Bio-EUtilities
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lib/Bio/Tools/EUtilities/Info/LinkInfo.pm view on Meta::CPAN
}
sub get_db {
return shift->get_database;
}
sub get_dbto {
return shift->get_database;
}
sub get_dbfrom { return shift->{'_dbfrom'} }
sub get_link_name {
my $self = shift;
if ($self->eutil eq 'elink') {
return $self->{'_linkname'}
} else {
return $self->{'_name'}
}
}
sub get_link_description { return shift->{'_description'} }
sub get_link_menu_name {
my $self = shift;
return $self->eutil eq 'elink' ? $self->{'_menutag'} : $self->{'_menu'};
}
sub get_priority { return shift->{'_priority'} }
sub get_html_tag { return shift->{'_htmltag'} }
sub get_url { return shift->{'_url'} }
# private method
sub _add_data {
my ($self, $simple) = @_;
map { $self->{'_'.lc $_} = $simple->{$_} unless ref $simple->{$_}} keys %$simple;
}
sub to_string {
my $self = shift;
my $level = shift || 0;
my $pad = 20 - $level;
# order method name
my %tags = (1 => ['get_link_name' => 'Link Name'],
2 => ['get_link_description' => 'Description'],
3 => ['get_dbfrom' => 'DB From'],
4 => ['get_dbto' => 'DB To'],
5 => ['get_link_menu_name' => 'Menu Name'],
6 => ['get_priority' => 'Priority'],
7 => ['get_html_tag' => 'HTML Tag'],
8 => ['get_url' => 'URL'],
);
my $string = '';
for my $tag (sort {$a <=> $b} keys %tags) {
my ($m, $nm) = ($tags{$tag}->[0], $tags{$tag}->[1]);
my $content = $self->$m();
next unless $content;
$string .= sprintf("%-*s%-*s%s\n",
$level, '',
$pad, $nm,
$self->_text_wrap(':',
' ' x ($pad).':',
$content ));
}
return $string;
}
1;
__END__
=pod
=encoding UTF-8
=head1 NAME
Bio::Tools::EUtilities::Info::LinkInfo - Class for storing einfo link data.
=head1 VERSION
version 1.77
=head1 SYNOPSIS
## should not create instance directly; Bio::Tools::EUtilities does this ##
# get a LinkInfo object using Bio:Tools::EUtilities
print "Link name: ",$link->get_link_name,"\n";
print "Link name: ",$link->get_link_menu_name,"\n";
print "Link desc: ",$link->get_link_description,"\n";
print "DBFrom: ",$link->get_dbfrom,"\n"; # database linked from
print "DBTo: ",$link->get_dbto,"\n"; # database linked to
=head1 DESCRIPTION
This class handles data output (XML) from both einfo and elink, and centers on
describing data that either describes how NCBI databases are linked together
via link names, or how databases are linked to outside databases (LinkOut).
Further documentation for Link and Field subclass methods is included below.
For more information on einfo see:
http://eutils.ncbi.nlm.nih.gov/entrez/query/static/einfo_help.html
=head2 new
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