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lib/BioSAILs/Utils/Plugin.pm  view on Meta::CPAN

package BioSAILs::Utils::Plugin;

use MooseX::App::Role;
use namespace::autoclean;

use IO::File;
use File::Path qw(make_path remove_tree);

use IPC::Cmd;
use Cwd qw(getcwd);
use Try::Tiny;
use List::Util qw(uniq);

with 'MooseX::Object::Pluggable';

=head1 HPC::Runner::Command::Utils::Plugin

Take care of all file operations

=cut

=head2 Attributes

=cut

=head3 plugins

Load plugins that are used both by the submitter and executor such as logging pluggins

=cut

option 'plugins' => (
    traits   => ['Array'],
    is            => 'rw',
    isa           => 'ArrayRef[Str]',
    documentation => 'Load aplication plugins',
    cmd_split     => qr/,/,
    required      => 0,
    default       => sub { [] },
    handles   => {
        has_plugins   => 'count',
        join_plugins  => 'join',
    },
);

option 'plugins_opts' => (
    is            => 'rw',
    isa           => 'HashRef',
    documentation => 'Options for application plugins',
    required      => 0,
    default       => sub { {} },
);


=head2 Subroutines

=cut

=head3 gen_load_plugins

=cut

sub gen_load_plugins {
    my $self = shift;