BioPerl
view release on metacpan or search on metacpan
t/data/D10483.gbk view on Meta::CPAN
AUTHORS Lee,N., Gielow,W., Martin,R., Hamilton,E. and Fowler,A.
TITLE The organization of the araBAD operon of Escherichia coli
JOURNAL Gene 47 (2-3), 231-244 (1986)
MEDLINE 87163495
PUBMED 3549454
REFERENCE 29
AUTHORS Gronger,P., Manian,S.S., Reilander,H., O'Connell,M., Priefer,U.B.
and Puhler,A.
TITLE Organization and partial sequence of a DNA region of the Rhizobium
leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC,
nifA, nifB and a novel open reading frame
JOURNAL Nucleic Acids Res. 15 (1), 31-49 (1987)
MEDLINE 87146339
PUBMED 3029674
REFERENCE 30
AUTHORS Nonet,M.L., Marvel,C.C. and Tolan,D.R.
TITLE The hisT-purF region of the Escherichia coli K-12 chromosome.
Identification of additional genes of the hisT and purF operons
JOURNAL J. Biol. Chem. 262 (25), 12209-12217 (1987)
MEDLINE 87308226
PUBMED 3040734
REFERENCE 31
AUTHORS Karpel,R., Olami,Y., Taglicht,D., Schuldiner,S. and Padan,E.
TITLE Sequencing of the gene ant which affects the Na+/H+ antiporter
activity in Escherichia coli
JOURNAL J. Biol. Chem. 263 (21), 10408-10414 (1988)
MEDLINE 88273145
PUBMED 2839489
REFERENCE 32
AUTHORS Jaiswal,A.K., McBride,O.W., Adesnik,M. and Nebert,D.W.
TITLE Human dioxin-inducible cytosolic NAD(P)H:menadione oxidoreductase.
cDNA sequence and localization of gene to chromosome 16
JOURNAL J. Biol. Chem. 263 (27), 13572-13578 (1988)
MEDLINE 88330879
PUBMED 2843525
REFERENCE 33
AUTHORS Lozoya,E., Hoffmann,H., Douglas,C., Schulz,W., Scheel,D. and
Hahlbrock,K.
TITLE Primary structures and catalytic properties of isoenzymes encoded
by the two 4-coumarate: CoA ligase genes in parsley
JOURNAL Eur. J. Biochem. 176 (3), 661-667 (1988)
MEDLINE 89005119
PUBMED 3169018
REFERENCE 34
AUTHORS Sato,S., Nakada,Y. and Shiratsuchi,A.
TITLE IS421, a new insertion sequence in Escherichia coli
JOURNAL FEBS Lett. 249 (1), 21-26 (1989)
MEDLINE 89252065
PUBMED 2542093
REFERENCE 35
AUTHORS Roa,B.B., Connolly,D.M. and Winkler,M.E.
TITLE Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH
operon of Escherichia coli K-12
JOURNAL J. Bacteriol. 171 (9), 4767-4777 (1989)
MEDLINE 89359108
PUBMED 2670894
REFERENCE 36
AUTHORS Matsubara,Y., Indo,Y., Naito,E., Ozasa,H., Glassberg,R.,
Vockley,J., Ikeda,Y., Kraus,J. and Tanaka,K.
TITLE Molecular cloning and nucleotide sequence of cDNAs encoding the
precursors of rat long chain acyl-coenzyme A, short chain
acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases. Sequence
homology of four enzymes of the acyl-CoA dehydrogenase family
JOURNAL J. Biol. Chem. 264 (27), 16321-16331 (1989)
MEDLINE 89380240
PUBMED 2777793
REFERENCE 37
AUTHORS Minami-Ishii,N., Taketani,S., Osumi,T. and Hashimoto,T.
TITLE Molecular cloning and sequence analysis of the cDNA for rat
mitochondrial enoyl-CoA hydratase. Structural and evolutionary
relationships linked to the bifunctional enzyme of the peroxisomal
beta-oxidation system
JOURNAL Eur. J. Biochem. 185 (1), 73-78 (1989)
MEDLINE 90032688
PUBMED 2806264
REFERENCE 38
AUTHORS Chen,H., Sun,Y., Stark,T., Beattie,W. and Moses,R.E.
TITLE Nucleotide sequence and deletion analysis of the polB gene of E.
coli
JOURNAL DNA Cell Biol. 9, 613-635 (1990)
REFERENCE 39
AUTHORS Angerer,A., Gaisser,S. and Braun,V.
