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#NEXUS

[Computer generated Nexus file using Nexus package designed
 by Weigang Qiu, Eugene Melamud and Peter Yang;  from the original
 kindly provided by Mario Fares (Fares & Wolfe, Mol Biol Evol. 2003 Oct; 20(10): 1588-97)]

begin taxa;
	dimensions ntax=59;
	taxlabels  Hs_theta Mm_theta Ce_tetha At_theta Sc_theta Hs_gamma Mm_gamma Ce_gamma Sc_gamma At_gamma Mm_beta Mm_alfa Hs_alfa Ce_alfa At_alfa Sc_alfa Gi_alfa Tv_alfa Hs_beta At_beta Sc_beta Ce_beta Gi_bet Hs_etha Mm_etha At_etha Ce_etha Sc_etha Tv_et...
end;
begin characters;
	dimensions ntax=59 nchar=687;
	format  datatype=protein gap=- missing=-;
	matrix
Aeropyruma	-------------MVEMAATGYPVLILKEGTQRTYGREALRANILAARVLAEMLKSSLGPRGLDKMLVDAFGD----ITVTNDGATIVKEM-----EIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDE-NLHPTIIIEGYTKAMEEALR-LVDEAAVPVEVEDD------SVLRRIAETTLASKFVGTGPERDKIISMVIDAIRTVAE------KRPDGGYEVDLD...
Aeropytrum2	-MVDRVIEMAIQQQPMTEPVGIPVIILKEGTQRSYGREALRANIMAVRAIAQILKTTYGPKGMDKMLVDSLGD----ITITNNGATILDKM-----DVAHPAAKMLVQISKGQEDEAGDGTKTTVIFAGELLKEAEKLLDI-NIHPTIIVEGYKEALRKASE-VIESIAEPVSYDDV------EKLKLIAKTSLNSK--AVAEARDYFAELAVEAVRTVAE------RR-GDRWYVDL...
Archaeoglobus	---------------MATLQGQPVLILREGTQRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGD----VVITNDGVTILKEI-----DVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQ-EIHPAIIANGYRYAAEKALE-ILNEIAIPISKDDD------EILKKIATTAMTGK--GAEVAIDKLAEIAVNAVKMIAE------ES-NGQVEV...
At_alfa	-------------------MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIG----DVTITNDGATILRML-----EVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRN-KIHPTSIISGYRLAMRESCK-YIEEKLVTKVEKLG----KVPLIN-CAKTSMSSK--LISGDSDFFANLVVEAVLSVKM------TNQRGEIKYPIKGIN...
At_beta	--------------------MPIDKIFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGR--GHAVTVTNDGATILKSL-----HIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAS-KIHPMTIIAGYRMASECARN-ALLKRVIDNKDNAEK--FRSDLLK-IAMTTLCSK--ILSQDKEHFAEMAVDAVFRLKG------STN-------LEAIQ...
At_delta	----------MAAVAAPMASKPRGSKAESFVDNKRREDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGE----VIITNDGATILNKM-----EVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTN-GIHPTVISDSLHKACGKAID-ILTAMAVPVELT------DRDSLVKSASTSLNSK--VVSQYSTLLAPLAVDAVLSVID------PEKPEIVD--LRDI...
At_epsilon	------MA----LAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGD----ITITNDGATILEQM-----DVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDR-GIHPIRIAEGYEMASRVAVE-HLERIAQKFEFDVN----NYEPLVQTCMTTLSSK--IVNRCKRSLAEIAVKAVLAVAD-------LERRDVN--LD...
At_etha	---------------MASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGS----VTISNDGATIMKLL-----DIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIED-GVHAQNLIRSYRTASTLAIA-KVKELAVSIEGKSVE--EKKGLLAKCAATTLSSK--LIGGEKEFFATMVVDAVMAIG-------NDDR------LNLIG...
At_gamma	-------------------MQAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGG----LVLTNDGHAILREI-----DVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALE-VIKQVSKPVDVEND------AAMKKLIQASIGTK--YVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYV...
