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share/schema/public-conversions.json  view on Meta::CPAN

{
  "schema_version": 1,
  "http_request_fields": {
    "input": ["data"],
    "output": ["derived_entity_overrides", "entities"],
    "options": [
      "default_vital_status",
      "levenshtein_weight",
      "max_lines_sql",
      "min_text_similarity_score",
      "ohdsi_db",
      "omop_tables",
      "search",
      "source_info",
      "test",
      "text_similarity_method",
      "username"
    ]
  },
  "conversions": {
    "bff2csv": {
      "source": "beacon",
      "target": "csv",
      "operation": "direct",
      "pipeline": ["bff2csv"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "bff2jsonf": {
      "source": "beacon",
      "target": "jsonf",
      "operation": "direct",
      "pipeline": ["bff2jsonf"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "bff2jsonld": {
      "source": "beacon",
      "target": "jsonld",
      "operation": "direct",
      "pipeline": ["bff2jsonld"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "bff2omop": {
      "source": "beacon",
      "target": "omop",
      "operation": "direct",
      "pipeline": ["bff2omop"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "bff2pxf": {
      "source": "beacon",
      "target": "pxf",
      "operation": "direct",
      "pipeline": ["bff2pxf"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "cbioportal2bff": {
      "source": "cbioportal",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["cbioportal2bff"],
      "resources": { "sqlite": true },
      "entities": { "default": ["individuals"], "supported": ["individuals", "biosamples", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": false,
      "http_enabled": false
    },
    "cbioportal2omop": {
      "source": "cbioportal",
      "target": "omop",
      "operation": "pipeline",
      "pipeline": ["cbioportal2bff", "bff2omop"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "cbioportal2pxf": {
      "source": "cbioportal",
      "target": "pxf",
      "operation": "pipeline",
      "pipeline": ["cbioportal2bff", "bff2pxf"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "cdiscodm2bff": {
      "source": "cdisc-odm",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["cdiscodm2bff"],
      "resources": { "sqlite": true },
      "entities": { "default": ["individuals"], "supported": ["individuals", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": false,
      "http_enabled": false
    },
    "cdiscodm2omop": {
      "source": "cdisc-odm",
      "target": "omop",
      "operation": "pipeline",
      "pipeline": ["cdiscodm2bff", "bff2omop"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "cdiscodm2pxf": {
      "source": "cdisc-odm",
      "target": "pxf",
      "operation": "pipeline",
      "pipeline": ["cdiscodm2bff", "bff2pxf"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "datasetjson2bff": {
      "source": "dataset-json",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["datasetjson2bff"],
      "resources": { "sqlite": false },
      "entities": { "default": ["individuals"], "supported": ["individuals", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": false,
      "http_enabled": false
    },
    "datasetjson2omop": {
      "source": "dataset-json",
      "target": "omop",
      "operation": "pipeline",
      "pipeline": ["datasetjson2bff", "bff2omop"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "datasetjson2pxf": {
      "source": "dataset-json",
      "target": "pxf",
      "operation": "pipeline",
      "pipeline": ["datasetjson2bff", "bff2pxf"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "datasetxml2bff": {
      "source": "dataset-xml",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["datasetxml2bff"],
      "resources": { "sqlite": false },
      "entities": { "default": ["individuals"], "supported": ["individuals", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": false,
      "http_enabled": false
    },
    "datasetxml2omop": {
      "source": "dataset-xml",
      "target": "omop",
      "operation": "pipeline",
      "pipeline": ["datasetxml2bff", "bff2omop"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "datasetxml2pxf": {
      "source": "dataset-xml",
      "target": "pxf",
      "operation": "pipeline",
      "pipeline": ["datasetxml2bff", "bff2pxf"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "fhir2bff": {
      "source": "fhir",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["fhir2bff"],
      "resources": { "sqlite": false },
      "entities": { "default": ["individuals"], "supported": ["individuals", "biosamples", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": false,
      "http_enabled": true
    },
    "fhir2omop": {
      "source": "fhir",
      "target": "omop",
      "operation": "pipeline",
      "pipeline": ["fhir2bff", "bff2omop"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "fhir2pxf": {
      "source": "fhir",
      "target": "pxf",
      "operation": "pipeline",
      "pipeline": ["fhir2bff", "bff2pxf"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "csv2bff": {
      "source": "csv",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["csv2bff"],
      "resources": { "sqlite": true },
      "entities": { "default": ["individuals"], "supported": ["individuals", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": false,
      "http_enabled": false
    },
    "csv2omop": {
      "source": "csv",
      "target": "omop",
      "operation": "pipeline",
      "pipeline": ["csv2bff", "bff2omop"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "csv2pxf": {
      "source": "csv",
      "target": "pxf",
      "operation": "pipeline",
      "pipeline": ["csv2bff", "bff2pxf"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "omop2bff": {
      "source": "omop",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["omop2bff"],
      "resources": { "sqlite": true },
      "entities": { "default": ["individuals"], "supported": ["individuals", "biosamples", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": true,
      "http_enabled": true
    },
    "omop2pxf": {
      "source": "omop",
      "target": "pxf",
      "operation": "pipeline",
      "pipeline": ["omop2bff", "bff2pxf"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "openehr2bff": {
      "source": "openehr",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["openehr2bff"],
      "resources": { "sqlite": false },
      "entities": { "default": ["individuals"], "supported": ["individuals", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": false,
      "http_enabled": true
    },
    "openehr2pxf": {
      "source": "openehr",
      "target": "pxf",
      "operation": "pipeline",
      "pipeline": ["openehr2bff", "bff2pxf"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "pxf2bff": {
      "source": "pxf",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["pxf2bff"],
      "resources": { "sqlite": true },
      "entities": { "default": ["individuals"], "supported": ["individuals", "biosamples", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": false,
      "http_enabled": true
    },
    "pxf2csv": {
      "source": "pxf",
      "target": "csv",
      "operation": "direct",
      "pipeline": ["pxf2csv"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "pxf2jsonf": {
      "source": "pxf",
      "target": "jsonf",
      "operation": "direct",
      "pipeline": ["pxf2jsonf"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "pxf2jsonld": {
      "source": "pxf",
      "target": "jsonld",
      "operation": "direct",
      "pipeline": ["pxf2jsonld"],
      "resources": { "sqlite": false },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "pxf2omop": {
      "source": "pxf",
      "target": "omop",
      "operation": "pipeline",
      "pipeline": ["pxf2bff", "bff2omop"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": true
    },
    "redcap2bff": {
      "source": "redcap",
      "target": "beacon",
      "operation": "bundle",
      "pipeline": ["redcap2bff"],
      "resources": { "sqlite": true },
      "entities": { "default": ["individuals"], "supported": ["individuals", "datasets", "cohorts"], "primary": "individuals" },
      "streaming": false,
      "http_enabled": false
    },
    "redcap2omop": {
      "source": "redcap",
      "target": "omop",
      "operation": "pipeline",
      "pipeline": ["redcap2bff", "bff2omop"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    },
    "redcap2pxf": {
      "source": "redcap",
      "target": "pxf",
      "operation": "pipeline",
      "pipeline": ["redcap2bff", "bff2pxf"],
      "resources": { "sqlite": true },
      "entities": { "default": [], "supported": [], "primary": null },
      "streaming": false,
      "http_enabled": false
    }
  }
}