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    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    },
    {
    name "Echinoderm Mitochondrial; Flatworm Mitochondrial" ,
    name "SGC8" ,
    id 9 ,
    ncbieaa  "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
    sncbieaa "-----------------------------------M---------------M------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    },
    {
    name "Euplotid Nuclear" ,
    name "SGC9" ,
    id 10 ,
    ncbieaa  "FFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
    sncbieaa "-----------------------------------M----------------------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    },
    {
    name "Bacterial and Plant Plastid" ,
    id 11 ,
    ncbieaa  "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
    sncbieaa "---M---------------M------------MMMM---------------M------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    },
    {
    name "Alternative Yeast Nuclear" ,
    id 12 ,
    ncbieaa  "FFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
    sncbieaa "-------------------M---------------M----------------------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    },
    {
    name "Ascidian Mitochondrial" ,
    id 13 ,
    ncbieaa  "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG",
    sncbieaa "---M------------------------------MM---------------M------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    },
    {
    name "Alternative Flatworm Mitochondrial" ,
    id 14 ,
    ncbieaa  "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
    sncbieaa "-----------------------------------M----------------------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    } ,
    {
    name "Blepharisma Macronuclear" ,
    id 15 ,
    ncbieaa  "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
    sncbieaa "-----------------------------------M----------------------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    } ,
    {
    name "Chlorophycean Mitochondrial" ,
    id 16 ,
    ncbieaa  "FFLLSSSSYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
    sncbieaa "-----------------------------------M----------------------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    } ,
    {
    name "Trematode Mitochondrial" ,
    id 21 ,
    ncbieaa  "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
    sncbieaa "-----------------------------------M---------------M------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    } ,
    {
    name "Scenedesmus obliquus Mitochondrial" ,
    id 22 ,
    ncbieaa  "FFLLSS*SYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
    sncbieaa "-----------------------------------M----------------------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    } ,
    {
    name "Thraustochytrium Mitochondrial" ,
    id 23 ,
    ncbieaa  "FF*LSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
    sncbieaa "--------------------------------M--M---------------M------------"
    -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
    -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
    -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
    }

=head1 AUTHOR

Kevin Galinsky, <kgalinsky plus cpan at gmail dot com>

=cut

# keep translation tables in the __DATA__ section
__DATA__

{
name "Standard; SGC0" ,
id 1 ,
ncbieaa  "X**ACDEFGHIKLLMNPQRRSSTVWYBJJZ",
sncbieaa "M-----------------------------",
-- Base1  HTTGTGGTGCAACYAACCCMATAGTTGHMS"
-- Base2  TARCGAATGATATTTACAGGGCCTGAMTTA"