At_theta	-----------MVGMSMQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDK----LFVTNDAATIVNEL-----EIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRM-GLHPSEIISGYTKAVSKAVEILEQLVETGSETMDVR---NKDEVISRMRAAVASK---QFGQEEIICSLVTDACIQVCPKN---------PTNFNVDNV...
At_zeta	---------------------MSVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGD----IKLTKDGNTLLKEMGAQKPQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDE-GMHPRVLVDGFEIAKRATLQ-FLDNFKTPVVMGDEV---DKEILKMVARTTLRTK--LYEGLADQLTDIVVNSVLCIRKP-----EEA-----IDLFMVE...
Ce_alfa	-------------------------MLTLGGERTSGESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVG----DVTITNDGATILKLL-----DVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISR-FVHPTTVINGYRLACREACK-YIQEHMAYDVNKLG----KAGLIN-VARTAMSSK--LINLDADMFSQMAVDALMAVEV------SGGPKGPVYPIKAVN...
Ce_beta	--------------------MLPVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSI-----GVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQ-RIHPQTIISGYRRALGIAQE-SLKKSSIESGDN-----IRDDLLK-IARTTLGSK--ILSQHKEHFAQLAVDAVLRLKG------SGN-------LDAIQ...
Ce_delta	------MPP-AVPAAAATARQSASGRERNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGD----VTITNDGATILNQM-----SVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSK-GIHPTTISESFQSAAAEAEK-ILDEMSSPVDLS------NDALLNKMATTSLNSK--VVSQHSWLLAPMAVNAVKKIIN------SENDSNVN--LKMI...
Ce_epsilon	-----MAQSSAQLLFDESGQPFIVMREQENQKRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGD----VTITNDGATIMEKM-----DVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDR-GIHPIKIADGFDLACKKALE-TLDSISDKFPVE------NRERLVETAQTSLGSK--IVNRSLRQFAEIAVDAVLSVAD-------IESKDVN--FE...
Ce_etha	------------------MMRPPIILLKDGTENKQGKGQIISNINACQVVADSIRTTLGPRGLDKLIVDSKGA----TTISNDGATILKLL-----DIVFPAASTMVDIARSQDAEVGDGTTSVVVLAAEILKQMKPFIED-GVHPQLLIRAIGKACEKTLK-NLADLEIKING--ET--ELREMLVKCAATTLSSK--LVSQERLFFANMIVDAVNTLD-------AHLP------LNMIG...
Ce_gamma	---------------MRGAGQQPIIVLSQGTKRESGHQVQIGNINACKTIADVIRTSLGPRAMLKMLMDPMGG----IVMTNDGNAILREI-----TVKHPAAKSMIEIARTQDEETGDGTTSVIILAGEVMA-HAQTYLEQKTHPTLIIKAYRQALEDMIQWSENKFSKTVDITDD------AEIAKVVKSCLGTK--MISKWMDLAVNISIQAVKTIR------VEKAGVREIDIKRYC...
Ce_tetha	-----------MAMKIPKS-GYNRFMKEGAQHFKGTDEAVQRNIEACTELASQIRSAYGPNGMNKMVINHIEK----LFVTNDAATILKEL-----EIQHPAARIIIMATEMQEKQIGDNTNTVVILAAALLEHAANLIHM-GMTPQEVAAGYEQAAEKALEILPTLVVK--EATDMK---NIEEVRQYIRSAITSK---QYDNEDIIADLVAKACVTTCPAN---------SFNFNVDNI...
Ce_zeta	--------------------MSSIQCLNPKAELARHAAALELNISGARGLQDVMRSNLGPKGTLKMLVSGAGD----IKLTKDGNVLLHEM-----AIQHPTASMIAKASTAQDDVTGDGTTSTVLLIGELLKQAESLVLE-GLHPRIVTEGFEWANTKTLE-LLEKFK----KEAPV---ERDLLVEVCRTALRTK--LHQKLADHITECVVDAVLAIRRD-----GEE-----PDLHMVE...
