BioPerl-DB
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t/data/AP000868.gb view on Meta::CPAN
repeat_region complement(27731..27883)
/note="L1MEc: matches 679 to 837 of consensus"
repeat_region complement(27909..28078)
/note="AluJo: matches 124 to 293 of consensus"
repeat_region 28615..29091
/note="L2: matches 2735 to 3265 of consensus"
repeat_region 31003..31232
/note="MIR: matches 10 to 259 of consensus"
repeat_region 32097..32219
/note="MIR3: matches 36 to 158 of consensus"
repeat_region complement(32367..32650)
/note="AluJb: matches 1 to 286 of consensus"
repeat_region 33309..33436
/note="L2: matches 3134 to 3264 of consensus"
repeat_region complement(33681..33786)
/note="L2: matches 3199 to 3308 of consensus"
repeat_region 34120..34290
/note="MER5A: matches 2 to 187 of consensus"
repeat_region complement(36857..37015)
/note="MER4A: matches 261 to 466 of consensus"
repeat_region complement(37016..37108)
/note="MER4A: matches 1 to 98 of consensus"
repeat_region complement(37111..37459)
/note="MLT2B2: matches 101 to 477 of consensus"
repeat_region complement(37465..37675)
/note="AluSg/x: matches 90 to 306 of consensus"
repeat_region complement(37676..37767)
/note="MLT2B2: matches 1 to 95 of consensus"
repeat_region complement(37908..38394)
/note="MER31A: matches 1 to 485 of consensus"
repeat_region complement(38413..38707)
/note="AluSc: matches 1 to 294 of consensus"
repeat_region complement(38905..39443)
/note="L1MC4a: matches 5297 to 5736 of consensus"
repeat_region complement(39957..40059)
/note="L2: matches 3167 to 3270 of consensus"
repeat_region complement(40271..40366)
/note="L2: matches 2957 to 3058 of consensus"
repeat_region complement(40367..40884)
/note="MER4C: matches 2 to 465 of consensus"
repeat_region complement(40885..41109)
/note="L2: matches 2784 to 2957 of consensus"
repeat_region 41110..41435
/note="AluJb: matches 1 to 309 of consensus"
repeat_region complement(41436..41656)
/note="L2: matches 2550 to 2784 of consensus"
repeat_region complement(42552..43939)
/note="L1PA15: matches 4780 to 6165 of consensus"
repeat_region complement(45781..46404)
/note="MER4B: matches 1 to 779 of consensus"
repeat_region 46607..47082
/note="LOR1a: matches 1 to 497 of consensus"
misc 1..19151
/note="Component DNA fragment"
/note="accession=AP002765.3"
/note="start=159020"
/note="end=178170"
/note="orientation=1"
variation complement(2261..2261)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:552820"
/db_xref="HGBASE:SNP000375829"
variation 6896..6896
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:475710"
/db_xref="HGBASE:SNP000368989"
variation 8597..8597
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:552467"
/db_xref="HGBASE:SNP001202646"
variation 9185..9185
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:557862"
/db_xref="HGBASE:SNP000376288"
variation 9242..9242
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:558021"
/db_xref="HGBASE:SNP000843781"
variation complement(9593..9593)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:655756"
/db_xref="HGBASE:SNP000458091"
variation 10744..10744
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:503766"
/db_xref="HGBASE:SNP000076194"
variation complement(11324..11324)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:627134"
/db_xref="HGBASE:SNP000501198"
variation complement(11580..11580)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:625888"
/db_xref="HGBASE:SNP000410419"
variation complement(12055..12055)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:623707"
variation complement(12298..12298)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1791700"
/db_xref="HGBASE:SNP000404217"
/db_xref="TSC-CSHL:TSC0947239"
variation 15872..15872
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2276410"
prediction join(complement(15914..16090))
variation 16640..16640
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2282646"
/db_xref="HGBASE:SNP001239633"
variation 17550..17550
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2126708"
/db_xref="HGBASE:SNP001310527"
/db_xref="TSC-CSHL:TSC1134267"
misc 19152..181589
/note="Component DNA fragment"
/note="accession=AP000868.4"
/note="start=19153"
