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  maskextra=20
  gi
  novalidctxok
  nonnegok
  cpus=1
  golmax=20
  golfraction=1

  ucdb
  ctxfactor=2.00
  E=0.00017567

  Query                        -----  As Used  -----    -----  Computed  ----
  Strand MatID Matrix name     Lambda    K       H      Lambda    K       H
   +1      0   +5,-11          0.269   0.411   1.18     same    same    same
               Q=11,R=11       0.250   0.253   0.890     n/a     n/a     n/a
   -1      0   +5,-11          0.269   0.411   1.18     same    same    same
               Q=11,R=11       0.250   0.253   0.890     n/a     n/a     n/a

  Query
  Strand MatID  Length  Eff.Length     E     S  W   T  X   E2      S2
   +1      0     3989 3,000,000,000   8.8e-05  200 10 n/a 34  0.00035  80
                                                          55  6.6e-06 100
   -1      0     3989 3,000,000,000   8.8e-05  200 10 n/a 34  0.00035  80
                                                          55  6.6e-06 100


Statistics:

  Database:  /gscmnt/131/analysis/compbio/twylie/20060201/chimp_6x/SC/chimp_6x_SC.fa
   Title:  /gscmnt/131/analysis/compbio/twylie/20060201/chimp_6x/SC/chimp_6x_SC.fa
   Posted:  1:40:49 PM CST Feb 1, 2006
   Created:  1:40:47 PM CST Feb 1, 2006
   Format:  XDF-1
   # of letters in database:  3,278,296,180  (Z = 300000000)
   # of sequences in database:  275,754
   # of database sequences satisfying E:  1
  No. of states in DFA:  23,160 (1629 KB)
  Total size of DFA:  1805 KB (3160 KB)
  Time to generate neighborhood:  0.01u 0.01s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  1
  Search cpu time:  218.65u 0.58s 219.23t  Elapsed: 00:03:40
  Total cpu time:  218.66u 0.59s 219.25t  Elapsed: 00:22:59
  Start:  Wed Feb  1 21:26:16 2006   End:  Wed Feb  1 21:29:56 2006
WARNINGS ISSUED:  1

EXIT CODE 0

BLASTN 2.0MP-WashU [10-May-2005] [linux24-i786-ILP32F64 2005-05-10T21:33:59]

Copyright (C) 1996-2005 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2005) http://blast.wustl.edu

Notice:  this program and its default parameter settings are optimized to find
nearly identical sequences rapidly.  To identify weak protein similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  gi|58743322|ref|NM_001011718.1| Homo sapiens X Kell blood group
    precursor-related family, member 7 (XKR7), mRNA
        (2929 letters; record 8)

Database:  /gscmnt/131/analysis/compbio/twylie/20060201/chimp_6x/SC/chimp_6x_SC
           .fa
           275,754 sequences; 3,278,296,180 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

Contig149                                                     7873  0.        3
Contig229222                                                  1142  2.1e-107  1
Contig103                                                      468  1.9e-35   2
Contig4                                                        292  1.5e-15   3


>Contig149
        Length = 5,348,272

  Minus Strand HSPs:

 Score = 7873 (2841.6 bits), Expect = 0., Sum P(3) = 0., Group = 1
 Identities = 1612/1629 (98%), Positives = 1612/1629 (98%), Strand = Minus / Plus

Query:    2910 TCCCTGGGACATTTTATCAGCCTAGCACTCTAGAACTCAATCTAGAACTAAGCCTGCTTC 2851
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483097 TCCCTGGGACATTTTATCAGCCTAGCACTCTAGAACTCAATCTAGAACTAAGCCTGCTTC 4483156

Query:    2850 TGGATCAGTTCCTCTGATAACTGTGCTAAAACCTCACCTGCACTTGAGCCCAGAGATCTT 2791
               |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483157 TGGATCAGGTCCTCTGATAACTGTGCTAAAACCTCACCTGCACTTGAGCCCAGAGATCTT 4483216

Query:    2790 TCCAGACATCTTATCTGCTGTGTTGAAGACCTGTATCTAGAAGCCACGTTCCAGGTGCAC 2731
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4483217 TCCAGACATCTTATCTGCTGTGTTGAAGACCTGTATCTAGAAGCCACGTTCCAGGTGCTC 4483276

Query:    2730 ATCTAGAACAAAAAATGGCTCCTTCAAACATTTCACCTGAGGTGTGTGGAACTTCATCCT 2671
               |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4483277 ATCTTGAACAAAAAATGGCTCCTTCAAACATTTCACCTGAGGTGTGTGGAACCTCATCCT 4483336

Query:    2670 TCACAGAGCCCACAACACAACAAGAGACGTCTCCTAAGGAGTTCATTCTTGTTCGCTATG 2611
               |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4483337 TCACAGAGCCAACAACACAACAAGAGACGTCACCTAAGGAGTTCATTCTTGTTCGCTATG 4483396

Query:    2610 CTCTGGATTGCAGGTTCCCCTCCCCCAAGTCTTCCACCCCTCCATGCTTCTGCCAGCCTA 2551
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483397 CTCTGGATTGCAGGTTCCCCTCCCCCAAGTCTTCCACCCCTCCATGCTTCTGCCAGCCTA 4483456

Query:    2550 GACCCCCCCCCCAGTTCTTTCTCCTATCCATCTCCAGCACTGCCAGCCCCCCACCCCAAC 2491
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483457 GACCCCCCCCCCAGTTCTTTCTCCTATCCATCTCCAGCACTGCCAGCCCCCCACCCCAAC 4483516

Query:    2490 ACCCTGCCCCACCCCAACTCCCTTCTTCAGCTCCCTCTTGCCCTGGCTCCAGGCCTCAGA 2431
               || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483517 ACTCTGCCCCACCCCAACTCCCTTCTTCAGCTCCCTCTTGCCCTGGCTCCAGGCCTCAGA 4483576

Query:    2430 TGCTACAGGAGCCACGCCATCCCTGTCCACACAATGCTCCAACCTCACCCCATCCCTTCC 2371
               |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||