Gi_alfa	---------------------MTSNAIFLPGELNSGNSVRKENISATTALAGIIRTTLGPTGMDKMLIDSMG----EVTVTNDGATILQKL-----NVAHPAAKILVELSSLQDREVGDGTTSVVIFASEFLKEADELIGR-NMHPTIVIEGYQLALKKALN-YIEKRLKVNASALT----RENFLN-VALTSLSSK--IVSLTAEHFANIVVDAVFAVKH------ITEAGVTKYPIKSIG...
Gi_bet	------------------MEQATSRILKEGGSQERGDDARLSTLVGAIAISDMVKTTMGPKGMDKILQSVSG----GMNITNDGATILKSV-----VVDNPAARVLIDISRVQDETVGDGTTSVCVLAGEILRQAQQLLAK-RMHPMTIIEGFRAATDVALK-ALESIAVDHKQDAAA--FHTDLLN-IARTTLSSK--ILTSVQEHFAKMAVKCVLNMEG------DTN-------LKNIQI...
Gi_epsilon	MAQRINGAQLLGVSQDENGNPVYLMREGTEKKRARGLEAHKSNITIARALANTLRTSLGPRGMDKILVSGDRE----LTITNDGATILERM-----EVDNHIARLLVDLSKCQDNEIGDGTTGVVVLAGSLLEHAETLLDK-GIHPIRISDGYDMACDVAIK-HLESIATTYSFSAD----NKEPLIKAAMTSLGSK--VINRYHRTMAEVAVDAVFRVAD-------LQRNDVD--FE...
Gi_zeta	--------------------MSAIHALNQKAEHLRRGEALDMNIDAAEKLTKLIRTNFGPAGTYKMLVSGAGD----IKITKDGAVLLSEL-----PINHPIAAFIATAATAQDDIVGDGTTTMVLLVGELLRQAARWLAE-DVHPRVLVDGFELAKARVIS-FLDSYKQPLPTEERA---RYDTLRSIAHTSLVTK--VHADLANLLSDIVTEAVLIVEKA-----AESKEQSFIDLHMVE...
Haloferax	---------------MASRMQQPLYILAEGTNRTHGRSAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSGE----VVITNDGATILEKM-----DIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDD-DLHPTVIVEGYTEAARIAQD-AIDDMVLDVTLDDD-------LLRKVAESSMTGKG-TGDVTADVLAKHVVKAVQMVHE------DD---NGVFHRDD...
Hs_alfa	----------------------MEGPLSVFGDRSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIG----DVTITNDGATILKLL-----EVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQ-KIHPTSVISGYRLACKEAVR-YINENLIVNTDELG----RDCLIN-AAKTSMSSK--IIGINGDFFANMVVDAVLAIKY------TDIRGQPRYPVNSVN...
Hs_beta	---------------MASLSLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGR--DASLMVTNDGATILKNI-----GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAK-KIHPQTIIAGWREATKAARE-ALLSSAVDHGSDEVK--FRQDLMN-IAGTTLSSK--LLTHHKDHFTKLAVEAVLRLKG------SGN-------LEAIH...
Hs_delta	------MPENVAPRSGATAGAAGGRGKGAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGD----VTITNDGATILKQM-----QVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQK-GIHPTIISESFQKALEKGIE-ILTDMSRPVELS------DRETLLNSATTSLNSK--VVSQYSSLLSPMSVNAVMKVID------PATATSVD--LRDI...
Hs_epsilon	MSGCCTMASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGD----VTVTNDGATILSMM-----DVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDR-GIHPIRIADGYEQAARVAIE-HLDKISDSVLVDIK----DTEPLIQTAKTTLGSK--VVNSCHRQMAEIAVNAVLTVAD-------MERRDVD--FE...