/note="end=181590"
/note="orientation=1"
variation 19560..19560
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2126709"
/db_xref="HGBASE:SNP001310528"
/db_xref="TSC-CSHL:TSC1134268"
variation complement(19688..19688)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:10904"
/db_xref="HGBASE:SNP000017373"
variation complement(22574..22574)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2282644"
/db_xref="HGBASE:SNP001241241"
variation complement(23148..23148)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:663471"
/db_xref="HGBASE:SNP000668983"
variation complement(23159..23159)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1720331"
/db_xref="HGBASE:SNP000606798"
variation complement(23419..23419)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:671898"
/db_xref="HGBASE:SNP000519992"
variation complement(24698..24698)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2282643"
/db_xref="HGBASE:SNP001357715"
prediction join(complement(24827..25228),complement(23955..24249),
complement(23394..23554),complement(22473..22662),
complement(21816..21935),complement(20460..21331))
variation complement(25549..25549)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2282642"
/db_xref="HGBASE:SNP001241241"
variation complement(25566..25566)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2282641"
/db_xref="HGBASE:SNP001241241"
variation complement(26578..26578)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1880058"
/db_xref="HGBASE:SNP000858034"
/db_xref="TSC-CSHL:TSC0891347"
variation complement(28686..28686)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1791715"
/db_xref="HGBASE:SNP000423743"
variation complement(29269..29269)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:682246"
variation complement(32214..32214)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1940185"
/db_xref="HGBASE:SNP000860124"
/db_xref="TSC-CSHL:TSC1009511"
variation complement(33267..33267)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1557429"
/db_xref="HGBASE:SNP000400840"
/db_xref="TSC-CSHL:TSC0444634"
variation complement(33395..33395)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1557428"
/db_xref="HGBASE:SNP000400839"
/db_xref="TSC-CSHL:TSC0444633"
variation complement(33396..33396)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1557427"
/db_xref="HGBASE:SNP000400838"
/db_xref="TSC-CSHL:TSC0444632"
variation complement(33424..33424)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1557426"
/db_xref="HGBASE:SNP000400837"
/db_xref="TSC-CSHL:TSC0444631"
variation complement(33565..33565)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1557425"
/db_xref="HGBASE:SNP000400836"
/db_xref="TSC-CSHL:TSC0444630"
variation 34696..34696
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1939924"
/db_xref="HGBASE:SNP000859985"
/db_xref="TSC-CSHL:TSC1009047"
variation 34809..34809
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1939925"
/db_xref="HGBASE:SNP000859986"
/db_xref="TSC-CSHL:TSC1009048"
variation complement(34928..34928)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1893061"
/db_xref="HGBASE:SNP000858271"
/db_xref="TSC-CSHL:TSC0919478"
variation 35738..35738
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2091068"
/db_xref="HGBASE:SNP001309950"
/db_xref="TSC-CSHL:TSC1312336"
variation 35970..35970
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:2272142"
/db_xref="HGBASE:SNP001314474"
variation 37832..37832
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1940191"
/db_xref="HGBASE:SNP000860129"
/db_xref="TSC-CSHL:TSC1009519"
variation complement(40576..40576)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:629647"
/db_xref="HGBASE:SNP000763754"
variation complement(40807..40807)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:628708"
/db_xref="HGBASE:SNP000111700"
variation complement(40856..40856)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:634148"
/db_xref="HGBASE:SNP000528519"
variation complement(40872..40872)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:607154"
/db_xref="HGBASE:SNP000380635"
variation complement(42902..42902)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1148082"
