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lib/Bio/Palantir/Parser/Root.pm  view on Meta::CPAN

package Bio::Palantir::Parser::Root;
# ABSTRACT: BiosynML DTD-derived internal class
$Bio::Palantir::Parser::Root::VERSION = '0.211420';
use Moose;
use namespace::autoclean;

# AUTOGENERATED CODE! DO NOT MODIFY THIS FILE!

use XML::Bare qw(forcearray);
use POSIX;

use aliased 'Bio::Palantir::Parser::Cluster';
use aliased 'Bio::Palantir::Parser::Gene';
use aliased 'Bio::Palantir::Parser::Domain';
use aliased 'Bio::Palantir::Parser::Motif';

use aliased 'Bio::Palantir::Roles::Modulable::Module';

# private attributes
has '_root' => (
    is       => 'ro',
    isa      => 'HashRef',
    required => 1,
);

has 'module_delineation' => (
    is      => 'ro',
    isa     => 'Str',
);



# public array(s) of composed objects


has 'clusters' => (
    traits   => ['Array'],
    is       => 'ro',
    isa      => 'ArrayRef[Bio::Palantir::Parser::Cluster]',
    writer   => '_set_clusters',
    init_arg => undef,
    handles  => {
         count_clusters => 'count',
           all_clusters => 'elements',
           get_cluster  => 'get',
          next_cluster  => 'shift',        
    },
);


## no critic (ProhibitUnusedPrivateSubroutines)


## use critic



has 'genes' => (
    traits   => ['Array'],
    is       => 'ro',
    isa      => 'ArrayRef[Bio::Palantir::Parser::Gene]',
    writer   => '_set_genes',
    handles  => {
         count_genes => 'count',
           all_genes => 'elements',