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t/data/bovin_small_intact.xml  view on Meta::CPAN

           <participantList>
             <proteinParticipant>
               <proteinInteractorRef ref="EBI-307814"/>
               <role>bait</role>
             </proteinParticipant>
             <proteinParticipant>
               <proteinInteractorRef ref="EBI-307845"/>
               <role>prey</role>
             </proteinParticipant>
           </participantList>
           <interactionType>
             <names>
               <shortLabel>physical interaction</shortLabel>
               <fullName>physical interaction</fullName>
             </names>
             <xref>
               <primaryRef db="psi-mi" id="MI:0218"/>
               <secondaryRef db="pubmed" id="14755292"/>
             </xref>
           </interactionType>
           <xref>
             <primaryRef db="intact" id="EBI-307855" secondary="cdk5rap3-cdk5r1-1"/>
             <secondaryRef db="go" id="GO:0045664" secondary="regulation of neuron different"/>
           </xref>
           <attributeList>
             <attribute name="kd">0.0</attribute>
           </attributeList>
         </interaction>
         <interaction>
           <names>
             <shortLabel>arf1-ddef1-1</shortLabel>
             <fullName>myristoylated Arf1 and ARFGAP ASAP1complex formation on the membrane surface in presence of AlFx</fullName>
           </names>
           <experimentList>
             <experimentRef ref="EBI-698495"/>
           </experimentList>
           <participantList>
             <proteinParticipant>
               <proteinInteractorRef ref="EBI-449051"/>
               <role>neutral</role>
             </proteinParticipant>
             <proteinParticipant>
               <proteinInteractorRef ref="EBI-698498"/>
               <role>neutral</role>
             </proteinParticipant>
           </participantList>
           <interactionType>
             <names>
               <shortLabel>direct interaction</shortLabel>
               <fullName>direct interaction</fullName>
             </names>
             <xref>
               <primaryRef db="psi-mi" id="MI:0407"/>
               <secondaryRef db="pubmed" id="14755292"/>
             </xref>
           </interactionType>
           <xref>
             <primaryRef db="intact" id="EBI-698541" secondary="arf1-ddef1-1"/>
           </xref>
           <attributeList>
             <attribute name="comment">liposome sedimentation: only 27% of myr-Arf1 GDP and 34% of ASAP1 PZA fragment were recovered in the pelleted membrane fraction if alone. The addition of AlFx did not change the sedimentation properties of each ...
             <attribute name="stimulation">AlFx (Aluminum fluoride) stabilize the complex formation between Arf1-GDP and PZA fragment of ASAP1 by mimicking activated form of Arf1, Arf1-GDP-AlFx.</attribute>
             <attribute name="comment">Both proteins are purified to homogeneity. Myristoylated Arf1 was produced by co-expressing in E. coli the yeast N-myristoyl-transferase.</attribute>
             <attribute name="kd">1.0</attribute>
           </attributeList>
         </interaction>
         <interaction>
           <names>
             <shortLabel>copa-cope-3</shortLabel>
             <fullName>Cop IP: interaction between bovin COP alpha (bait) and bovin COP epsilon (prey)</fullName>
           </names>
           <experimentList>
             <experimentRef ref="EBI-620513"/>
           </experimentList>
           <participantList>
             <proteinParticipant>
               <proteinInteractorRef ref="EBI-620457"/>
               <role>prey</role>
             </proteinParticipant>
             <proteinParticipant>
               <proteinInteractorRef ref="EBI-620400"/>
               <role>bait</role>
             </proteinParticipant>
           </participantList>
           <interactionType>
             <names>
               <shortLabel>physical interaction</shortLabel>
               <fullName>physical interaction</fullName>
             </names>
             <xref>
               <primaryRef db="psi-mi" id="MI:0218"/>
               <secondaryRef db="pubmed" id="14755292"/>
             </xref>
           </interactionType>
           <xref>
             <primaryRef db="intact" id="EBI-620515" secondary="copa-cope-3"/>
           </xref>
           <attributeList>
             <attribute name="kd">1.0</attribute>
           </attributeList>
         </interaction>
         <interaction>
           <names>
             <shortLabel>copb-copd-3</shortLabel>
             <fullName>CoIP:  interaction between COP delta (bait) and  COP beta (prey)</fullName>
           </names>
           <experimentList>
             <experimentRef ref="EBI-620513"/>
           </experimentList>
           <participantList>
             <proteinParticipant>
               <proteinInteractorRef ref="EBI-620488"/>
               <role>prey</role>
             </proteinParticipant>
             <proteinParticipant>
               <proteinInteractorRef ref="EBI-620432"/>
               <role>bait</role>
             </proteinParticipant>
           </participantList>
           <interactionType>
             <names>
               <shortLabel>physical interaction</shortLabel>