Bio-FastParsers
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lib/Bio/FastParsers/Blast/Table/Hsp.pm view on Meta::CPAN
package Bio::FastParsers::Blast::Table::Hsp;
# ABSTRACT: Internal class for tabular BLAST parser
$Bio::FastParsers::Blast::Table::Hsp::VERSION = '0.221230';
use Moose;
use namespace::autoclean;
# public attributes
has $_ => (
is => 'ro',
isa => 'Str',
required => 1,
) for qw(query_id hit_id);
has $_ => (
is => 'ro',
isa => 'Num',
required => 1,
) for qw(
percent_identity hsp_length mismatches gaps
query_from query_to
hit_from hit_to
query_strand
hit_strand
query_start query_end
hit_start hit_end
);
has $_ => (
is => 'ro',
isa => 'Maybe[Num]',
required => 1,
) for qw(
evalue bit_score
);
sub expect {
return shift->evalue
}
__PACKAGE__->meta->make_immutable;
1;
__END__
=pod
=head1 NAME
Bio::FastParsers::Blast::Table::Hsp - Internal class for tabular BLAST parser
=head1 VERSION
version 0.221230
=head1 SYNOPSIS
# see Bio::FastParsers::Blast::Table
=head1 DESCRIPTION
( run in 1.143 second using v1.01-cache-2.11-cpan-5b529ec07f3 )