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</chain>
<connect atomSerial="26" type="bond">
  <atomID atomID="25" />
  <atomID atomID="242" />
</connect>

=head2 _gen_object_response

 Title    : _gen_object_response
 Function : Formats the supplied structure object data structure into dasstructure xml
 Args     : object data structure
 Returns  : Das Response string encapuslating 'object'
 Comment  : The object response allows the details of the coordinates to be descriped. For example
          : the fact that the coos are part of a pdb file.

=head2 _gen_chain_response

 Title    : _gen_chain_response
 Function : Formats the supplied chain object data structure into dasstructure xml
 Args     : chain data structure
 Returns  : Das Response string encapuslating 'chain'
 Comment  : Chain objects contain all of the atom positions (including hetatoms).
          : The groups are typically residues or ligands.

=head2 _gen_connect_response

 Title    : _gen_connect_response
 Function : Formats the supplied connect data structure into dasstructure xml
 Args     : connect data structure
 Returns  : Das Response string encapuslating "connect"
 Comment  : Such objects are specified to enable groups of atoms to be connected together.

=head2 cleanup : Post-request garbage collection

=head1 CONFIGURATION AND ENVIRONMENT

Used within Bio::Das::ProServer::Config, eg/proserver and of course all subclasses.

=head1 DIAGNOSTICS

set $self->{'debug'} = 1

=head1 DEPENDENCIES

=over

=item L<HTML::Entities|HTML::Entities>

=item L<HTTP::Date|HTTP::Date>

=item L<English|English>

=item L<Carp|Carp>

=back

=head1 INCOMPATIBILITIES

None reported

=head1 BUGS AND LIMITATIONS

None reported

=head1 LICENSE AND COPYRIGHT

Copyright (c) 2008 The Sanger Institute

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.

=cut