view release on metacpan or  search on metacpan

lib/Bio/Das/ProServer/SourceAdaptor/simple_volmap.pm  view on Meta::CPAN

=head1 NAME

  Bio::Das::ProServer::SourceAdaptor::simple_volmap

=head1 VERSION

$Revision: 688 $

=head1 AUTHOR

  Andy Jenkinson <andy.jenkinson@ebi.ac.uk>

=head1 SYNOPSIS

  Volume map for Vol01:
  <host>/das/<source>/volmap?query=volumeID


=head1 DESCRIPTION

  Serves up volume map DAS responses, using a file-based transport.

=head1 SUBROUTINES/METHODS

=head2 build_volmap

=head2 init

=head2 known_segments

=head2 length

=head1 CONFIGURATION AND ENVIRONMENT

  [simple_volmap]
  adaptor               = simple_volmap
  state                 = on
  transport             = file
  filename              = /data/volmap.txt
  coordinates           = MyCoordSys -> Vol01

  Tab-separated file formats:

  --volmap.txt--
  id	length	class	type	version	link	linktxt

=head1 DEPENDENCIES

=over

=item L<Bio::Das::ProServer::SourceAdaptor|Bio::Das::ProServer::SourceAdaptor>

=back

=head1 DIAGNOSTICS

=head1 INCOMPATIBILITIES

None reported

=head1 BUGS AND LIMITATIONS

None reported

=head1 LICENSE AND COPYRIGHT

Copyright (c) 2007 EMBL-EBI

=cut