lib/Bio/Translator/Table.pm  view on Meta::CPAN

sncbieaa "M----------------------------",
-- Base1  ATGTGGTGCAACYAACYCMATAGTTGHMB"
-- Base2  TGCGAATGATATTTACAGGGCCTGAMTTA"
-- Base3  GANYYRYNYHRNRGYNRNRYNNNGYYAHR"
}
{
name "Echinoderm Mitochondrial; Flatworm Mitochondrial; SGC8" ,
id 9 ,
ncbieaa  "X*ACDEFGHIKLLMNPQRSSTVWYBJJZ",
sncbieaa "M---------------------------",
-- Base1  RTGTGGTGCAACYAACCCATAGTTGHMS"
-- Base2  TACGAATGATATTTACAGGCCTGAMTTA"
-- Base3  GRNYYRYNYHGNRGHNRNNNNNRYYAHR"
}
{
name "Euplotid Nuclear; SGC9" ,
id 10 ,
ncbieaa  "X*ACDEFGHIKLLMNPQRRSSTVWYBJJZ",
sncbieaa "M----------------------------",
-- Base1  ATGTGGTGCAACYAACCCMATAGTTGHMS"
-- Base2  TACGAATGATATTTACAGGGCCTGAMTTA"
-- Base3  GRNHYRYNYHRNRGYNRNRYNNNGYYAHR"
}
{
name "Bacterial and Plant Plastid" ,
id 11 ,
ncbieaa  "XX**ACDEFGHIKLLMNPQRRSSTVWYBJJZ",
sncbieaa "MM-----------------------------",
-- Base1  ANTTGTGGTGCAACYAACCCMATAGTTGHMS"
-- Base2  TTARCGAATGATATTTACAGGGCCTGAMTTA"
-- Base3  NGRANYYRYNYHRNRGYNRNRYNNNGYYAHR"
}
{
name "Alternative Yeast Nuclear" ,
id 12 ,
ncbieaa  "X**ACDEFGHIKLLLMNPQRRSSSTVWYBJJZ",
sncbieaa "M-------------------------------",
-- Base1  MTTGTGGTGCAACTYAACCCMACTAGTTGHMS"
-- Base2  TARCGAATGATATTTTACAGGGTCCTGAMTTA"
-- Base3  GRANYYRYNYHRHRAGYNRNRYGNNNGYYAHR"
}
{
name "Ascidian Mitochondrial" ,
id 13 ,
ncbieaa  "XX*ACDEFGGHIKLLMNPQRSSTVWYBJZ",
sncbieaa "MM---------------------------",
-- Base1  ADTGTGGTGRCAACYAACCCATAGTTGMS"
-- Base2  TTACGAATGGATATTTACAGGCCTGAMTA"
-- Base3  RGRNYYRYNRYYRNRRYNRNYNNNRYYYR"
}
{
name "Alternative Flatworm Mitochondrial" ,
id 14 ,
ncbieaa  "X*ACDEFGHIKLLMNPQRSSTVWYBJJZ",
sncbieaa "M---------------------------",
-- Base1  ATGTGGTGCAACYAACCCATAGTTGHMS"
-- Base2  TACGAATGATATTTACAGGCCTGAMTTA"
-- Base3  GGNYYRYNYHGNRGHNRNNNNNRHYAHR"
}
{
name "Blepharisma Macronuclear" ,
id 15 ,
ncbieaa  "X*ACDEFGHIKLLMNPQQRRSSTVWYBJJZZ",
sncbieaa "M------------------------------",
-- Base1  ATGTGGTGCAACYAACCYCMATAGTTGHMBS"
-- Base2  TRCGAATGATATTTACAAGGGCCTGAMTTAA"
-- Base3  GANYYRYNYHRNRGYNRGNRYNNNGYYAHGR"
}
{
name "Chlorophycean Mitochondrial" ,
id 16 ,
ncbieaa  "X*ACDEFGHIKLLLMNPQRRSSTVWYBJJZ",
sncbieaa "M-----------------------------",
-- Base1  ATGTGGTGCAACTYAACCCMATAGTTGHMS"
-- Base2  TRCGAATGATATWTTACAGGGCCTGAMTTA"
-- Base3  GANYYRYNYHRNGRGYNRNRYNNNGYYAHR"
}
{
name "Trematode Mitochondrial" ,
id 21 ,
ncbieaa  "X*ACDEFGHIKLLMNPQRSSTVWYBJZ",
sncbieaa "M--------------------------",
-- Base1  RTGTGGTGCAACYAACCCATAGTTGMS"
-- Base2  TACGAATGATATTTACAGGCCTGAMTA"
-- Base3  GRNYYRYNYYGNRRHNRNNNNNRYYYR"
}
{
name "Scenedesmus obliquus Mitochondrial" ,
id 22 ,
ncbieaa  "X*ACDEFGHIKLLLMNPQRRSSTVWYBJJZ",
sncbieaa "M-----------------------------",
-- Base1  ATGTGGTGCAACTYAACCCMATAGTTGHMS"
-- Base2  TVCGAATGATATWTTACAGGGCCTGAMTTA"
-- Base3  GANYYRYNYHRNGRGYNRNRYBNNGYYAHR"
}
{
name "Thraustochytrium Mitochondrial" ,
id 23 ,
ncbieaa  "XX**ACDEFGHIKLLMNPQRRSSTVWYBJZ",
sncbieaa "MM----------------------------",
-- Base1  ARTTGTGGTGCAACYAACCCMATAGTTGMS"
-- Base2  TTADCGAATGATATTTACAGGGCCTGAMTA"
-- Base3  KGRANYYRYNYHRNGGYNRNRYNNNGYYHR"
}