHNQIIPIEENGVT
Sbjct:   481 PLDMRSYVQSKGRARRAGSRYVITVEEKDTAAYCSKLPSDIFTRLVPHNQIIPIEENGVT 540

Query:   541 KYCAELLLPINSPIKHAIVLKNPMPNKKTAQMAVALEACRQLHLEGELDDNLLPKGRESI 600
             KYCAELLLPINSPIKHAIVLKNPMPNKKTAQMAVALEACRQLHLEGELDDNLLPKGRESI
Sbjct:   541 KYCAELLLPINSPIKHAIVLKNPMPNKKTAQMAVALEACRQLHLEGELDDNLLPKGRESI 600

Query:   601 AKLLEHIDEEPDEYAPGIAAKVGSSKRKQLYDKKIARALNESFVEADKECFIYAFELERF 660
             AKLLEHIDEEPDEYAPGIAAKVGSSKRKQLYDKKIARALNESFVEADKECFIYAFELERF
Sbjct:   601 AKLLEHIDEEPDEYAPGIAAKVGSSKRKQLYDKKIARALNESFVEADKECFIYAFELERF 660

t/data/dcr1_sp.WUBLASTP view on Meta::CPAN

 Identities = 34/136 (25%), Positives = 61/136 (44%)
 Links = 1-4-(3)-2

Query:  1282 VLPVAINEKSRSFSFEKESKAINGRLIRQRSEEYVSHIDSDIGLGVSPCLLLTALTTSNA 1341
             +LPV+ + K+ +         I   L+   +  ++ H   D  +  + C    ALT++ +
Sbjct:   871 ILPVSRHLKNSALLIPSILYHIENLLV---ASSFIEHFRLDCKIDTA-C---QALTSAES 923

Query:  1342 ADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLGIP 1401
                   +R E  GD FLK   +  ++    D  E +L F R K +SNCNLY++     +P
Sbjct:   924 QLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELP 983

Query:  1402 QLIVANKFDAHDSWLP 1417
             +  ++   +    W P
Sbjct:   984 KYALSTPLEIRH-WCP 998

 Score = 73 (30.8 bits), Expect = 7.7e-61, Sum P(4) = 7.7e-61
 Identities = 32/104 (30%), Positives = 43/104 (41%)
 Links = 1-(4)-3-2

Query:   513 YCSKLPSDIFTRLVPHNQIIPIEENGVTKYCAELLLPINSPIKHAIVLKNPMPNKKTAQM 572
             +C+ L  D++TR  P     P        YC E+ LP     K      +P  + + A+ 
Sbjct:   544 FCNTLSRDVYTRYYPTFTAQPCLSGW---YCFEVELP--KACKVPAAQGSPAKSIRKAKQ 598

Query:   573 AVALEACRQLHLEGELDDNLLPKG-RESIAKL--LEHIDEEPDE 613
               A   C  L   G +D +L P   R  IA L  LE  DE  DE
Sbjct:   599 NAAFIMCLDLIRMGLIDKHLKPLDFRRKIADLETLEE-DELKDE 641

 Score = 66 (28.3 bits), Expect = 1.9e-55, Sum P(4) = 1.9e-55
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Links = 1-4-(5)-2

Query:   919 SVPHSSQ-RQILVPELMDIHPISATLWNVIAALPSIFYRVNQLLLTDELRE 968
             S+P S Q R   + +L  I P+S  L N    +PSI Y +  LL+     E
Sbjct:   854 SIPKSQQVRSFYINDLY-ILPVSRHLKNSALLIPSILYHIENLLVASSFIE 903

 Score = 57 (25.1 bits), Expect = 4.2e-52, Sum P(3) = 4.2e-52
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Links = 1-(6)-2

Query:  1324 GLGVSPCLLLTALTTSNAADG--MSLERFETIGDSFLKFATTD-YLYHTLLDQHEGKLSF 1380
             G+ V  C L+              S  R   +   FL F  T+  L H  +   E  L F
Sbjct:   436 GIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASKFLIFLNTEELLIHERILHEEKNLKF 495

Query:  1381 ARSKEVSNCNLY 1392
             A S E+SN N++
Sbjct:   496 ALS-ELSNSNIF 506

 Score = 56 (24.8 bits), Expect = 4.5e-59, Sum P(4) = 4.5e-59
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Links = 1-(7)-3-2

