Bio-Graphics
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section which is referenced when no section is passed to the
ConfiguratorI methods.
=head1 FEEDBACK
=head2 Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
=head2 Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
=head1 AUTHOR - Robert Hubley
Email rhubley@systemsbiology.org
=head1 CONTRIBUTORS
Paul Edlefsen, pedlefsen@systemsbiology.org
Lincoln Stein, lstein@cshl.org
Heikki Lehvaslaiho, heikki-at-bioperl-dot-org
=head1 APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
=cut
# Let the code begin...
package Bio::Graphics::ConfiguratorI;
use strict;
use Carp;
use base qw(Bio::Root::RootI);
=head2 get_sections
Title : get_sections
Usage : my @values = $configurator->get_sections();
Function: Returns a list of the valid sections except
the default or undef.
Returns : A list of the sections which can be queried.
Args : (optional section as string, tag as string)
=cut
sub get_sections {
my ($self) = @_;
$self->throw_not_implemented();
}
=head2 get_tags
Title : get_tags
Usage : my @values = $configurator->get_tags();
or
my @values = $configurator->get_tags('dna');
Function: Returns a list of tags for a given section
or only the default tags section if no section
is given.
Returns : A scalar list of tags
Args :
=cut
sub get_tags {
my ($self) = @_;
$self->throw_not_implemented();
}
=head2 get
Title : get
Usage : my $value = $configurator->get('height');
or
my $value = $configurator->get('dna','height');
Function: Returns a tag value from a configurator from the
either the default "_general" section or from
a specified section or undef.
Returns : A scalar value for the tag
Args : (optional section as string, tag as string)
=cut
sub get {
my ($self) = @_;
$self->throw_not_implemented();
}
=head2 set
Title : set
Usage : $configurator->set('fgcolor','chartreuse');
or
$configurator->set('EST','fgcolor','chartreuse');
Function: Set a value for a tag
Returns : The old value of the tag
Args : (optional section as string, tag as string, value as scalar)
=cut
sub set {
my ($self) = @_;
$self->throw_not_implemented();
}
=head2 get_and_eval
Title : get_and_eval
Usage : my $value = $configurator->get_and_eval('height');
or
my $value = $configurator->get_and_eval('dna','height');
Function: This works like get() except that it is
also able to evaluate code references. These are
options whose values begin with the characters
"sub {". In this case the value will be passed to
an eval() and the resulting codereference returned.
Returns : A value of the tag or undef.
Args : (optional section as string, tag as string)
=cut
sub get_and_eval {
my ($self) = @_;
$self->throw_not_implemented();
}
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