Hs_etha	------------------MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGK----ATISNDGATILKLL-----DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEE-GLHPQIIIRAFRTATQLAVN-KIKEIAVTVKKADKV--EQRKLLEKCAMTALSSK--LISQQKAFFAKMVVDAVMMLD-------DLLQ------LKMIG...
Hs_gamma	------------------MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGG----IVMTNDGNAILREI-----QVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLS-VAEHFLEQQMHPTVVISAYRKALDDMIS-TLKKISIPVDISDS------DMMLNIINSSITTK--AISRWSSLACNIALDAVKMVQ------FEENGRKEIDIKKYA...
Hs_theta	-----------MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPKGMNKMVINHLEK----LFVTNDAATILREL-----EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRI-GLSVSEVIEGYEIACRKAHEILPNLVCC--SAKNLR---DIDEVSSLLRTSIMSK---QYGNEVFLAKLIAQACVSIFPD----------SGHFNVDNI...
Hs_zeta1	--------------------MAAIKAVNSKAEVARAR-QLWLSIYAPPRVQDVLRTNLGPKGTMKMLVSGAGD----IKLTKDGNVLLDEM-----QIQHPTASLIAKVATAQDGVTGDGTTTNVLIIGELLKQADLYISE-GLHPRIIAEGFEAAKIKALE-VLEEVK----VTKEM---KRKILLDVARTSLQTK--VHAELADVLTEVVVDSLFPVRRP-----PYP-----IDLFMV...
Hs_zeta2	--------------------MAAIKAVNSKAEVARARAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGD----IKLTKDGNVLLDEM-----QIQHPTASLIAKVATAQDDVTGDGTTSNVLIIGELLKQADLYISE-GLHPRIIAEGFEAAKIKALE-VLEEVK----VTKEM---KRKILLDVARTSLQTK--VHAELADVLTEVVVDSVLAVRRP-----GYP-----IDLFMV...
Methanococ	-----------------MAANQPVVVLPENVKRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGD----IVVTNDGVTILKEM-----SVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQ-NVHPTIVIKGYQLAVQKAQE-VLKEIAMDVKADDK------EILHKIAMTSITGK--GAEKAKEKLGEMIVEAVTAVVD------E--SGK--VDKD...
Mm_alfa	----------------------MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIG----DVTITNDGATILKLL-----EVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQ-KIHPTSVISGYRLACKEAVR-YINENLIINADELG----RDCLTN-TAKTSMSSK--IIGINGDYFANMVVDAVLAVKY------TDARGQPRYPINSVN...
Mm_beta	----------------------MEGPLSVFGDRSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIG----DVTITNDGATILKLL-----EVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQ-KIHPTSVISGYRLACKEAVR-YINENLIINTDELG----RDCLIN-AAKTSMSSK--IIGINGDYFANMVVDAVLAVKY------TDARGQPRYPVNSVN...
Mm_delta	------MPENVASRSGAPTAGPGSRGKSAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGD----VTITNDGATILKQM-----QVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQK-GIHPTIISESFQKALEKGLE-ILTDMSRPVQLS------DRETLLNSATTSLNSK--VVSQYSSLLSPMSVNAVMKVID------PATATSVD--LRDI...
Mm_epsilon	------MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGD----VTITNDGATILSMM-----DVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDR-GIHPIRIADGYEQAARIAIQ-HLDKISDKVLVDIN----NPEPLIQTAKTTLGSK--VINSCHRQMAEIAVNAVLTVAD-------MERRDVD--FE...
Mm_etha	------------------MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGK----ATISNDGATILKLL-----DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEE-GLHPQIIIRAFRTATQLAVN-KIKEIAVTVKKQDKV--EQRKMLEKCAMTALSSK--LISQQKVFFAKMVVDAVMMLD-------ELLQ------LKMIG...
Mm_gamma	-----------------MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGG----IVMTNDGNAILREI-----QVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLS-VAEHFLEQQMHPTVVISAYRMALDDMIS-TLKKISTPVDVNNR------EMMLSIINSSITTK--VISRWSSLACNIALDAVKTVQ------FEENGRKEIDIKKYA...
