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lib/Bio/Tools/Run/QCons.pm  view on Meta::CPAN

package Bio::Tools::Run::QCons;
{
  $Bio::Tools::Run::QCons::VERSION = '0.112881';
}

# ABSTRACT: Run Qcons to analyze protein-protein contacts

use Mouse;
use autodie;
use namespace::autoclean;
use Capture::Tiny 'capture_merged';
use Bio::Tools::Run::QCons::Types 'Executable';

has 'program_name' => (
    is      => 'ro',
    isa     => 'Executable',
    default => 'Qcontacts',
);

has file => (
    is  => 'ro',
    isa => 'Str',
    required => 1,
);

has chains => (
    is         => 'ro',
    isa        => 'ArrayRef[Str]',
    required   => 1,
);

has probe_radius => (
    is      => 'ro',
    isa     => 'Num',
    default => 1.4,
);

has _result => ( is => 'ro', lazy_build => 1 );

has [qw(residue_contacts atom_contacts)] => (
    is => 'ro',
    lazy_build => 1,
);

sub _build_residue_contacts {
    return $_[0]->_result->{by_residue};
}

sub _build_atom_contacts {
    return $_[0]->_result->{by_atom};
}

has verbose => (
    is => 'rw',
    isa => 'Bool',
    default => 0,
);

has _temp_dir => (
    is => 'ro',
    isa => 'File::Temp::Dir',
    lazy_build => 1,
);

sub _build__temp_dir {
    require File::Temp;

    return File::Temp->newdir();
}