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share/clarid-codebook.yaml  view on Meta::CPAN

        tax_code:   MAB       # Mammalia | Artiodactyla     | Bovidae
      Chicken:
        code:       GalGal
        stub_code:  "0C"
        label:      "Gallus gallus"
        id:         "NCBITaxon:9031"
        tax_code:   AGP       # Aves      | Galliformes      | Phasianidae
      Rabbit:
        code:       OryCun
        stub_code:  "0D"
        label:      "Oryctolagus cuniculus"
        id:         "NCBITaxon:9986"
        tax_code:   MLL       # Mammalia | Lagomorpha       | Leporidae
      RhesusMacaque:
        code:       MacMul
        stub_code:  "0E"
        label:      "Macaca mulatta"
        id:         "NCBITaxon:9544"
        tax_code:   MPC       # Mammalia | Primates         | Cercopithecidae
      CynomolgusMacaque:
        code:       MacFas
        stub_code:  "0F"
        label:      "Macaca fascicularis"
        id:         "NCBITaxon:9543"
        tax_code:   MPC       # Mammalia | Primates         | Cercopithecidae
      CommonMarmoset:
        code:       CalJac
        stub_code:  "0G"
        label:      "Callithrix jacchus"
        id:         "NCBITaxon:9483"
        tax_code:   MCP       # Mammalia | Primates         | Callitrichidae
      GuineaPig:
        code:       CavPor
        stub_code:  "0H"
        label:      "Cavia porcellus"
        id:         "NCBITaxon:10141"
        tax_code:   MRC       # Mammalia | Rodentia         | Caviidae
      GoldenHamster:
        code:       MesAur
        stub_code:  "0I"
        label:      "Mesocricetus auratus"
        id:         "NCBITaxon:10036"
        tax_code:   MRC       # Mammalia | Rodentia         | Cricetidae
      AfricanClawedFrog:
        code:       XenLae
        stub_code:  "0J"
        label:      "Xenopus laevis"
        id:         "NCBITaxon:8355"
        tax_code:   AAP       # Amphibia   | Anura            | Pipidae
      Ferret:
        code:       MusPut
        stub_code:  "0K"
        label:      "Mustela putorius furo"
        id:         "NCBITaxon:9612"
        tax_code:   MCM       # Mammalia   | Carnivora        | Mustelidae
      NakedMoleRat:
        code:       HetGla
        stub_code:  "0L"
        label:      "Heterocephalus glaber"
        id:         "NCBITaxon:314479"
        tax_code:   MRB       # Mammalia   | Rodentia         | Bathyergidae
      Opossum:
        code:       MonDom
        stub_code:  "0M"
        label:      "Monodelphis domestica"
        id:         "NCBITaxon:13710"
        tax_code:   MDD       # Mammalia   | Didelphimorphia  | Didelphidae
  
    tissue:
      Liver:
        code:       LIV
        stub_code:  L
        label:      "Liver"
        id:         "UBERON:0002107"
      Lung:
        code:       LUN
        stub_code:  LU
        label:      "Lung"
        id:         "UBERON:0002048"
      Kidney:
        code:       KID
        stub_code:  K
        label:      "Kidney"
        id:         "UBERON:0002113"
      Blood:
        code:       BLO
        stub_code:  B
        label:      "Blood"
        id:         "UBERON:0000178"
      PeripheralBlood:
        code:       PBLO
        stub_code:  PB
        label:      "Peripheral Blood"
        id:         "BTO:0000553"
      Tumor:
        code:       TUM
        stub_code:  T
        label:      "Neoplasm"
        id:         "NCIT:C3262"
      Brain:
        code:       BRN
        stub_code:  N
        label:      "Brain"
        id:         "UBERON:0000955"
      Heart:
        code:       HRT
        stub_code:  H
        label:      "Heart"
        id:         "UBERON:0000948"
      Spleen:
        code:       SPL
        stub_code:  S
        label:      "Spleen"
        id:         "UBERON:0002106"
      Skin:
        code:       SKN
        stub_code:  I
        label:      "Skin"
        id:         "UBERON:0002097"
      Pancreas:
        code:       PNC