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t/14-contained.t  view on Meta::CPAN

#!/usr/bin/perl
use strict;
use warnings;
use Test::More;

#use App::Cmd::Tester;
use App::Cmd::Tester::CaptureExternal;

use App::Dazz;

my $result = test_app( 'App::Dazz' => [qw(help contained)] );
like( $result->stdout, qr{contained}, 'descriptions' );

$result = test_app( 'App::Dazz' => [qw(contained)] );
like( $result->error, qr{need .+input file}, 'need infile' );

$result = test_app( 'App::Dazz' => [qw(contained t/1_4.pac.fasta t/not_exists)] );
like( $result->error, qr{doesn't exist}, 'infile not exists' );

SKIP: {
    skip "dazz and its deps not installed", 7
        unless IPC::Cmd::can_run('dazz')
            or IPC::Cmd::can_run('faops')
            or IPC::Cmd::can_run('fasta2DB')
            or IPC::Cmd::can_run('LAshow')
            or IPC::Cmd::can_run('ovlpr');

    $result = test_app('App::Dazz' => [ qw(contained t/1_4.anchor.fasta --prefix anchor -v -o stdout) ]);
    is((scalar grep {/^CMD/} grep {/\S/} split(/\n/, $result->stderr)), 3, 'stderr line count');
    is((scalar grep {/\S/} split(/\n/, $result->stdout)), 8, 'line count');
    unlike($result->stdout, qr{anchor576_1624}s, 'original names');
    like($result->stdout, qr{anchor_0\/1\/}s, 'renamed');

    $result = test_app('App::Dazz' => [ qw(contained t/contained.fasta -v -o stdout) ]);
    is((scalar grep {/^CMD/} grep {/\S/} split(/\n/, $result->stderr)), 3, 'stderr line count');
    is((scalar grep {/\S/} split(/\n/, $result->stdout)), 2, 'line count');
    like($result->stdout, qr{infile_0\/}s, 'renamed');
}

done_testing();