Mm_theta	-----------MALHVPKAPGFAQMLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINRLEK----LFVTNDAATILREL-----EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRI-GLSVSEVISGYEIACKKAHEILPELVCC--SAKNLR---DVDEVSSLLRTSIMSK---QYGSETFLAKLIAQACVSIFPD----------SGNFNVDNI...
Mm_zetaA	--------------------MAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGD----IKLTKDGNVLLHEM-----QIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISE-GLHPRIITEGFEAAKEKALQ-FLEQVK----VSKEM---DRETLIDVARTSLRTK--VHAELADVLTEAVVDSILAIRKK-----DEP-----IDLFMV...
Mm_zetaB	--------------------MAAIKIANPGAEVTRSQAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGD----IKLTKDGNVLLHEM-----QIQHPTASIIAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISK-GLHPRIITEGFDVAKTKALE-VLDEIK----VQKEM---KREILLDVARTSLQTK--VHAELADILTEAVVDSVLAIRRP-----GVP-----IDLFMV...
Pyrococcusalf	---------------MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGD----IVVTNDGATILDKI-----DLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQ-NIHPSIIIKGYALAAEKAQE-ILDEIAIRVDPDDE------ETLLKIAATSITGK--NAESHKELLAKLAVEAVKQVAE------KK-DGKYVV...
Sc_alfa	--------------MSQLFNNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIG----DFTVTNDGATILSLL-----DVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKN-KIHPTTIITGFRVALREAIR-FINEVLSTSVDTLG----KETLIN-IAKTSMSSK--IIGADSDFFSNMVVDALLAVKT------QNSKGEIKYPVKAVN...
Sc_beta	---------------------MSVQIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSAS---SNTCMVTNDGATILKSI-----PLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALD-ALTKAAVDNSHDKTM--FREDLIH-IAKTTLSSK--ILSQDKDHFAELATNAILRLKG------STN-------LEHIQ...
Sc_delta	----------------MSAKVPSN---ATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGE----IIISNDGHTILKQM-----AILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNK-GIHPTIIADSFQSAAKRSVD-ILLEMCHKVSLS------DREQLVRAASTSLSSK--IVSQYSSFLAPLAVDSVLKISD-------ENSKNVD--LNDI...
Sc_epsilon	----MPDLSNAIVAQDEMGTPFIIVKDQGNKKRQHGLEAKKSHILAARSVDSIIKTSLGPRGLDKILISPDGE----ITITNDGATILTQM-----ELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQK-GIHPIKIANGFDEAAKLAIS-KLEETCDDISASNDE--LFRDFLLRAAKTSLGSK--IVSKDHDRFAEMAVEAVINVMD-------KDRKDVD--FD...
Sc_etha	--------------MNFGSQTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQK----TTISNDGATILKLL-----DVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEE-GISSHLIMKGYRKAVSLAVE-KINELAVDITS-EKS--SGRELLERCARTAMSSK--LIHNNADFFVKMCVDAVLSLDR------NDLD------DKLIG...
Sc_gamma	-------------------MQAPVVFMNASQERTTGRQAQISNHAAAKAVADVIRTCLGPKAMLKMLLDPMGG----LVLTNDGHAILREI-----DVAHPAAKSMLELSRTQERRGGDGTTTVIILAGEILAQCAPYFIEKNIHPVIIIQALKKALTDALE-VIKQVSKPVDVEND------AAMKKLIQASIGTK--YVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYV...
Sc_theta	-----------MSLRLPQN-PNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGK----IIITNDAATMLREL-----DIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISM-GLSAVEIIQGYNMARKFTLKELDEMVVG--EITDKN---DKNELLKMIKPVISSK---KYGSEDILSELVSEAVSHVLPVAQ----QAGEIPYFNVDSI...
