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t/data/bug2942.blastx  view on Meta::CPAN

Sbjct:   274 PAKVKAFIDRVISIPLHDIAIPLSGFRWEFNKGNF 308

 Score = 125 (49.1 bits), Expect = 0., Sum P(11) = 0., Group = 1
 Identities = 27/41 (65%), Positives = 30/41 (73%), Frame = -3

Query: 14599 GFRSEXXXXXXXXXXHRASFPLRLQQILAGSRAVSPAIKIE 14477
             G RSE          HRASFPLRLQQIL+GSRAVSP+IK+E
Sbjct:   231 GSRSEMAAAAAMAA-HRASFPLRLQQILSGSRAVSPSIKVE 270


Parameters:
  B=1000000
  V=1000000
  W=5
  S2=65
  X=10
  cpus=8
  filter=seg
  hspsepqmax=10000
  hspmax=0
  topcomboN=1

  ctxfactor=5.77
  E=10

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +3      0   BLOSUM62        0.318   0.134   0.401    0.350   0.152   0.535  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.134   0.401    0.346   0.150   0.530  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.134   0.401    0.345   0.148   0.496  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.134   0.401    0.351   0.155   0.580  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.134   0.401    0.337   0.145   0.465  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.134   0.401    0.358   0.157   0.604  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0     4866      4532       8.3  48 5 n/a 10  0.0044  48
                                                    44  0.21    40
   +2      0     4866      4399       8.0  48 5 n/a 10  0.0044  48
                                                    44  0.21    40
   +1      0     4867      4373       8.0  48 5 n/a 10  0.0044  48
                                                    44  0.21    40
   -1      0     4867      4371       8.0  48 5 n/a 10  0.0044  48
                                                    44  0.21    40
   -2      0     4866      4254       9.9  47 5 n/a 10  0.0061  47
                                                    44  0.21    40
   -3      0     4866      4240       9.9  47 5 n/a 10  0.0061  47
                                                    44  0.21    40


Statistics:

  Database:  UNIPROT_B9GCX0
   Title:  UNIPROT_B9GCX0
   Posted:  3:30:56 PM CET Oct 29, 2009
   Created:  3:30:56 PM CET Oct 29, 2009
   Format:  XDF-1
   # of letters in database:  3829
   # of sequences in database:  1
   # of database sequences satisfying E:  1
  No. of states in DFA:  32,067 (6765 KB)
  Total size of DFA:  7905 KB (8709 KB)
  Time to generate neighborhood:  0.03u 0.01s 0.04t   Elapsed:  00:00:00
  No. of threads or processors used:  1
  Search cpu time:  0.00u 0.01s 0.01t   Elapsed:  00:00:00
  Total cpu time:  0.03u 0.03s 0.06t   Elapsed:  00:00:00
  Start:  Fri Oct 30 09:12:00 2009   End:  Fri Oct 30 09:12:00 2009