Query:   499 SRYVITVEEKDTA--AYCSKLPSDIFTRLVPHN-QIIPIEENGVTKYCAEL-LLPINSPI 554
             S ++I  ++KD A  A C KLP  +   L  +  + IP  +   + Y  +L +LP++  +
Sbjct:   819 SEFMIPAKKKDKAPSALCKKLPLRLNYSLWGNRAKSIPKSQQVRSFYINDLYILPVSRHL 878

Query:   555 KHAIVL 560
             K++ +L
Sbjct:   879 KNSALL 884


>sp|A1CBC9.2|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent
            helicase dcl1
        Length = 1534

 Score = 428 (155.7 bits), Expect = 1.2e-60, Sum P(6) = 1.2e-60
 Identities = 151/514 (29%), Positives = 241/514 (46%)
 Links = (1)-4-5-7-3-2

Query:    12 NPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKR---AFFV 68
             +PR+YQ+EL ++A  +NTI  L TGSGKT IAVLLL+   +Q        GK    +FF+
Sbjct:   122 DPREYQIELFERAKAQNTIAVLDTGSGKTLIAVLLLRHV-LQNELNDRANGKPHRVSFFL 180

Query:    69 VEKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDL 128
             V+ V L  QQA  +  +    V    G   + LWD ++  ++ ++++ V+V TA+ L   
Sbjct:   181 VDSVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWD-RQVWEEHLQQNMVIVCTAEILNQC 239

Query:   129 IRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPV-PRVLGLTASLIKAK 187
             + ++++++  + +LIFDE HH     HPY  I+ D    K   P  PR+ G+TAS I  K
Sbjct:   240 LLNSHVRMNQINLLIFDEAHHTK-KDHPYARIIRD-SYFKASPPQRPRIFGMTASPIDTK 297

Query:   188 VAPEKLMEQLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLGIPNFDTV 247
                  ++    +LE+ +DS I T S +  L +  ++P E V     +    L  P F T 
Sbjct:   298 ---GDIIAAATRLETLLDSRIATTSKITLLRQVVSRPIEKV-----WAYDRLESP-FKTN 348

Query:   248 IEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQVWEKELG 307
             +    E   F N              + ++   +       +LG W + R    W   L 
Sbjct:   349 LHKLMEN-RFGNV-------------KALEGVFRFAWYASSELGRWCSDRA---WLYALA 391

Query:   308 KIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIRLFEILET 367
                   VLP        +A+++    +R  +   K+I  I+     V        E    
Sbjct:   392 ----DDVLPKLEGHVNKLAESTAAATER--DMAFKEITLIKEASNIVKAHTFNDPEFPGE 445

Query:   368 FNPEFQKERMKLEK----AEHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPDYVV 423
              +P+ +  + +L K    A     IIF  +RY A +L  +   +    P  +   P  ++
Sbjct:   446 LSPKVRLLQTELSKHFSHAPETKCIIFTQKRYTAKTLHELFTILSI--PHLR---PGVLI 500

Query:   424 GASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLD 483
             G    ++   +     ++Q   L +F + EINCL ATSV EEG+D+  CNLV++FD    
Sbjct:   501 GVRSGDIGGMNIT--FRQQFLALVKFRKGEINCLFATSVAEEGLDIPDCNLVVRFDLYHT 558

Query:   484 MRSYVQSKGRARRAGSRYVITVEEKDTAAYCSKL 517
             +  YVQS+GRAR   S Y   VE KD + + ++L
Sbjct:   559 LIQYVQSRGRARHYHSTYASMVE-KDNSDHEARL 591

 Score = 244 (91.0 bits), Expect = 1.2e-60, Sum P(6) = 1.2e-60
 Identities = 85/261 (32%), Positives = 122/261 (46%)
 Links = 1-4-5-7-3-(2)

Query:  1497 LLTQ-QH-ISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQK--DQKSDVPSPL 1552
             +L+Q +H + +K+IAD  EALIG  LL+ GP         MG+K +    D  S   S  
Sbjct:  1170 MLSQAKHALGEKTIADVCEALIGACLLSGGPEHRFD----MGVKAVSVFVDSPSHAVSRW 1225

Query:  1553 LRFIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINN---RV 1609
               +I     PN  +             Q+EEK+GY F+    L  A TH S  +    RV
Sbjct:  1226 KEYIGLYKPPNYQVRKAEGAETNLAL-QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRV 1284

Query:  1610 TGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKH 1669
               CYQRLEFLGD++LD +    LF       P  LT+ + A+V+N    +LAVK  F KH
Sbjct:  1285 P-CYQRLEFLGDSLLDMVCVEDLFHRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKH 1343

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