TITLE Nucleotide sequences of the sfuA, sfuB, and sfuC genes of Serratia
marcescens suggest a periplasmic-binding-protein-dependent iron
transport mechanism
JOURNAL J. Bacteriol. 172 (2), 572-578 (1990)
MEDLINE 90130288
PUBMED 2404942
REFERENCE 40
AUTHORS Ricca,E. and Calvo,J.M.
TITLE The nucleotide sequence of leuA from Salmonella typhimurium
JOURNAL Nucleic Acids Res. 18 (5), 1290 (1990)
MEDLINE 90206796
PUBMED 2181403
REFERENCE 41
AUTHORS Schaaff,I., Hohmann,S. and Zimmermann,F.K.
TITLE Molecular analysis of the structural gene for yeast transaldolase
JOURNAL Eur. J. Biochem. 188 (3), 597-603 (1990)
MEDLINE 90235831
PUBMED 2185015
REFERENCE 42
AUTHORS Rosenthal,E.R. and Calvo,J.M.
TITLE The nucleotide sequence of leuC from Salmonella typhimurium
JOURNAL Nucleic Acids Res. 18 (10), 3072 (1990)
MEDLINE 90272436
PUBMED 2190189
REFERENCE 43
AUTHORS Chen,H., Lawrence,C.B., Bryan,S.K. and Moses,R.E.
TITLE Aphidicolin inhibits DNA polymerase II of Escherichia coli, an
alpha-like DNA polymerase
JOURNAL Nucleic Acids Res. 18 (23), 7185-7186 (1990)
MEDLINE 91088346
PUBMED 2124684
REFERENCE 44
AUTHORS Mallonee,D.H., White,W.B. and Hylemon,P.B.
TITLE Cloning and sequencing of a bile acid-inducible operon from
Eubacterium sp. strain VPI 12708
JOURNAL J. Bacteriol. 172 (12), 7011-7019 (1990)
MEDLINE 91072253
PUBMED 2254270
REFERENCE 45
t/data/D10483.gbk view on Meta::CPAN
/protein_id="BAB96617.1"
/db_xref="GI:21321930"
/translation="MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG
SLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPLDRLTPLLEAPDADELLNWL
RRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP
NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVA
EEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLAE
AAAS"
gene complement(50888..51265)
/gene="apaG"
CDS complement(50888..51265)
/gene="apaG"
/note="ORF_ID:o106#1
similar to PIR Accession Number A30273"
/codon_start=1
/transl_table=11
/product="ApaG protein"
/protein_id="BAB96618.1"
/db_xref="GI:21321931"
/translation="MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQ
LLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMI
DENGVPFSIDIPVFRLAVPTLIH"
gene complement(52087..53076)
/gene="pdxA"
CDS complement(52087..53076)
/gene="pdxA"
/note="ORF_ID:o106#2
similar to PIR Accession Number JV0026"
/codon_start=1
/transl_table=11
/product="PdxA protein"
/protein_id="BAB96619.1"
/db_xref="GI:21321932"
/translation="MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT
NRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLA
RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV
ALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM
GTEEIDTIIPVLNELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ
GFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ"
CDS complement(53076..53873)
/note="ORF_ID:o106#3
similar to PIR Accession Number PV0009"
/codon_start=1
/transl_table=11
/product="Hypothetical protein 98 (pdx 5' region)"
/protein_id="BAB96620.1"
/db_xref="GI:21321933"
/translation="MGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQAR
NGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGF
HILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAA
AAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELL
DTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN"
gene complement(53840..54361)
/gene="surA"
CDS complement(53840..54361)
/gene="surA"
/note="ORF_ID:o106#4
similar to PIR Accession Number S40574"
/codon_start=1
/transl_table=11
/product="Survival protein SurA precursor (peptidyl-prolyl
cis-trans isomerase SurA) (EC 5.2.1.8) (PPiase) (rotamase
C)."
/protein_id="BAB96621.1"
/db_xref="GI:21321934"
/translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN
IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQKSNPW
RSRWVTKTTPALS"
gene complement(54414..56768)
/gene="imp"
/note="synonym: ostA"
CDS complement(54414..56768)
/gene="imp"
/note="ORF_ID:o106#5
similar to SwissProt Accession Number P31554"
/codon_start=1
/transl_table=11
/product="Organic solvent tolerance protein precursor."
/protein_id="BAB96622.1"
/db_xref="GI:21321935"
/translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ
GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVR
TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKV
SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP
QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE
AKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTL
EPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRI
YDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRG
GIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGI
SQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWD
NDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL"
gene 57023..57838
/gene="yabH"
CDS 57023..57838
/gene="yabH"
/note="ORF_ID:o106#6
similar to SwissProt Accession Number P31680"
/codon_start=1
/transl_table=11
/product="Hypothetical 30.6 kd protein in folA-hepA
intergenic region (orf81)."
