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lib/Bio/Tools/Run/BlastPlus/Config.pm  view on Meta::CPAN

blp|query
blp|out
blp|evalue
blp|word_size
blp|gapopen
blp|gapextend
blp|xdrop_ungap
blp|xdrop_gap
blp|xdrop_gap_final
blp|searchsp
blp|seg
blp|soft_masking
blp|matrix
blp|threshold
blp|culling_limit
blp|best_hit_overhang
blp|best_hit_score_edge
blp|window_size
blp|query_loc
blp|outfmt
blp|num_descriptions
blp|num_alignments
blp|max_target_seqs
blp|num_threads
blp|comp_based_stats
psi|import_search_strategy
psi|export_search_strategy
psi|db
psi|dbsize
psi|gilist
psi|negative_gilist
psi|entrez_query
psi|subject
psi|subject_loc
psi|query
psi|out
psi|evalue
psi|word_size
psi|gapopen
psi|gapextend
psi|xdrop_ungap
psi|xdrop_gap
psi|xdrop_gap_final
psi|searchsp
psi|seg
psi|soft_masking
psi|matrix
psi|threshold
psi|culling_limit
psi|best_hit_overhang
psi|best_hit_score_edge
psi|window_size
psi|query_loc
psi|outfmt
psi|num_descriptions
psi|num_alignments
psi|max_target_seqs
psi|num_threads
psi|comp_based_stats
psi|gap_trigger
psi|num_iterations
psi|out_pssm
psi|out_ascii_pssm
psi|in_msa
psi|in_pssm
psi|pseudocount
psi|inclusion_ethresh
psi|phi_pattern
rpst|import_search_strategy
rpst|export_search_strategy
rpst|db
rpst|dbsize
rpst|gilist
rpst|negative_gilist
rpst|entrez_query
rpst|query
rpst|out
rpst|evalue
rpst|word_size
rpst|xdrop_ungap
rpst|xdrop_gap
rpst|xdrop_gap_final
rpst|searchsp
rpst|query_gencode
rpst|seg
rpst|soft_masking
rpst|window_size
rpst|query_loc
rpst|strand
rpst|outfmt
rpst|num_descriptions
rpst|num_alignments
rpst|max_target_seqs
rpst|num_threads
mak|in
mak|dbtype
mak|title
mak|mask_data
mak|out
mak|max_file_sz
mak|taxid
mak|taxid_map
mak|logfile
dba|gi_file_in
dba|gi_file_out
dba|db
dba|dbtype
dba|title
dba|gilist
dba|out
dba|dblist
dba|num_volumes
dba|logfile
tbx|import_search_strategy
tbx|export_search_strategy
tbx|db
tbx|dbsize
tbx|gilist
tbx|negative_gilist
tbx|entrez_query
tbx|subject