variation complement(42996..42996)
/replace=""
/evidence="not_experimental"
/db_xref="dbSNP:1291089"
/db_xref="HGBASE:SNP000157115"
BASE COUNT 52693 a 34921 c 36093 g 57882 t
ORIGIN
1 gaattcagtt gctggctctg ccacttactt ctgagtggcc tcaaattttg taacctctct
61 ggttaaaatc agctgttttc caattgacct tagccctggc ctttgctaac attaaatgag
121 tgttgtcacc actctaagct ttaattcctt cacatagaaa atgaagagat tggatagacc
181 agacaattgc cacatcccct tccaaatcca ggattctata gttctagtag gaagcaagga
241 aacaaaacat ttcagtttat tgtttggtat aaatgaatca tcttcttctt tgaagtcctt
301 gttaatcaac tttcccataa gccagaattc atcactccca ctgggccttg tgaaaatggg
361 aaaacatctg aataatggac tattgctggg gctttggaac cacactgacc tgtcttcttc
421 ctcggccgta tgcatatgat ggacacctgg acacggtact tagcacccta aacatcagct
481 tcccagtttg taaactggag ttagtaactg agcatccctc acagagttat tgtaatgact
541 aagtgagata atttatatgt agataaaatg ccttgcctct aaaaaatatt cagtgatgtt
601 aagctattgc tttcttttta tttacttgtt tgttgaaata atttatatgt ggtgaagtgt
661 ccaaattgta tacacctcaa tagatcttta catctgtata tacctctgtg acaaccccta
721 gaacaagata cagaacattt ctagcacaac agaaggctca cttctactcc ctttcagtaa
781 atatccaact cccaccaaag taaccaatat tctgaccttt atcaccatag attagttttt
841 cctgttctca aacttcatct atgtatgtat gtatgtatgt gtgtatctat ctatctatct
901 ctatcatcta tatctatctc tatcatctat atctatctat catctatacc tatcatctat
961 atctatcata tctatctatc tatctatcta tctatctatc tatctatcta tctaattttt
1021 gaaacagagt ctcagtcacc caggctggag tgcagtggta cgaccttggc tcactgcaac
1081 caccacctcc caagttcaag tgattctcat gcctcagcct cctgagtagc tgggaccata
1141 ggcctgtgcc accataccca gctcattttt gtatttttag tagacagggt tttgccacgt
1201 tggccaggct ggtcttgaac tcctgatgtt aagtgatccg cccaccttgg cctcccaaag
1261 tgctggcatt tcaggtgtga gccaccacac ctggccactt cacatgaata taatcataca
1321 ttatgtgatc tttagagtct ggcttctctc aatcaatatt atatttttag tgagattcat
1381 tcatgttgct gcaagtagca ataacatttt ggtcttcatt gctgtataac attccactta
1441 ttgcatacca caatttattt atatactgta ctatttatgg acatttgagt tgcttccttt
1501 ttttgctgtt aaaaaaataa ttttctatga gctacttacc catgtctttg gtttatgtaa
1561 gcactcattt ccgttgatat acacccagca gtgaaattgc tagggcatag agtatttgta
1621 aggttaactt tagtagatcc taccaagcag ttcttggtag tacaagcagt gcaagtgctt
1681 gtaacagttt acattcctcc cagcagtgtg aaaggtttcc agttgctcag ctgcttcacc
1741 atcactgggt tttctgaatt cttttcattt agtcattcta gtggcaatag ggtagtatct
1801 cattgagctt tcaatttgca tgttcctgat gactaaaaat gttgattact ttttcctgcg
1861 ctttttgtcc atttcgatat cctcacttgt gaagtgccta ttcaggtccc ttgcacctca
1921 aaaatgttag ctattatttt gtatcatact aattgtgctt ttaagttatc cgtatatcta
1981 tctactctcc aaatagatga taagcccttt gatatgcaag gtctgtgcgt cactcattta
2041 cgaattctta gtgcctaacg taagactcat gttatacatt cgttgaatac attgtcaaac
2101 gtctaggact cagcagatca tggcaaaatg tcgccatctg gtgtctgcag ggaatgagat
2161 gtggaggatg caaagccagc tggctggata attcattgtt ttccatgtga gctttctctt
2221 atgtacgatt taaaaaatat gtatatattg caaattgcct ctgcatactt gattttaaaa
2281 atattttcta tatgtacttt catttttaaa aactcaattt aaagtgcaaa cttgtggaac
2341 agaaaaagtt ccacaatgac taaattcttt actaaacaat tactaaacaa ttcactaaac
2401 taaattcttt agtaattgtt tacattttca agagttgggt gctgtattca tagatgaaac
2461 aataagtact tactatattc tagtcctgaa gtttattcaa gagatataag gtgctcatag
2521 gctagtaagg aagaaacaaa aaaatcagcc tggagtatta taataaatgc cttaaaatag
2581 gtgtttgttc gttcattcgt tcactcactc attcatcatt caacatatat tattgagcat
2641 ttattctgta ccaggcattg tcacaggtac tataaaccca aacgtgtgtg tcctaaagtg
2701 tgactgctct aagaaaacct atagtaaaaa tatatatata atttttcaag gatttggaac
2761 tttggtatat tttcctttga gtataagctg ctgtagacgg taggccatgt gagaccccag
2821 cttctattag ggttacacat agaacaagat ggccctagtt gaaaatactt ttccataaag
2881 tgtactgagg tggggaggag gtggcgaact tcactgctct tctcaactct ttcttccctc
2941 tactcactgc tcctcaatcc accaccaaga caaatggtaa caatggattg atcaggttta
3001 tttgtttgtt ttttgagacg gggtcttgct ctgtcaccca ggctggagtg cagtggtgtg
3061 atcacaactt actgcagcct caaccccagg ctcaagcaat cctcctacct cagcttcctc
3121 agtagctagg actacaggca tgtgccacca tgcccagcta attaaaacaa cattattttg
3181 tagatatggg gtccccacca tgttgcctag actggcctgg aactcctgag ctcaagcgat
3241 cctcccaccg cagcctctca aagtgcttgg attataggtg tgagccaccg tgcctggctt
3301 gatcaggttt agaaacattg tagtgcccat gggtaaagtc tctgtccagg ttacaggcta
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