/protein_id="BAB96623.1"
/db_xref="GI:21321936"
/translation="MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWF
ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFR
VGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEE
LGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDA
TTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK"
gene 58625..58783
/gene="yabP"
CDS 58625..58783
/gene="yabP"
/note="ORF_ID:o106#7
similar to SwissProt Accession Number P39220"
/codon_start=1
/transl_table=11
/product="Hypothetical 5.9 kd protein in surA-hepA
intergenic region."
/protein_id="BAB96624.1"
/db_xref="GI:21321937"
/translation="MRDCYLGKKTMKGSNDILYERPGWNANLGVLPRTVLPRTVLTRT
VLTWTVLP"
gene 58780..58938
/gene="yabQ"
CDS 58780..58938
/gene="yabQ"
/note="ORF_ID:o106#8
similar to SwissProt Accession Number P39221"
/codon_start=1
/transl_table=11
/product="Hypothetical 5.7 kd protein in surA-hepA
intergenic region."
/protein_id="BAB96625.1"
/db_xref="GI:21321938"
/translation="MNGATSLYDEVIIINKIPPKKIDTKGVATEEVATKKVLLNKLLT
t/data/D10483.gbk view on Meta::CPAN
PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVV
GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYAN
SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDN
ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
"
gene 89294..89752
/gene="yabB"
CDS 89294..89752
/gene="yabB"
/note="ORF_ID:o109#9
similar to PIR Accession Number S14388"
/codon_start=1
/transl_table=11
/product="Hypothetical protein C."
/protein_id="BAB96649.1"
/db_xref="GI:21321962"
/translation="MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIYHPC
LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA
GLTKEVMLVGQFNKFELWDETTWHQQVKEDIDAEQLATGDLSERLQDLSL"
gene 89754..90695
/gene="yabC"
CDS 89754..90695
/gene="yabC"
/note="ORF_ID:o109#10
similar to SwissProt Accession Number P18595"
/codon_start=1
/transl_table=11
/product="Hypothetical 34.9 kd protein in fruR-ftsL
intergenic region (orfB)."
/protein_id="BAB96650.1"
/db_xref="GI:21321963"
/translation="MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ
LGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDL
GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERF
AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE
IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKL
GGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA"
gene 90692..91024
/gene="ftsL"
CDS 90692..91024
/gene="ftsL"
/note="ORF_ID:o110#1
similar to PIR Accession Number S14387"
/codon_start=1
/transl_table=11
/product="Cell division protein FtsL"
/protein_id="BAB96651.1"
/db_xref="GI:21321964"
/translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFI
CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT
EKLQMQTC"
gene 91074..92840
/gene="ftsI"
/note="synonym: pbpB"
CDS 91074..92840
/gene="ftsI"
/note="ORF_ID:o110#2
similar to PIR Accession Number A93123"
/codon_start=1
/transl_table=11
/product="Penicillin-binding protein 3 precursor."
/protein_id="BAB96652.1"
/db_xref="GI:21321965"
/translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW
LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY
RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
PPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI
NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD
ALTTGDKNEFVINQGEGTGGRS"
gene 92827..94314
/gene="murE"
CDS 92827..94314
/gene="murE"
/note="ORF_ID:o110#3
similar to PIR Accession Number S40595"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13) murE"
/protein_id="BAB96653.1"
/db_xref="GI:21321966"
/translation="MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGH
QADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFY
HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTG
SAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM
EHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKA
TEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAA
RLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK
GKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTC
AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA"
gene 94311..95669
/gene="mra"
/note="synonym: murF"
CDS 94311..95669
/gene="mra"
/note="ORF_ID:o110#4
similar to SwissProt Accession Number P11880"
/codon_start=1
/transl_table=11
/product="UDP-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate-d-alanyl -d- alanyl ligase (EC 6.3.2.15)
(UDP-murnac-pentapeptide synthetase)
(d-alanyl-d-alanine-adding enzyme)."
/protein_id="BAB96654.1"
/db_xref="GI:21321967"
/translation="MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALK
GERFDAHDFADQAKAGAAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARV
VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG
ANHQGEIAWTVSLTRPERALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMN
ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP
LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYN
ANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGK
QSHAISTASGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENG
TC"
gene 95663..96745
/gene="mraY"
( run in 0.700 second using v1.01-cache-2.11-cpan-39bf76dae61 )