view release on metacpan or  search on metacpan

share/circos.conf.tt2  view on Meta::CPAN

<image>
dir*   = [% dir %]/Circos/[% id %]
file*  = [% id %].circos.png
background*     = white

# radius of inscribed circle in image
radius         = 1500p
background     = white

# by default angle=0 is at 3 o'clock position
angle_offset   = -90

24bit             = yes
auto_alpha_colors = yes
auto_alpha_steps  = 5
</image>

karyotype = karyotype.[% id %].txt
chromosomes_units = 1000

chromosomes_display_default = yes

<links>

<link>
file          = [% id %].link3.txt
radius        = 0.88r
bezier_radius = 0.2r
color         = dgreen
thickness     = 3
ribbon        = yes
stroke_color  = dgreen
stroke_thickness = 2
</link>

<link>
file          = [% id %].link2.txt
radius        = 0.88r
bezier_radius = 0.1r
color         = dorange
thickness     = 3
ribbon        = yes
stroke_color  = dorange
stroke_thickness = 2
</link>

</links>

<highlights>

<highlight>
file = highlight.features.[% id %].txt
r0 = 0.95r
r1 = 0.98r
</highlight>

<highlight>
file = highlight.repeats.[% id %].txt
r0 = 0.93r
r1 = 0.98r
</highlight>

<highlight>
file = [% id %].linkN.txt
r0 = 0.89r
r1 = 0.92r
stroke_thickness = 2
stroke_color = grey