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[Term]
id: MI:0591
name: experiment description
def: "The experimental condition text description, should contain information about the organisms hosting the interaction." [PMID:14755292]
subset: PSI-MI slim
synonym: "experiment descripti" EXACT PSI-MI-short []
is_a: MI:0665 ! experiment attibute name

[Term]
id: MI:0592
name: ipfam
def: "Web resource that allows the investigation of protein interactions in the Protein Data Bank structures at the level of Pfam domains and amino acid residues. iPfam is available on the Web for browsing at.\nhttp://www.sanger.ac.uk/Software/Pfam/i...
subset: PSI-MI slim
is_a: MI:0447 ! feature database

[Term]
id: MI:0593
name: translocation
def: "Xref pointing to a GO process term describing the start and end location of a migrating molecule, for instance see GO:0006611, 'protein-nucleus export'." [PMID:14681407]
subset: PSI-MI slim
is_a: MI:0353 ! cross-reference type

[Term]
id: MI:0594
name: translocation start
def: "Xref pointing to a GO compartment term describing the start location of a migrating molecule." [PMID:14681407]
subset: PSI-MI slim
is_a: MI:0593 ! translocation

[Term]
id: MI:0595
name: translocation end
def: "Xref pointing to a GO compartment term describing the end location of a migrating molecule." [PMID:14755292]
subset: PSI-MI slim
is_a: MI:0593 ! translocation

[Term]
id: MI:0596
name: experimental form description
def: "Free text description of all the tags and artificial process undergone by a molecule during an experiment." [PMID:14755292]
subset: PSI-MI slim
synonym: "experimental form de" EXACT PSI-MI-short []
is_a: MI:0666 ! participant attribute name

[Term]
id: MI:0597
name: feature description
def: "The feature text description may include information about the feature detection method." [PMID:14755292]
subset: PSI-MI slim
is_a: MI:0668 ! feature attribute name

[Term]
id: MI:0598
name: feature constraint
def: "The feature constraint free text will specificity whether a biological feature is shown to be possible (just observed) or required (experimentally demonstrated to be necessary for an interaction)." [PMID:14755292]
subset: PSI-MI slim
is_a: MI:0668 ! feature attribute name

[Term]
id: MI:0599
name: figure legend
def: "Text pointing to a specific paper figure legend where the experimental evidences for an interaction are to be found." [PMID:14755292]
subset: PSI-MI slim
is_a: MI:0664 ! interaction attribute name
is_a: MI:0665 ! experiment attibute name

[Term]
id: MI:0600
name: conditional synthetic lethal nutrition-sensitivity
def: "Two silent mutations show a nutrition sensitive lethal phenotype when they co-occur on the same cell.\nOBSOLETE: remap to CV intraction type 'synthetic interaction' MI:0794 and external CV for phenotype description." [PMID:15608217]
subset: PSI-MI slim
synonym: "nutrition synt letal" EXACT PSI-MI-short []
is_obsolete: true

[Term]
id: MI:0601
name: sequence ontology
def: "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. SO provides a common set of terms and definitions that will facilitate the exchange, analysis and management of genomic data." [PMID:1589287...
subset: PSI-MI slim
synonym: "so" EXACT PSI-MI-short []
xref: id-validation-regexp:\"SO\:[0-9\]\{7}\"
is_a: MI:0447 ! feature database
is_a: MI:0473 ! participant database

[Term]
id: MI:0602
name: chemical footprinting
def: "Binding sites are identified by altered reactivity of a complex to a chemical treatment compared to the unbound molecules. Residues in close contact with the binding partner are protected from cleavage by the enzyme. When these chemicals are ad...
subset: PSI-MI slim
synonym: "chemical footprint" EXACT PSI-MI-short []
is_a: MI:0417 ! footprinting

[Term]
id: MI:0603
name: dimethylsulphate footprinting
def: "Dimethylsulphate (DMS) is the most commonly used chemical to study DNA-protein interactions. DMS induces methylation of guanine residues so DNA interaction with protein binding to AT rich sequences or to the phosphate backbone may be not detect...
subset: PSI-MI slim
synonym: "dms footprinting" EXACT PSI-MI-short []
is_a: MI:0602 ! chemical footprinting

[Term]
id: MI:0604
name: potassium permanganate footprinting
def: "Potassium permanganate bind to single-stranded pyrimidine residues, it is commonly used to detect promoters opening regions in vivo. KMnO4 treatment of cells, followed by treatment with piperidine, followed by either PCR and/or acrylamide gel e...
subset: PSI-MI slim
synonym: "k-mn-04 footprinting" EXACT PSI-MI-short []
is_a: MI:0602 ! chemical footprinting

[Term]
id: MI:0605
name: enzymatic footprinting
def: "Binding sites are identified by altered reactivity of a complex to an enzymatic probe compared to the unbound molecules. Residues in close contact with the binding partner are protected from cleavage by the enzyme. When these enzymes are admini...
subset: PSI-MI slim
synonym: "enzymatic footprint" EXACT PSI-MI-short []
is_a: MI:0417 ! footprinting

[Term]
id: MI:0606
name: DNase I footprinting
def: "Deoxyribonuclease I (DNase I) do not have high specificity for given sequences or residues, thus footprinting with DNase I permits the exact delineation of the protein-DNA binding site. Moreover DNase I, can be used for in vivo footprinting by ...
subset: PSI-MI slim
synonym: "dnase 1 footprinting" EXACT PSI-MI-short []