view release on metacpan or  search on metacpan

lib/Bio/Das/Lite.pm  view on Meta::CPAN

  my $registry_arrayref = $biodaslite->registry();

=head2 registry_sources : Arrayref of dassource objects from the configured registry services

  my $sources_ref = $biodaslite->registry_sources();

  my $sources_ref = $biodaslite->registry_sources({
    'capability' => ['features','stylesheet'],
  });

  my $sources_ref = $biodaslite->registry_sources({
    'category' => ['Protein Sequence'],
  });

=head2 build_queries

Constructs an arrayref of DAS requests including parameters for each call

=head2 build_requests

Constructs the WWW::Curl callbacks

=head2 postprocess

Applies processing to the result set, e.g. removal of whitespace from sequence responses.

=head1 DESCRIPTION

This module is an implementation of a client for the DAS protocol (XML over HTTP primarily for biological-data).

=head1 DEPENDENCIES

=over

=item strict

=item warnings

=item WWW::Curl

=item HTTP::Response

=item Carp

=item English

=item Readonly

=back

=head1 DIAGNOSTICS

  Set $Bio::Das::Lite::DEBUG = 1;

=head1 CONFIGURATION AND ENVIRONMENT


=head1 INCOMPATIBILITIES

=head1 BUGS AND LIMITATIONS

  The max_req and max_hosts methods are now deprecated and have no effect.

=head1 SEE ALSO

DAS Specifications at: http://biodas.org/documents/spec.html

ProServer (A DAS Server implementation also by the author) at:
   http://www.sanger.ac.uk/proserver/

The venerable Bio::Das suite (CPAN and http://www.biodas.org/download/Bio::Das/).

The DAS Registry at:
   http://das.sanger.ac.uk/registry/

=head1 AUTHOR

Roger Pettett, E<lt>rpettett@cpan.orgE<gt>

=head1 LICENSE AND COPYRIGHT

Copyright (C) 2007 GRL, by Roger Pettett

This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself, either Perl version 5.8.4 or,
at your option, any later version of Perl 5 you may have available.

=cut