BioPerl-Run

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lib/Bio/Tools/Run/AnalysisFactory/soap.pm  view on Meta::CPAN


All public methods are documented in the interface module
C<Bio::Factory::AnalysisI>.

=head1 FEEDBACK

=head2 Mailing Lists

User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list.  Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

=head2 Support 

Please direct usage questions or support issues to the mailing list:

I<bioperl-l@bioperl.org>

rather than to the module maintainer directly. Many experienced and 
reponsive experts will be able look at the problem and quickly 
address it. Please include a thorough description of the problem 
with code and data examples if at all possible.

=head2 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:

  http://redmine.open-bio.org/projects/bioperl/

=head1 AUTHOR

Martin Senger (martin.senger@gmail.com)

=head1 COPYRIGHT

Copyright (c) 2003, Martin Senger and EMBL-EBI.
All Rights Reserved.

This module is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.

=head1 DISCLAIMER

This software is provided "as is" without warranty of any kind.

=head1 SEE ALSO

=over

=item *

http://www.ebi.ac.uk/soaplab/Perl_Client.html

=back

=head1 BUGS AND LIMITATIONS

None known at the time of writing this.

=head1 APPENDIX

The main documentation details are in
C<Bio::Factory::AnalysisI>.

=cut

# Let the code begin...

package Bio::Tools::Run::AnalysisFactory::soap;
use vars qw(@ISA $Revision $DEFAULT_LOCATION @DEFAULT_DIR_SERVICE);
use strict;

use Bio::Tools::Run::AnalysisFactory;
use Bio::Tools::Run::Analysis;
use SOAP::Lite
    on_fault => sub {
	my $soap = shift;
	my $res = shift;
	my $msg =
	    ref $res ?
		"--- SOAP FAULT ---\n" .
		'faultcode:   ' . $res->faultcode . "\n" .
		'faultstring: ' . Bio::Tools::Run::AnalysisFactory::soap::_clean_msg ($res->faultstring)
	      : "--- TRANSPORT ERROR ---\n" . $soap->transport->status . "\n$res\n";
        Bio::Tools::Run::AnalysisFactory::soap->throw ($msg);
    }
;

@ISA = qw(Bio::Tools::Run::AnalysisFactory);

BEGIN {
    $Revision = q[$Id$];

    # where to go...
    $DEFAULT_LOCATION = 'http://www.ebi.ac.uk/soaplab/services';

    # ...and what to find there
    # (this is a list of service names available from the given location;
    #  those that do not exist are ignored; if none exists then only
    #  location - without any service name appended - is used)
    @DEFAULT_DIR_SERVICE = ('AnalysisFactory', 'GowlabFactory');
}

# -----------------------------------------------------------------------------

=head2 _initialize

 Usage   : my $factory = Bio::Tools::Run::AnalysisFactory->new(@args);
           (_initialize is internally called from the 'new()' method)
 Returns : nothing interesting
 Args    : This module recognises and uses following arguments:
             -location
             -httpproxy
             -soap
	   Additionally, the main module Bio::Tools::Run::AnalysisFactory
           recognises also:



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