Sc_zeta	---------------------MSLQLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGN----IKLTKDGKVLLTEM-----QIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQE-GVHPRIITDGFEIARKESMK-FLDEFKIS-KTNLSN---DREFLLQVARSSLLTK--VDADLTEVLTPIVTDAVLSVYDA-----QADN----LDLHMVE...
Sulfolobus_beta	-MLSAVEKMSTTATVATTPEGIPVIILKEGSSRTYGKEALRINIAAVKAVEEALKSTYGPRGMDKMLVDSLGD----ITITNDGATILDKM-----DLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYK-EIHPTIIVSGFKKAEEQALK-TIEEIAQKVSVNDM------DILKKVAMTSLNSK--AVAGAREYLADIVAKAVTQVAE------LR-GDRW...
Tv_alfa	------------------MLPVTPGSLKIDGQRQQGENVRVQNVRAAMAVANVVRSSLGPIGLDKMLVDDIG----EVTITNDGATILNHL-----DVQHPAGKVLIQLSELQDREVGDGTTTVVLLAAELLRLGQDLINK-KVHANTIITGYRAAAKKAIA-FLKKSCAVSNDNLD----REILLK-VAKTSMNSK--ILNAYSDFFGNMVVDACLAVKT------PAG----KCPTNRVN...
Tv_delta	-------------MSQQSAPAASATNPPAFQGQDRPTDVRMSCILAAKSVADAVRSSLGPRGMDKLIQEKNGE----VIITNDGATILKHM-----GAAHPAAKLMVSMSQAQDVAAGDGTTSVVIFAGAFLSACKTLLER-KLHPSLVSDALRIATDEAIK-ILDQMRIPFGQGETFTEQEREILIDSARTSLSSK--LASQWSDILAPLAVDAVLRVHD---------GKHVD--LNDI...
Tv_etha	------------------MIRPPIILLREGVDQSQGLGQLISNINACHAIGEILASTLGPRGMDKLIHNSNNRR---AIVTNDGATVMKEL-----DIVHPAAQLLVDVAKSQDEEIGDGTTSVIVLSTSLLDAAKDFLED-GVHPQFICRCYRTALNAALK-KLDEVAVTIDG------SQREVLEQCAATTLRSK--LVSDSRYFFAPMIVDAVLQLD-------EDMR------LNDLG...
Tv_zeta	--------------------MAAVSQLNSQAELYRHNQALSMNLNASHSLADILKTNLGPCGTLKMLVGGAGD----VQLTKDGTVLLKNL-----TIIHPTAIMISRAAAAQDENTGDGTTSTIILIDAMLKQCERRLAE-GVHPRVLTTGLEDARDEALR-FIEKFK----TTPKV---DRDFLLNVARTSLCTK--LPPELIDQLTEIVTDAVLAIKRD-----GEK-----VNLFMVE...
sulfolobus	----------------MAA---PVLLLKEGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGD----VTITNDGATIVKDM-----EIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQ-NIHPTIIIEGYKKAYNKALE-LLPQLGTRIDIKDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAIVNVAE------PLPNGGYNVSLD...
thermoplasm	-----------------MIAGQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGD----IVITNDGVTILKEM-----DVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAEALINQ-NVHPTVISEGYRMASEEAKR-IIDEISTKIGKDEK------ELLIKLAQTSLNSK--SASVAKDKLAEISYEAVKSVAE------LR-DGKYYVDF...
;
end;
begin trees;
	tree FaresWolfeCCT = (((((Hs_theta:0.01,Mm_theta:0.03)5:0.24,Ce_tetha:0.29)4:0.06,At_theta:0.38)3:0.03,Sc_theta:0.39)2:0.33,((((((((Hs_zeta1:0.03,Hs_zeta2:0.00)13:0.06,Mm_zetaA:0.06)12:0.03,Mm_zetaB:0.10)11:0.09,Ce_zeta:0.23)10:0.02,At_zeta:0.26)9:0...
end;