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lib/Bio/KBase/CDMI/Service.pm  view on Meta::CPAN

package Bio::KBase::CDMI::Service;

use Data::Dumper;
use Moose;

extends 'RPC::Any::Server::JSONRPC::PSGI';

has 'instance_dispatch' => (is => 'ro', isa => 'HashRef');
has 'user_auth' => (is => 'ro', isa => 'UserAuth');
has 'valid_methods' => (is => 'ro', isa => 'HashRef', lazy => 1,
			builder => '_build_valid_methods');

our $CallContext;

our %return_counts = (
        'fids_to_annotations' => 1,
        'fids_to_functions' => 1,
        'fids_to_literature' => 1,
        'fids_to_protein_families' => 1,
        'fids_to_roles' => 1,
        'fids_to_subsystems' => 1,
        'fids_to_co_occurring_fids' => 1,
        'fids_to_locations' => 1,
        'locations_to_fids' => 1,
        'alleles_to_bp_locs' => 1,
        'region_to_fids' => 1,
        'region_to_alleles' => 1,
        'alleles_to_traits' => 1,
        'traits_to_alleles' => 1,
        'ous_with_trait' => 1,
        'locations_to_dna_sequences' => 1,
        'proteins_to_fids' => 1,
        'proteins_to_protein_families' => 1,
        'proteins_to_literature' => 1,
        'proteins_to_functions' => 1,
        'proteins_to_roles' => 1,
        'roles_to_proteins' => 1,
        'roles_to_subsystems' => 1,
        'roles_to_protein_families' => 1,
        'fids_to_coexpressed_fids' => 1,
        'protein_families_to_fids' => 1,
        'protein_families_to_proteins' => 1,
        'protein_families_to_functions' => 1,
        'protein_families_to_co_occurring_families' => 1,
        'co_occurrence_evidence' => 1,
        'contigs_to_sequences' => 1,
        'contigs_to_lengths' => 1,
        'contigs_to_md5s' => 1,
        'md5s_to_genomes' => 1,
        'genomes_to_md5s' => 1,
        'genomes_to_contigs' => 1,
        'genomes_to_fids' => 1,
        'genomes_to_taxonomies' => 1,
        'genomes_to_subsystems' => 1,
        'subsystems_to_genomes' => 1,
        'subsystems_to_fids' => 1,
        'subsystems_to_roles' => 1,
        'subsystems_to_spreadsheets' => 1,
        'all_roles_used_in_models' => 1,
        'complexes_to_complex_data' => 1,
        'genomes_to_genome_data' => 1,
        'fids_to_regulon_data' => 1,
        'regulons_to_fids' => 1,
        'fids_to_feature_data' => 1,
        'equiv_sequence_assertions' => 1,
        'fids_to_atomic_regulons' => 1,
        'atomic_regulons_to_fids' => 1,
        'fids_to_protein_sequences' => 1,
        'fids_to_proteins' => 1,
        'fids_to_dna_sequences' => 1,